Wall clock time and date at job start Tue Mar 31 2020 05:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47030 * 2 1 4 4 C 1.53005 * 109.47038 * 119.99380 * 2 1 3 5 5 N 1.46497 * 109.47369 * 239.99619 * 2 1 3 6 6 N 1.40585 * 127.38115 * 359.05081 * 5 2 1 7 7 N 1.28909 * 106.81474 * 179.97438 * 6 5 2 8 8 N 1.28423 * 110.31867 * 0.02562 * 7 6 5 9 9 C 1.31473 * 110.50917 * 359.74733 * 8 7 6 10 10 N 1.38376 * 126.44401 * 180.26377 * 9 8 7 11 11 C 1.47842 * 111.00122 * 59.71513 * 10 9 8 12 12 C 1.54903 * 104.79880 * 213.63735 * 11 10 9 13 13 C 1.55137 * 101.65080 * 37.07104 * 12 11 10 14 14 O 1.42906 * 110.70648 * 82.72829 * 13 12 11 15 15 C 1.50699 * 110.85618 * 205.89151 * 13 12 11 16 16 H 1.07999 * 119.99929 * 113.69098 * 15 13 12 17 17 C 1.37879 * 119.99990 * 293.68488 * 15 13 12 18 18 N 1.31513 * 119.99946 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 119.99727 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46782 * 90.00725 * 19 17 15 21 21 H 1.48500 * 109.46784 * 210.00285 * 19 17 15 22 22 H 1.48490 * 109.47200 * 330.00241 * 19 17 15 23 23 C 1.47440 * 110.99625 * 298.87647 * 10 9 8 24 24 H 1.09002 * 109.46923 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46605 * 60.00640 * 1 2 3 26 26 H 1.08998 * 109.47197 * 300.00359 * 1 2 3 27 27 H 1.08999 * 109.47344 * 54.47499 * 3 2 1 28 28 H 1.09010 * 109.47435 * 174.47242 * 3 2 1 29 29 H 1.09000 * 109.47485 * 294.47357 * 3 2 1 30 30 H 1.09002 * 109.46716 * 60.00544 * 4 2 1 31 31 H 1.09001 * 109.47470 * 180.02562 * 4 2 1 32 32 H 1.09002 * 109.47323 * 300.00695 * 4 2 1 33 33 H 1.09000 * 110.37397 * 332.47439 * 11 10 9 34 34 H 1.09003 * 110.37122 * 94.80714 * 11 10 9 35 35 H 1.08996 * 110.99284 * 278.98405 * 12 11 10 36 36 H 1.08999 * 111.02299 * 155.17359 * 12 11 10 37 37 H 0.96705 * 113.99897 * 66.39955 * 14 13 12 38 38 H 0.97001 * 119.99545 * 179.97438 * 18 17 15 39 39 H 1.09005 * 109.88849 * 242.65996 * 23 10 9 40 40 H 1.08999 * 109.89282 * 3.68483 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 2.0184 -0.6907 -1.1961 6 7 1.2499 -1.2953 -2.2061 7 7 2.0791 -1.7818 -3.0649 8 7 3.2879 -1.5469 -2.7002 9 6 3.3058 -0.8789 -1.5679 10 7 4.4299 -0.4510 -0.8837 11 6 5.2436 0.4587 -1.7180 12 6 6.7083 0.1714 -1.3036 13 6 6.6740 -1.3625 -1.0744 14 8 6.8197 -2.0618 -2.3122 15 6 7.7422 -1.7832 -0.0982 16 1 7.4652 -2.1825 0.8663 17 6 9.0730 -1.6584 -0.4363 18 7 9.4102 -1.1718 -1.6107 19 14 10.3971 -2.1792 0.7742 20 1 10.7322 -3.6093 0.5560 21 1 11.6109 -1.3492 0.5673 22 1 9.9006 -1.9931 2.1612 23 6 5.2691 -1.5938 -0.4793 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3633 0.5139 0.8899 27 1 1.5981 1.9841 0.8364 28 1 3.1256 1.4441 0.0990 29 1 1.7597 1.9270 -0.9353 30 1 1.6767 -1.7488 1.2494 31 1 3.1300 -0.7208 1.2497 32 1 1.6766 -0.2073 2.1393 33 1 5.0977 0.2365 -2.7750 34 1 4.9867 1.4971 -1.5086 35 1 6.9645 0.6979 -0.3842 36 1 7.3996 0.4310 -2.1054 37 1 7.6856 -1.9493 -2.7279 38 1 10.3465 -1.0837 -1.8484 39 1 5.3305 -1.6425 0.6079 40 1 4.8467 -2.5202 -0.8685 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119652050.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:11 Heat of formation + Delta-G solvation = 78.749182 kcal Electronic energy + Delta-G solvation = -23625.407841 eV Core-core repulsion = 20285.333771 eV Total energy + Delta-G solvation = -3340.074070 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.68913 -38.70742 -37.55938 -34.97552 -32.13202 -31.99867 -31.53128 -28.88963 -28.44724 -27.65487 -27.50673 -24.94621 -23.88942 -22.34967 -20.70875 -20.13497 -19.60926 -17.21791 -16.99607 -16.24472 -16.06425 -14.97694 -14.72915 -14.39710 -14.19395 -14.10137 -13.51877 -13.13469 -13.05878 -12.64128 -12.56564 -12.31178 -12.21385 -11.99690 -11.85124 -11.79075 -11.59815 -11.34269 -11.23186 -10.98760 -10.85468 -10.63518 -10.52589 -10.50337 -10.14941 -10.07769 -9.78906 -9.34396 -8.73409 -8.44524 -8.16850 -6.29362 -4.37512 1.29100 1.95097 2.64606 3.18883 3.26675 3.28657 3.90878 4.24783 4.25706 4.55053 4.66657 4.87518 4.98532 5.23035 5.33280 5.36754 5.44919 5.50908 5.52425 5.64581 5.65235 5.70591 5.79231 5.88682 5.91797 6.05432 6.06521 6.15500 6.19532 6.25789 6.49497 6.61738 6.83974 6.98718 7.30619 7.34122 7.41509 7.73153 7.99565 8.63313 8.87202 9.31580 9.50891 10.78055 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.027536 B = 0.005184 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.608247 B = 5399.624793 C = 5799.019636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.181 3.819 3 C -0.161 4.161 4 C -0.163 4.163 5 N -0.363 5.363 6 N -0.100 5.100 7 N -0.047 5.047 8 N -0.338 5.338 9 C 0.425 3.575 10 N -0.463 5.463 11 C 0.048 3.952 12 C -0.129 4.129 13 C 0.245 3.755 14 O -0.581 6.581 15 C -0.535 4.535 16 H 0.063 0.937 17 C 0.073 3.927 18 N -0.896 5.896 19 Si 0.902 3.098 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.068 3.932 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.384 0.616 38 H 0.269 0.731 39 H 0.092 0.908 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.036 6.168 5.692 14.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.098 3.902 3 C -0.220 4.220 4 C -0.221 4.221 5 N -0.163 5.163 6 N -0.086 5.086 7 N -0.043 5.043 8 N -0.194 5.194 9 C 0.059 3.941 10 N -0.191 5.191 11 C -0.078 4.078 12 C -0.168 4.168 13 C 0.204 3.796 14 O -0.391 6.391 15 C -0.574 4.574 16 H 0.082 0.918 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.729 3.271 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.058 4.058 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.236 0.764 38 H 0.079 0.921 39 H 0.110 0.890 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.341 5.655 5.089 15.358 hybrid contribution 1.790 0.039 0.659 1.908 sum -11.550 5.695 5.749 14.103 Atomic orbital electron populations 1.22005 0.91583 1.03711 1.03192 1.20947 0.95751 0.92485 0.81027 1.22281 1.04193 0.92631 1.02864 1.22293 1.04142 1.00466 0.95190 1.51995 1.04784 1.40142 1.19336 1.82425 1.16400 1.13973 0.95778 1.77931 0.95357 1.12932 1.18103 1.75125 1.13468 1.18689 1.12099 1.23515 0.87354 0.93154 0.90094 1.61024 1.04540 1.17539 1.35961 1.23260 0.94668 0.94234 0.95632 1.23238 0.91370 1.00466 1.01735 1.19560 0.89441 0.87058 0.83572 1.86181 1.40561 1.74320 1.37989 1.21525 0.90776 1.43330 1.01726 0.91835 1.24986 0.98742 0.93720 0.95537 1.69585 1.18379 1.45068 1.20544 0.86433 0.80742 0.78691 0.81196 1.20449 1.21062 1.19753 1.23024 0.92993 0.89423 1.00397 0.91260 0.91343 0.90375 0.90101 0.89474 0.92198 0.92070 0.89575 0.90007 0.92151 0.91071 0.91202 0.89846 0.76409 0.92091 0.89000 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.08 37.16 0.30 -1.10 16 2 C 0.18 2.12 1.19 -131.82 -0.16 1.96 16 3 C -0.16 -1.66 8.45 37.16 0.31 -1.35 16 4 C -0.16 -1.75 8.55 37.16 0.32 -1.43 16 5 N -0.36 -5.80 3.50 -49.13 -0.17 -5.97 16 6 N -0.10 -1.78 13.08 60.35 0.79 -0.99 16 7 N -0.05 -0.95 13.38 60.35 0.81 -0.15 16 8 N -0.34 -7.18 11.63 30.10 0.35 -6.83 16 9 C 0.43 7.90 5.62 -320.41 -1.80 6.10 16 10 N -0.46 -8.33 3.19 -171.65 -0.55 -8.88 16 11 C 0.05 0.89 6.66 -2.30 -0.02 0.87 16 12 C -0.13 -2.73 5.67 -24.60 -0.14 -2.87 16 13 C 0.24 5.73 0.85 -89.95 -0.08 5.65 16 14 O -0.58 -14.99 13.08 -35.23 -0.46 -15.45 16 15 C -0.54 -13.48 8.22 -34.44 -0.28 -13.76 16 16 H 0.06 1.58 7.53 -52.49 -0.40 1.18 16 17 C 0.07 1.83 5.28 -17.82 -0.09 1.73 16 18 N -0.90 -22.89 10.69 55.43 0.59 -22.30 16 19 Si 0.90 19.79 29.54 -169.99 -5.02 14.76 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 23 C 0.07 1.39 6.12 -2.84 -0.02 1.38 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 1.02 7.13 -51.92 -0.37 0.65 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.08 7.06 -51.93 -0.37 0.72 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.22 7.50 -51.93 -0.39 0.83 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 36 H 0.08 1.89 7.76 -51.93 -0.40 1.49 16 37 H 0.38 10.09 6.98 45.56 0.32 10.40 16 38 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 39 H 0.09 1.77 7.63 -51.93 -0.40 1.38 16 40 H 0.06 1.35 7.38 -51.93 -0.38 0.97 16 LS Contribution 324.58 15.07 4.89 4.89 Total: -1.00 -27.94 324.58 -5.74 -33.68 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -5.32 Total: 10.03 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -1.65 Total: -2.81 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 1.82 Total: -45.11 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.46 Total: -15.45 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.94 -5.74 -33.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119652050.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.430 kcal (2) G-P(sol) polarization free energy of solvation -27.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds