Wall clock time and date at job start Tue Mar 31 2020 05:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47445 * 2 1 4 4 H 1.09000 * 109.46893 * 54.99632 * 3 2 1 5 5 C 1.53000 * 109.47064 * 294.99625 * 3 2 1 6 6 N 1.46506 * 109.47059 * 174.99729 * 3 2 1 7 7 N 1.40585 * 127.38101 * 60.02463 * 6 3 2 8 8 N 1.28907 * 106.81282 * 179.97438 * 7 6 3 9 9 N 1.28425 * 110.31753 * 359.72518 * 8 7 6 10 10 C 1.31472 * 110.50754 * 0.45877 * 9 8 7 11 11 N 1.38382 * 126.43789 * 179.81833 * 10 9 8 12 12 C 1.47439 * 111.00021 * 119.81790 * 11 10 9 13 13 C 1.54322 * 107.36952 * 236.65740 * 12 11 10 14 14 C 1.55398 * 102.90031 * 337.89642 * 13 12 11 15 15 O 1.42895 * 110.87186 * 277.39444 * 14 13 12 16 16 C 1.50700 * 111.05809 * 153.64741 * 14 13 12 17 17 H 1.08005 * 119.99878 * 247.58223 * 16 14 13 18 18 C 1.37869 * 119.99802 * 67.58770 * 16 14 13 19 19 N 1.31518 * 120.00171 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99890 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47088 * 90.00051 * 20 18 16 22 22 H 1.48497 * 109.47158 * 209.99856 * 20 18 16 23 23 H 1.48499 * 109.47268 * 330.00234 * 20 18 16 24 24 C 1.47843 * 110.99834 * 358.96967 * 11 10 9 25 25 H 1.09006 * 109.46594 * 60.00309 * 1 2 3 26 26 H 1.08996 * 109.47648 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47333 * 300.00804 * 1 2 3 28 28 H 1.08999 * 109.47333 * 239.99196 * 2 1 3 29 29 H 1.09006 * 109.46594 * 119.99691 * 2 1 3 30 30 H 1.08997 * 109.47109 * 59.99821 * 5 3 2 31 31 H 1.08996 * 109.47047 * 180.02562 * 5 3 2 32 32 H 1.09006 * 109.46949 * 300.00071 * 5 3 2 33 33 H 1.09002 * 109.88998 * 356.14661 * 12 11 10 34 34 H 1.09003 * 109.88733 * 117.17321 * 12 11 10 35 35 H 1.09005 * 110.70342 * 96.18020 * 13 12 11 36 36 H 1.08997 * 110.70605 * 219.41644 * 13 12 11 37 37 H 0.96706 * 113.99681 * 292.30288 * 15 14 13 38 38 H 0.97004 * 119.99744 * 179.97438 * 19 18 16 39 39 H 1.08996 * 110.37823 * 265.19492 * 24 11 10 40 40 H 1.09002 * 110.37399 * 27.54007 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6354 2.1265 -1.3074 6 7 3.5001 1.4441 0.1205 7 7 4.4296 0.8591 -0.7572 8 7 5.6004 1.0985 -0.2740 9 7 5.5045 1.7774 0.8119 10 6 4.2429 2.0097 1.0999 11 7 3.7648 2.7067 2.1956 12 6 2.9843 3.8841 1.7734 13 6 3.6288 5.1234 2.4293 14 6 4.3955 4.5173 3.6375 15 8 3.5191 4.3181 4.7484 16 6 5.5662 5.3832 4.0255 17 1 6.5746 5.0235 3.8830 18 6 5.3500 6.6345 4.5626 19 7 4.1221 7.0726 4.7358 20 14 6.8012 7.7076 5.0442 21 1 7.2023 8.5465 3.8864 22 1 6.4141 8.5832 6.1794 23 1 7.9409 6.8462 5.4497 24 6 4.8749 3.1625 3.0591 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 0.5491 2.1252 -1.3970 31 1 1.9991 3.1540 -1.3076 32 1 2.0700 1.5874 -2.1492 33 1 3.0160 3.9803 0.6881 34 1 1.9514 3.7832 2.1066 35 1 4.3194 5.6091 1.7397 36 1 2.8638 5.8227 2.7666 37 1 3.1929 5.1380 5.1440 38 1 3.9701 7.9528 5.1140 39 1 5.0490 2.4471 3.8628 40 1 5.7816 3.3009 2.4701 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119652065.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:45 Heat of formation + Delta-G solvation = 71.857649 kcal Electronic energy + Delta-G solvation = -23197.335954 eV Core-core repulsion = 19856.963044 eV Total energy + Delta-G solvation = -3340.372909 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.68600 -38.84258 -37.22165 -35.14264 -32.78232 -32.19133 -31.60263 -29.66313 -28.85988 -28.52321 -25.47463 -25.05298 -23.37184 -22.28039 -20.73142 -20.55436 -19.57532 -17.69272 -16.98137 -16.50420 -16.00277 -15.37556 -15.02089 -14.94315 -14.22945 -14.05899 -13.72328 -13.36345 -13.09920 -12.78219 -12.55059 -12.41827 -12.30344 -12.09743 -11.91561 -11.72826 -11.55636 -11.38142 -11.30651 -10.99862 -10.90608 -10.83666 -10.59703 -10.51152 -10.26933 -10.12137 -9.92346 -9.47047 -8.73008 -8.34829 -8.25416 -6.35266 -4.42668 1.32607 1.95137 2.63686 3.17843 3.25567 3.30413 3.83564 4.15986 4.23572 4.50683 4.68430 4.79312 4.91937 4.96062 5.04893 5.12432 5.24700 5.37454 5.41163 5.54395 5.59307 5.66063 5.69233 5.72459 5.74369 5.84705 5.97143 6.00820 6.09090 6.28833 6.38015 6.60470 6.72989 6.88990 7.17382 7.23462 7.27576 7.69010 7.93415 8.60380 8.86539 9.26579 9.41468 10.72628 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.026477 B = 0.004830 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.260370 B = 5795.738082 C = 6329.222857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C 0.152 3.848 4 H 0.114 0.886 5 C -0.164 4.164 6 N -0.388 5.388 7 N -0.102 5.102 8 N -0.036 5.036 9 N -0.362 5.362 10 C 0.431 3.569 11 N -0.443 5.443 12 C 0.046 3.954 13 C -0.146 4.146 14 C 0.256 3.744 15 O -0.581 6.581 16 C -0.536 4.536 17 H 0.068 0.932 18 C 0.073 3.927 19 N -0.899 5.899 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.271 1.271 24 C 0.065 3.935 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.386 0.614 38 H 0.270 0.730 39 H 0.087 0.913 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.013 -7.225 -8.260 14.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C 0.050 3.950 4 H 0.132 0.868 5 C -0.222 4.222 6 N -0.189 5.189 7 N -0.089 5.089 8 N -0.032 5.032 9 N -0.221 5.221 10 C 0.066 3.934 11 N -0.167 5.167 12 C -0.080 4.080 13 C -0.185 4.185 14 C 0.215 3.785 15 O -0.391 6.391 16 C -0.574 4.574 17 H 0.086 0.914 18 C -0.129 4.129 19 N -0.539 5.539 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.195 1.195 24 C -0.060 4.060 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.238 0.762 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.323 -8.540 -8.811 14.827 hybrid contribution 0.087 1.906 0.403 1.950 sum -8.236 -6.634 -8.408 13.511 Atomic orbital electron populations 1.21791 0.93970 1.02561 1.02474 1.21844 0.96889 0.94323 1.03762 1.21687 0.73018 0.99082 1.01224 0.86822 1.22223 1.02683 1.01057 0.96207 1.51538 1.08865 1.40336 1.18134 1.82353 0.92836 1.20076 1.13638 1.77831 1.15043 1.07473 1.02867 1.74888 1.14459 1.20906 1.11863 1.23750 0.86728 0.95247 0.87708 1.60422 1.23818 1.23574 1.08862 1.23091 0.98091 0.88866 0.97953 1.23418 1.00609 0.94937 0.99553 1.19552 0.87770 0.87935 0.83251 1.86102 1.66849 1.37570 1.48587 1.21508 0.93067 1.00247 1.42571 0.91428 1.24985 0.96370 0.97407 0.94172 1.69558 1.19518 1.19954 1.44842 0.86389 0.82278 0.79997 0.78220 1.20453 1.20972 1.19512 1.23345 0.90176 0.98189 0.94306 0.91992 0.91878 0.92037 0.90448 0.91101 0.89794 0.91860 0.90920 0.93527 0.89698 0.91630 0.89492 0.76219 0.92037 0.89503 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.67 37.15 0.36 -0.73 16 2 C -0.13 -1.29 5.69 -26.73 -0.15 -1.44 16 3 C 0.15 1.77 2.69 -67.93 -0.18 1.59 16 4 H 0.11 1.31 6.46 -51.93 -0.34 0.97 16 5 C -0.16 -1.57 9.24 37.16 0.34 -1.23 16 6 N -0.39 -6.13 3.27 -55.35 -0.18 -6.31 16 7 N -0.10 -1.76 13.85 60.35 0.84 -0.93 16 8 N -0.04 -0.70 13.38 60.35 0.81 0.10 16 9 N -0.36 -7.34 10.67 30.10 0.32 -7.02 16 10 C 0.43 7.98 6.94 -320.42 -2.22 5.76 16 11 N -0.44 -8.32 5.12 -171.65 -0.88 -9.20 16 12 C 0.05 0.79 5.32 -2.84 -0.02 0.78 16 13 C -0.15 -3.05 5.65 -24.77 -0.14 -3.19 16 14 C 0.26 5.95 0.89 -89.49 -0.08 5.87 16 15 O -0.58 -14.15 13.18 -35.23 -0.46 -14.61 16 16 C -0.54 -13.67 8.25 -34.44 -0.28 -13.95 16 17 H 0.07 1.74 7.77 -52.48 -0.41 1.33 16 18 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 19 N -0.90 -22.56 10.78 55.43 0.60 -21.96 16 20 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 C 0.06 1.39 5.67 -2.29 -0.01 1.38 16 25 H 0.06 0.38 6.57 -51.93 -0.34 0.04 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.58 6.56 -51.93 -0.34 0.24 16 31 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.74 7.23 -51.93 -0.38 0.37 16 34 H 0.08 1.33 7.88 -51.93 -0.41 0.92 16 35 H 0.06 1.42 8.04 -51.93 -0.42 1.00 16 36 H 0.09 1.88 7.84 -51.93 -0.41 1.47 16 37 H 0.39 9.54 6.93 45.56 0.32 9.86 16 38 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 39 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 40 H 0.09 1.93 6.77 -51.93 -0.35 1.58 16 LS Contribution 323.71 15.07 4.88 4.88 Total: -1.00 -27.29 323.71 -6.75 -34.04 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -5.16 Total: 9.50 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -2.48 Total: -3.43 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 1.50 Total: -45.31 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.46 Total: -14.61 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.29 -6.75 -34.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119652065.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.896 kcal (2) G-P(sol) polarization free energy of solvation -27.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds