Wall clock time and date at job start Tue Mar 31 2020 05:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47009 * 2 1 4 4 C 1.52991 * 109.47495 * 239.99793 * 2 1 3 5 5 N 1.46500 * 109.47273 * 119.99606 * 2 1 3 6 6 N 1.40586 * 127.38190 * 113.98487 * 5 2 1 7 7 N 1.28911 * 106.81798 * 180.02562 * 6 5 2 8 8 N 1.28425 * 110.31413 * 0.02562 * 7 6 5 9 9 C 1.31472 * 110.51008 * 0.02562 * 8 7 6 10 10 N 1.38379 * 126.43809 * 179.97438 * 9 8 7 11 11 C 1.48529 * 111.00123 * 293.63036 * 10 9 8 12 12 C 1.54940 * 103.22606 * 159.72041 * 11 10 9 13 13 C 1.54593 * 102.92376 * 322.58892 * 12 11 10 14 14 O 1.42894 * 110.30922 * 263.03884 * 13 12 11 15 15 C 1.50700 * 110.39325 * 140.91234 * 13 12 11 16 16 H 1.08002 * 120.00406 * 244.23759 * 15 13 12 17 17 C 1.37878 * 119.99861 * 64.24043 * 15 13 12 18 18 N 1.31513 * 119.99938 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00077 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47374 * 59.99372 * 19 17 15 21 21 H 1.48503 * 109.47439 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47154 * 299.99753 * 19 17 15 23 23 C 1.47905 * 111.00134 * 51.03296 * 10 9 8 24 24 H 1.08996 * 109.47407 * 300.00367 * 1 2 3 25 25 H 1.08998 * 109.47243 * 60.00422 * 1 2 3 26 26 H 1.08998 * 109.46927 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47588 * 173.76856 * 3 2 1 28 28 H 1.09004 * 109.47156 * 293.76975 * 3 2 1 29 29 H 1.09005 * 109.47523 * 53.76701 * 3 2 1 30 30 H 1.08998 * 109.47096 * 299.99974 * 4 2 1 31 31 H 1.09008 * 109.47177 * 60.00191 * 4 2 1 32 32 H 1.09002 * 109.47765 * 179.97438 * 4 2 1 33 33 H 1.08999 * 110.66962 * 278.15647 * 11 10 9 34 34 H 1.09004 * 110.66552 * 41.29036 * 11 10 9 35 35 H 1.08996 * 110.72376 * 204.23132 * 12 11 10 36 36 H 1.09004 * 110.72135 * 80.94722 * 12 11 10 37 37 H 0.96696 * 114.00578 * 295.71191 * 14 13 12 38 38 H 0.97001 * 119.99832 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.91532 * 333.50823 * 23 10 9 40 40 H 1.09001 * 109.91726 * 94.80187 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 2.0183 -0.6905 1.1962 6 7 2.7310 -1.9011 1.2518 7 7 2.9593 -2.1427 2.4973 8 7 2.4645 -1.2113 3.2301 9 6 1.8784 -0.3008 2.4844 10 7 1.2392 0.8417 2.9327 11 6 0.0181 0.4999 3.7062 12 6 -0.2443 1.7801 4.5385 13 6 1.1812 2.2488 4.9106 14 8 1.5268 1.7939 6.2204 15 6 1.2758 3.7510 4.8377 16 1 1.9289 4.2166 4.1143 17 6 0.5286 4.5312 5.6944 18 7 -0.2670 3.9644 6.5749 19 14 0.6453 6.3933 5.6036 20 1 0.2338 6.8498 4.2517 21 1 -0.2509 6.9958 6.6230 22 1 2.0453 6.8148 5.8635 23 6 2.1038 1.6036 3.8599 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1242 1.4446 0.1115 28 1 1.7705 1.9231 -0.9405 29 1 1.5884 1.9876 0.8290 30 1 1.6767 -1.7489 -1.2491 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7209 -1.2494 33 1 -0.8178 0.2985 3.0363 34 1 0.2029 -0.3527 4.3597 35 1 -0.8196 1.5465 5.4343 36 1 -0.7534 2.5334 3.9373 37 1 0.9786 2.1674 6.9239 38 1 -0.7930 4.5133 7.1774 39 1 2.8087 0.9305 4.3479 40 1 2.6428 2.3776 3.3136 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119652048.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:09 Heat of formation + Delta-G solvation = 78.517901 kcal Electronic energy + Delta-G solvation = -23592.966771 eV Core-core repulsion = 20252.882672 eV Total energy + Delta-G solvation = -3340.084099 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.75810 -38.72206 -37.57746 -35.12406 -32.16408 -32.05517 -31.62693 -28.90031 -28.38353 -27.65242 -27.48843 -24.93570 -23.95050 -22.41780 -20.84179 -20.10414 -19.62087 -17.21500 -17.04357 -16.24944 -16.12167 -15.01104 -14.80092 -14.31854 -14.22670 -14.08099 -13.53733 -13.21062 -13.07440 -12.68482 -12.55415 -12.42972 -12.14102 -12.05554 -11.83446 -11.74345 -11.59349 -11.40090 -11.28054 -10.99818 -10.85393 -10.73362 -10.61488 -10.55108 -10.19084 -10.13710 -9.79456 -9.27601 -8.67976 -8.59616 -8.22153 -6.29669 -4.36992 1.22367 1.89905 2.54049 3.19713 3.25482 3.28002 3.86420 4.23432 4.24737 4.54956 4.67219 4.81404 4.98010 5.21506 5.30776 5.37535 5.45036 5.47743 5.52424 5.61513 5.66054 5.69314 5.71876 5.87457 5.90581 5.98375 6.02543 6.14536 6.24342 6.30508 6.47567 6.61293 6.76872 6.91887 7.26551 7.35432 7.39784 7.71988 8.00897 8.64002 8.77777 9.31028 9.45579 10.78037 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.024147 B = 0.005450 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.266139 B = 5136.229872 C = 5690.251074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.181 3.819 3 C -0.164 4.164 4 C -0.147 4.147 5 N -0.360 5.360 6 N -0.097 5.097 7 N -0.045 5.045 8 N -0.352 5.352 9 C 0.423 3.577 10 N -0.448 5.448 11 C 0.041 3.959 12 C -0.117 4.117 13 C 0.251 3.749 14 O -0.589 6.589 15 C -0.533 4.533 16 H 0.063 0.937 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.902 3.098 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.061 3.939 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.386 0.614 38 H 0.269 0.731 39 H 0.064 0.936 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.203 -4.205 -12.822 13.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.098 3.902 3 C -0.222 4.222 4 C -0.205 4.205 5 N -0.159 5.159 6 N -0.083 5.083 7 N -0.041 5.041 8 N -0.209 5.209 9 C 0.056 3.944 10 N -0.177 5.177 11 C -0.086 4.086 12 C -0.156 4.156 13 C 0.210 3.790 14 O -0.399 6.399 15 C -0.571 4.571 16 H 0.081 0.919 17 C -0.131 4.131 18 N -0.537 5.537 19 Si 0.729 3.271 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.066 4.066 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.237 0.763 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.287 -5.395 -13.296 14.352 hybrid contribution -0.715 1.642 0.508 1.861 sum -1.002 -3.753 -12.788 13.365 Atomic orbital electron populations 1.22289 0.91960 1.03053 1.04657 1.20990 0.95199 0.92633 0.81411 1.22311 1.02027 0.93051 1.04860 1.22010 1.02442 1.01090 0.94966 1.51960 1.39186 1.17545 1.07196 1.82431 1.13601 0.97366 1.14919 1.77898 1.13106 1.17211 0.95920 1.74975 1.16981 1.01887 1.27008 1.23599 0.94574 0.93373 0.82817 1.62181 1.06502 1.10205 1.38785 1.23523 0.89051 1.00707 0.95274 1.23075 1.00843 0.93077 0.98592 1.19224 0.87516 0.91817 0.80438 1.86130 1.63531 1.72534 1.17673 1.21593 1.25785 0.90585 1.19127 0.91873 1.24993 0.94099 0.99356 0.94661 1.69596 1.27009 1.36172 1.20933 0.86498 0.78185 0.84526 0.77885 1.20097 1.21152 1.20077 1.23071 0.95178 0.96169 0.92134 0.90026 0.89833 0.92134 0.92132 0.90133 0.88682 0.91235 0.90301 0.91374 0.90904 0.92451 0.90563 0.90745 0.76250 0.92073 0.91795 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 8.62 37.16 0.32 -1.36 16 2 C 0.18 2.13 1.20 -131.83 -0.16 1.97 16 3 C -0.16 -1.86 8.35 37.16 0.31 -1.55 16 4 C -0.15 -1.40 8.08 37.15 0.30 -1.10 16 5 N -0.36 -5.66 3.50 -49.14 -0.17 -5.83 16 6 N -0.10 -1.68 13.09 60.35 0.79 -0.89 16 7 N -0.05 -0.88 13.38 60.35 0.81 -0.07 16 8 N -0.35 -7.14 11.37 30.10 0.34 -6.80 16 9 C 0.42 7.67 5.99 -320.41 -1.92 5.75 16 10 N -0.45 -8.11 3.39 -170.89 -0.58 -8.69 16 11 C 0.04 0.74 6.37 -1.90 -0.01 0.73 16 12 C -0.12 -2.46 5.50 -24.87 -0.14 -2.59 16 13 C 0.25 5.83 0.99 -90.42 -0.09 5.74 16 14 O -0.59 -14.88 12.93 -35.23 -0.46 -15.34 16 15 C -0.53 -13.31 8.10 -34.44 -0.28 -13.59 16 16 H 0.06 1.56 7.34 -52.49 -0.39 1.18 16 17 C 0.07 1.77 5.26 -17.82 -0.09 1.68 16 18 N -0.90 -22.63 10.88 55.43 0.60 -22.02 16 19 Si 0.90 19.65 29.54 -169.99 -5.02 14.63 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 21 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 C 0.06 1.27 6.11 -2.75 -0.02 1.25 16 24 H 0.08 0.98 6.69 -51.93 -0.35 0.64 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 1.27 6.86 -51.93 -0.36 0.92 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.14 7.44 -51.93 -0.39 0.75 16 34 H 0.06 1.12 7.90 -51.93 -0.41 0.71 16 35 H 0.08 1.68 8.05 -51.93 -0.42 1.26 16 36 H 0.07 1.60 7.86 -51.93 -0.41 1.19 16 37 H 0.39 9.83 7.05 45.56 0.32 10.15 16 38 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 39 H 0.06 1.44 7.05 -51.93 -0.37 1.08 16 40 H 0.09 1.79 7.39 -51.93 -0.38 1.40 16 LS Contribution 322.93 15.07 4.87 4.87 Total: -1.00 -27.27 322.93 -5.83 -33.10 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -5.23 Total: 10.12 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -1.78 Total: -3.06 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 1.79 Total: -44.30 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.46 Total: -15.34 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.27 -5.83 -33.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119652048.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.613 kcal (2) G-P(sol) polarization free energy of solvation -27.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds