Wall clock time and date at job start Tue Mar 31 2020 05:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28715 * 125.86989 * 2 1 4 4 N 1.28638 * 110.18380 * 180.23709 * 3 2 1 5 5 C 1.33769 * 108.88108 * 359.75722 * 4 3 2 6 6 C 1.35310 * 125.87373 * 179.81963 * 2 1 3 7 7 C 1.50703 * 126.90897 * 0.03954 * 6 2 1 8 8 N 1.46506 * 109.47289 * 274.70679 * 7 6 2 9 9 C 1.34774 * 120.00072 * 179.97438 * 8 7 6 10 10 O 1.21583 * 120.00212 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99868 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00109 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47345 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.46785 * 299.99793 * 13 12 11 15 15 C 1.52995 * 109.47144 * 59.99842 * 13 12 11 16 16 C 1.50702 * 109.47354 * 180.02562 * 13 12 11 17 17 H 1.08000 * 119.99623 * 359.97438 * 16 13 12 18 18 C 1.37875 * 119.99820 * 179.97438 * 16 13 12 19 19 N 1.31508 * 120.00208 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 119.99454 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.46945 * 60.00912 * 20 18 16 22 22 H 1.48506 * 109.46734 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47666 * 300.00030 * 20 18 16 24 24 H 1.09005 * 109.47223 * 270.17400 * 1 2 3 25 25 H 1.08991 * 109.47214 * 30.17931 * 1 2 3 26 26 H 1.09005 * 109.46787 * 150.18212 * 1 2 3 27 27 H 1.08002 * 126.74936 * 179.97438 * 5 4 3 28 28 H 1.09001 * 109.47438 * 154.70461 * 7 6 2 29 29 H 1.09004 * 109.47113 * 34.70716 * 7 6 2 30 30 H 0.97001 * 119.99251 * 0.02562 * 8 7 6 31 31 H 0.97006 * 119.99964 * 0.02562 * 11 9 8 32 32 H 1.09003 * 109.47061 * 299.99794 * 12 11 9 33 33 H 1.08995 * 109.47328 * 60.00131 * 12 11 9 34 34 H 1.08997 * 109.47050 * 60.00193 * 14 13 12 35 35 H 1.08998 * 109.46910 * 180.02562 * 14 13 12 36 36 H 1.08997 * 109.47451 * 300.00514 * 14 13 12 37 37 H 1.08994 * 109.47689 * 60.00245 * 15 13 12 38 38 H 1.09010 * 109.46990 * 180.02562 * 15 13 12 39 39 H 1.09005 * 109.47153 * 299.99813 * 15 13 12 40 40 H 0.97000 * 119.99960 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2192 1.0430 0.0000 4 7 3.4576 0.6953 -0.0050 5 6 3.5322 -0.6403 -0.0031 6 6 2.2579 -1.0964 0.0035 7 6 1.8118 -2.5359 0.0072 8 7 1.5582 -2.9651 1.3848 9 6 1.1461 -4.2240 1.6334 10 8 0.9843 -5.0034 0.7144 11 7 0.9133 -4.6189 2.9008 12 6 0.4658 -5.9874 3.1711 13 6 0.2761 -6.1738 4.6778 14 6 1.6042 -5.9206 5.3942 15 6 -0.7742 -5.1841 5.1859 16 6 -0.1836 -7.5818 4.9560 17 1 -0.3265 -8.2743 4.1397 18 6 -0.4216 -7.9857 6.2526 19 7 -0.2479 -7.1423 7.2465 20 14 -0.9921 -9.7308 6.5972 21 1 0.0272 -10.6913 6.1036 22 1 -1.1761 -9.9116 8.0596 23 1 -2.2813 -9.9765 5.9025 24 1 -0.3634 0.0031 1.0277 25 1 -0.3633 0.8883 -0.5166 26 1 -0.3633 -0.8917 -0.5110 27 1 4.4323 -1.2373 -0.0066 28 1 2.5920 -3.1592 -0.4298 29 1 0.8976 -2.6345 -0.5782 30 1 1.6863 -2.3429 2.1179 31 1 1.0420 -3.9969 3.6340 32 1 -0.4805 -6.1677 2.6611 33 1 1.2139 -6.6925 2.8088 34 1 1.9371 -4.9023 5.1931 35 1 1.4692 -6.0538 6.4675 36 1 2.3525 -6.6256 5.0322 37 1 -1.7203 -5.3644 4.6756 38 1 -0.9090 -5.3165 6.2595 39 1 -0.4412 -4.1658 4.9848 40 1 -0.4150 -7.4266 8.1587 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123654279.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:15 Heat of formation + Delta-G solvation = 66.398716 kcal Electronic energy + Delta-G solvation = -21894.321661 eV Core-core repulsion = 18553.712034 eV Total energy + Delta-G solvation = -3340.609627 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.60240 -39.70902 -36.66943 -35.36034 -34.63444 -33.35190 -31.69043 -30.65849 -28.35937 -26.83518 -25.76419 -25.48242 -24.47593 -22.89591 -21.22603 -20.78569 -18.84459 -18.46936 -17.47346 -17.00138 -15.94232 -15.84729 -15.55694 -14.88604 -14.73787 -14.42183 -13.89571 -13.67010 -13.56577 -13.48707 -13.20374 -12.89922 -12.61769 -12.22601 -11.91709 -11.42599 -11.22825 -11.19507 -10.87650 -10.75448 -10.44555 -10.42201 -10.25655 -10.04091 -9.67139 -9.55846 -9.34066 -9.21546 -8.83550 -8.45590 -8.29157 -6.04986 -4.15282 1.11800 1.99710 2.23108 3.05213 3.28205 3.32707 3.36534 3.48504 3.93031 4.15474 4.35833 4.50164 4.59397 4.61628 4.74588 4.91307 5.20908 5.21898 5.32860 5.53299 5.84626 6.13626 6.17761 6.31097 6.34599 6.46176 6.73524 6.78367 6.83860 6.98727 7.00938 7.17440 7.34203 7.52121 7.66687 7.97540 8.08545 8.17333 8.31179 8.37313 8.83394 8.90218 9.50753 10.96411 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.037774 B = 0.003075 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.068217 B = 9104.839865 C = 9216.455718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.281 5.281 3 N -0.081 5.081 4 N -0.272 5.272 5 C -0.027 4.027 6 C -0.038 4.038 7 C 0.218 3.782 8 N -0.754 5.754 9 C 0.700 3.300 10 O -0.597 6.597 11 N -0.730 5.730 12 C 0.150 3.850 13 C 0.057 3.943 14 C -0.130 4.130 15 C -0.130 4.130 16 C -0.507 4.507 17 H 0.058 0.942 18 C 0.067 3.933 19 N -0.886 5.886 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.095 0.905 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.193 0.807 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.395 0.605 31 H 0.394 0.606 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.005 0.995 35 H 0.085 0.915 36 H 0.027 0.973 37 H 0.026 0.974 38 H 0.085 0.915 39 H 0.005 0.995 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.884 12.577 -10.812 16.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.076 5.076 3 N -0.061 5.061 4 N -0.137 5.137 5 C -0.185 4.185 6 C -0.170 4.170 7 C 0.092 3.908 8 N -0.412 5.412 9 C 0.400 3.600 10 O -0.475 6.475 11 N -0.384 5.384 12 C 0.027 3.973 13 C 0.056 3.944 14 C -0.188 4.188 15 C -0.187 4.187 16 C -0.546 4.546 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.114 0.886 25 H 0.122 0.878 26 H 0.120 0.880 27 H 0.210 0.790 28 H 0.114 0.886 29 H 0.096 0.904 30 H 0.229 0.771 31 H 0.229 0.771 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.024 0.976 35 H 0.104 0.896 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.104 0.896 39 H 0.024 0.976 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.708 13.377 -11.454 17.693 hybrid contribution -0.368 -1.480 0.930 1.786 sum 1.339 11.897 -10.524 15.940 Atomic orbital electron populations 1.22362 0.72441 1.06125 1.05545 1.47295 1.09541 1.04486 1.46259 1.78344 0.96718 1.11694 1.19357 1.75147 1.09456 1.12450 1.16652 1.23516 0.97216 0.91897 1.05890 1.22247 0.91560 0.91618 1.11622 1.19328 1.02079 0.85291 0.84142 1.45161 1.75097 1.12957 1.08026 1.15999 0.78349 0.81386 0.84292 1.90904 1.59762 1.53002 1.43881 1.45529 1.71302 1.16300 1.05308 1.21619 0.98018 0.78525 0.99126 1.18358 0.93009 0.95769 0.87285 1.21824 0.96871 0.95452 1.04638 1.21821 0.97911 0.94438 1.04559 1.20947 1.45321 0.95733 0.92603 0.92422 1.24873 0.95102 0.97328 0.96156 1.69788 1.49012 1.34423 0.99250 0.86628 0.79330 0.84862 0.77008 1.20242 1.21339 1.20273 0.88642 0.87809 0.87981 0.78985 0.88568 0.90390 0.77135 0.77115 0.92868 0.92805 0.97590 0.89642 0.95401 0.95456 0.89640 0.97646 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.40 11.22 59.85 0.67 1.07 16 2 N -0.28 -2.58 3.74 -63.79 -0.24 -2.81 16 3 N -0.08 -0.97 13.16 60.35 0.79 -0.18 16 4 N -0.27 -3.44 12.41 30.23 0.38 -3.06 16 5 C -0.03 -0.26 11.99 -17.74 -0.21 -0.48 16 6 C -0.04 -0.35 6.36 -82.09 -0.52 -0.87 16 7 C 0.22 2.04 5.90 -5.19 -0.03 2.01 16 8 N -0.75 -8.42 5.55 -66.41 -0.37 -8.79 16 9 C 0.70 11.15 8.57 -86.92 -0.74 10.41 16 10 O -0.60 -11.78 16.34 5.29 0.09 -11.69 16 11 N -0.73 -12.16 4.96 -65.23 -0.32 -12.49 16 12 C 0.15 3.06 4.50 -4.04 -0.02 3.04 16 13 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 14 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 15 C -0.13 -2.82 8.08 37.16 0.30 -2.52 16 16 C -0.51 -13.00 8.01 -34.44 -0.28 -13.28 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 19 N -0.89 -23.21 9.35 55.43 0.52 -22.69 16 20 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 24 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.10 0.41 7.22 -51.93 -0.37 0.04 16 27 H 0.19 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.08 0.70 7.31 -51.93 -0.38 0.32 16 30 H 0.40 3.78 8.48 -40.82 -0.35 3.44 16 31 H 0.39 5.92 6.18 -40.82 -0.25 5.67 16 32 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 35 H 0.08 2.09 6.07 -51.93 -0.32 1.77 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 2.08 6.07 -51.92 -0.32 1.76 16 39 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 40 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 330.89 15.07 4.99 4.99 Total: -1.00 -31.08 330.89 -5.51 -36.59 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.62 Total: 5.12 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -0.70 Total: -0.34 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.76 Total: -50.03 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.08 -5.51 -36.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123654279.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.989 kcal (2) G-P(sol) polarization free energy of solvation -31.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds