Wall clock time and date at job start Tue Mar 31 2020 05:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46616 * 2 1 4 4 H 1.08994 * 109.47247 * 304.99370 * 3 2 1 5 5 C 1.52993 * 109.47254 * 65.00257 * 3 2 1 6 6 N 1.46498 * 109.46762 * 184.99993 * 3 2 1 7 7 N 1.40589 * 127.38368 * 300.12005 * 6 3 2 8 8 N 1.28914 * 106.81830 * 180.26772 * 7 6 3 9 9 N 1.28420 * 110.31259 * 359.76921 * 8 7 6 10 10 C 1.31473 * 110.51181 * 359.97438 * 9 8 7 11 11 N 1.38373 * 126.43916 * 179.97438 * 10 9 8 12 12 C 1.47900 * 111.00272 * 120.14930 * 11 10 9 13 13 C 1.53989 * 107.06153 * 145.84199 * 12 11 10 14 14 C 1.54593 * 105.13799 * 358.77953 * 13 12 11 15 15 O 1.42907 * 110.72410 * 96.39797 * 14 13 12 16 16 C 1.50697 * 110.72544 * 219.68085 * 14 13 12 17 17 H 1.08002 * 119.99928 * 24.86552 * 16 14 13 18 18 C 1.37882 * 120.00623 * 204.86619 * 16 14 13 19 19 N 1.31511 * 120.00356 * 173.72229 * 18 16 14 20 20 Si 1.86804 * 119.99362 * 353.71962 * 18 16 14 21 21 H 1.48499 * 109.46906 * 87.22447 * 20 18 16 22 22 H 1.48498 * 109.46836 * 207.22495 * 20 18 16 23 23 H 1.48500 * 109.47213 * 327.22542 * 20 18 16 24 24 C 1.48537 * 111.00297 * 237.54932 * 11 10 9 25 25 H 1.08999 * 109.46760 * 60.00245 * 1 2 3 26 26 H 1.09004 * 109.46651 * 179.97438 * 1 2 3 27 27 H 1.08989 * 109.47276 * 300.00059 * 1 2 3 28 28 H 1.09002 * 109.47307 * 240.00126 * 2 1 3 29 29 H 1.08996 * 109.47256 * 119.99767 * 2 1 3 30 30 H 1.09004 * 109.46937 * 299.99495 * 5 3 2 31 31 H 1.08994 * 109.47718 * 59.99402 * 5 3 2 32 32 H 1.09004 * 109.47450 * 179.97438 * 5 3 2 33 33 H 1.09010 * 109.91308 * 26.49097 * 12 11 10 34 34 H 1.09001 * 109.92137 * 265.19931 * 12 11 10 35 35 H 1.09006 * 110.30946 * 117.69306 * 13 12 11 36 36 H 1.09000 * 110.31220 * 239.86503 * 13 12 11 37 37 H 0.96703 * 113.99930 * 56.21163 * 15 14 13 38 38 H 0.97004 * 120.00013 * 180.02562 * 19 18 16 39 39 H 1.08999 * 110.66174 * 318.71269 * 24 11 10 40 40 H 1.08992 * 110.66705 * 81.84089 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 7 3.4999 1.4444 -0.1204 7 7 4.4294 0.8570 0.7558 8 7 5.6006 1.1019 0.2760 9 7 5.5044 1.7773 -0.8120 10 6 4.2428 2.0093 -1.1001 11 7 3.7647 2.7064 -2.1957 12 6 2.8877 1.8525 -3.0258 13 6 1.7913 2.7629 -3.6090 14 6 2.0849 4.1676 -3.0340 15 8 2.8395 4.9472 -3.9641 16 6 0.8045 4.8701 -2.6624 17 1 -0.0782 4.2945 -2.4257 18 6 0.7597 6.2477 -2.6246 19 7 -0.3847 6.8631 -2.4221 20 14 2.3248 7.2397 -2.8611 21 1 2.5471 7.4756 -4.3102 22 1 2.1949 8.5432 -2.1615 23 1 3.4763 6.4890 -2.2993 24 6 2.9258 3.8561 -1.7706 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.5488 2.1252 1.3969 31 1 2.0697 1.5876 2.1491 32 1 1.9988 3.1542 1.3075 33 1 2.4359 1.0747 -2.4099 34 1 3.4646 1.4019 -3.8335 35 1 1.8522 2.7793 -4.6972 36 1 0.8066 2.4217 -3.2895 37 1 2.4220 5.0370 -4.8317 38 1 -0.4163 7.8323 -2.3959 39 1 2.2803 3.5743 -0.9387 40 1 3.5493 4.7092 -1.5033 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119652066.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:47 Heat of formation + Delta-G solvation = 82.850315 kcal Electronic energy + Delta-G solvation = -23917.698065 eV Core-core repulsion = 20577.801833 eV Total energy + Delta-G solvation = -3339.896232 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.87015 -39.42008 -37.15900 -35.62874 -32.80931 -32.52538 -31.97536 -29.80059 -29.29690 -28.64874 -25.64573 -24.91185 -23.49096 -22.50210 -21.09736 -20.63303 -20.00345 -17.77231 -17.45092 -16.45036 -16.23951 -15.62291 -15.25951 -14.80562 -14.57608 -14.23475 -13.86879 -13.62159 -13.09542 -13.01498 -12.81025 -12.56086 -12.50028 -12.19042 -12.05108 -11.95657 -11.83867 -11.67343 -11.37446 -11.16409 -10.97961 -10.73966 -10.65406 -10.50642 -10.32164 -10.21408 -9.83240 -9.38206 -8.85215 -8.72949 -8.59044 -6.35903 -4.51346 1.12439 1.90531 2.47986 3.36884 3.41308 3.48554 3.63738 4.15063 4.37444 4.47965 4.70816 4.73164 4.86242 4.92968 4.95706 5.06351 5.08960 5.21300 5.31522 5.39353 5.40164 5.51688 5.54212 5.69096 5.71941 5.73956 5.79126 5.84503 6.00395 6.04401 6.11014 6.17186 6.27819 6.32873 6.59819 6.75579 7.14323 7.29190 7.96567 8.48499 8.64934 8.73265 9.25369 10.71810 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.018200 B = 0.007039 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.120103 B = 3977.014091 C = 4537.002221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C 0.133 3.867 4 H 0.122 0.878 5 C -0.163 4.163 6 N -0.393 5.393 7 N -0.090 5.090 8 N -0.048 5.048 9 N -0.314 5.314 10 C 0.416 3.584 11 N -0.432 5.432 12 C 0.037 3.963 13 C -0.148 4.148 14 C 0.235 3.765 15 O -0.552 6.552 16 C -0.561 4.561 17 H 0.082 0.918 18 C 0.078 3.922 19 N -0.881 5.881 20 Si 0.944 3.056 21 H -0.289 1.289 22 H -0.324 1.324 23 H -0.267 1.267 24 C 0.038 3.962 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.372 0.628 38 H 0.269 0.731 39 H 0.068 0.932 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.189 -11.079 2.004 11.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C 0.031 3.969 4 H 0.140 0.860 5 C -0.221 4.221 6 N -0.196 5.196 7 N -0.077 5.077 8 N -0.044 5.044 9 N -0.168 5.168 10 C 0.051 3.949 11 N -0.159 5.159 12 C -0.090 4.090 13 C -0.187 4.187 14 C 0.194 3.806 15 O -0.360 6.360 16 C -0.598 4.598 17 H 0.100 0.900 18 C -0.128 4.128 19 N -0.515 5.515 20 Si 0.779 3.221 21 H -0.216 1.216 22 H -0.256 1.256 23 H -0.193 1.193 24 C -0.087 4.087 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.220 0.780 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.604 -11.249 3.025 11.759 hybrid contribution -1.135 0.572 -0.512 1.370 sum 0.469 -10.677 2.513 10.979 Atomic orbital electron populations 1.21810 0.93496 1.02609 1.03092 1.21869 0.97399 0.93898 1.03566 1.22102 0.72829 0.99432 1.02524 0.86034 1.22192 1.03285 1.01281 0.95293 1.52850 1.09500 1.38814 1.18425 1.82340 0.93193 1.18225 1.13964 1.78046 1.14903 1.08362 1.03063 1.74740 1.14284 1.17399 1.10392 1.24293 0.88541 0.93107 0.88971 1.62259 1.37153 1.06509 1.09939 1.23132 0.94053 0.95001 0.96837 1.23195 0.97045 0.97140 1.01296 1.19843 0.88825 0.87007 0.84952 1.86174 1.51623 1.72504 1.25685 1.21193 0.95087 0.92276 1.51231 0.90006 1.25150 0.97186 0.98133 0.92379 1.69947 1.25626 1.09786 1.46160 0.85747 0.82399 0.76035 0.77910 1.21590 1.25574 1.19324 1.24256 0.94146 0.90712 0.99635 0.91741 0.91781 0.91650 0.91425 0.90261 0.89289 0.90978 0.91346 0.93640 0.89335 0.90462 0.90214 0.77983 0.92178 0.91360 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.67 37.16 0.36 -0.96 16 2 C -0.13 -1.36 5.57 -26.73 -0.15 -1.50 16 3 C 0.13 1.73 1.26 -67.93 -0.09 1.64 16 4 H 0.12 1.68 4.63 -51.93 -0.24 1.44 16 5 C -0.16 -1.95 9.10 37.15 0.34 -1.61 16 6 N -0.39 -6.25 3.23 -55.36 -0.18 -6.42 16 7 N -0.09 -1.55 13.85 60.35 0.84 -0.71 16 8 N -0.05 -0.90 13.38 60.35 0.81 -0.10 16 9 N -0.31 -6.19 12.19 30.09 0.37 -5.82 16 10 C 0.42 7.53 6.78 -320.42 -2.17 5.36 16 11 N -0.43 -7.80 5.35 -170.90 -0.91 -8.71 16 12 C 0.04 0.55 5.89 -2.76 -0.02 0.54 16 13 C -0.15 -2.35 6.21 -25.38 -0.16 -2.50 16 14 C 0.23 4.65 0.78 -89.92 -0.07 4.58 16 15 O -0.55 -11.20 8.50 -35.23 -0.30 -11.50 16 16 C -0.56 -13.29 8.82 -34.44 -0.30 -13.60 16 17 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 18 C 0.08 2.01 5.46 -17.82 -0.10 1.91 16 19 N -0.88 -24.35 13.96 55.43 0.77 -23.58 16 20 Si 0.94 22.34 24.88 -169.99 -4.23 18.11 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.32 -7.96 7.11 56.52 0.40 -7.56 16 23 H -0.27 -6.39 5.31 56.52 0.30 -6.09 16 24 C 0.04 0.74 4.97 -1.90 -0.01 0.73 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.53 6.56 -51.94 -0.34 0.19 16 28 H 0.07 0.73 7.71 -51.93 -0.40 0.33 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 0.89 6.57 -51.93 -0.34 0.55 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.92 7.87 -51.93 -0.41 0.51 16 33 H 0.05 0.62 5.40 -51.92 -0.28 0.34 16 34 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.10 8.00 -51.93 -0.42 0.69 16 36 H 0.08 1.22 7.70 -51.93 -0.40 0.82 16 37 H 0.37 6.41 8.92 45.56 0.41 6.82 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.07 1.26 4.75 -51.93 -0.25 1.02 16 40 H 0.10 2.10 6.46 -51.93 -0.34 1.76 16 LS Contribution 310.81 15.07 4.68 4.68 Total: -1.00 -29.43 310.81 -5.28 -34.71 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -4.76 Total: 4.76 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -2.37 Total: -5.42 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 1.69 Total: -45.35 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.30 Total: -11.50 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.23 Total: 18.11 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.43 -5.28 -34.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119652066.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.562 kcal (2) G-P(sol) polarization free energy of solvation -29.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds