Wall clock time and date at job start Tue Mar 31 2020 05:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47099 * 2 1 4 4 C 1.52999 * 109.46858 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47229 * 183.81542 * 4 3 2 6 6 C 1.46897 * 111.00190 * 199.55204 * 5 4 3 7 7 C 1.50701 * 109.47544 * 70.12872 * 6 5 4 8 8 H 1.08001 * 119.99181 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00185 * 180.02562 * 7 6 5 10 10 N 1.31521 * 120.00137 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99757 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47082 * 89.99896 * 11 9 7 13 13 H 1.48503 * 109.46768 * 209.99448 * 11 9 7 14 14 H 1.48494 * 109.47151 * 329.99700 * 11 9 7 15 15 C 1.46902 * 110.99898 * 75.59856 * 5 4 3 16 16 C 1.50695 * 109.47306 * 199.49345 * 15 5 4 17 17 C 1.38720 * 120.03811 * 262.47108 * 16 15 5 18 18 O 1.35897 * 120.04145 * 0.25707 * 17 16 15 19 19 C 1.38722 * 119.91482 * 180.27324 * 17 16 15 20 20 C 1.38177 * 119.99721 * 0.02562 * 19 17 16 21 21 C 1.38213 * 120.07873 * 359.97438 * 20 19 17 22 22 C 1.38338 * 120.04472 * 82.74502 * 16 15 5 23 23 F 1.35105 * 119.99444 * 359.75262 * 22 16 15 24 24 H 1.08995 * 109.47291 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47135 * 300.00077 * 1 2 3 26 26 H 1.09004 * 109.46907 * 59.99757 * 1 2 3 27 27 H 1.08997 * 109.46739 * 240.00138 * 2 1 3 28 28 H 1.09000 * 109.46504 * 120.00015 * 2 1 3 29 29 H 1.09002 * 109.47190 * 59.99957 * 3 2 1 30 30 H 1.08987 * 109.47286 * 299.99805 * 3 2 1 31 31 H 1.09008 * 109.46720 * 63.82340 * 4 3 2 32 32 H 1.08998 * 109.47952 * 303.82124 * 4 3 2 33 33 H 1.09000 * 109.47009 * 190.12958 * 6 5 4 34 34 H 1.09006 * 109.47088 * 310.12610 * 6 5 4 35 35 H 0.97002 * 119.99609 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.47449 * 79.48820 * 15 5 4 37 37 H 1.09005 * 109.46673 * 319.49069 * 15 5 4 38 38 H 0.96696 * 114.00645 * 95.58428 * 18 17 16 39 39 H 1.07996 * 120.00241 * 180.02562 * 19 17 16 40 40 H 1.07994 * 119.96335 * 179.97438 * 20 19 17 41 41 H 1.07997 * 119.95759 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0597 2.8243 0.0928 6 6 5.4538 2.9201 -0.3602 7 6 5.5130 2.7107 -1.8514 8 1 4.6058 2.5246 -2.4069 9 6 6.7255 2.7557 -2.5062 10 7 7.8304 2.9819 -1.8296 11 14 6.7987 2.4968 -4.3548 12 1 6.6595 3.8050 -5.0437 13 1 8.1013 1.8827 -4.7173 14 1 5.6938 1.5972 -4.7728 15 6 3.9130 3.3448 1.4587 16 6 3.9596 4.8507 1.4301 17 6 5.1444 5.5144 1.7130 18 8 6.2659 4.8071 2.0110 19 6 5.1830 6.9009 1.6915 20 6 4.0419 7.6191 1.3891 21 6 2.8614 6.9577 1.1073 22 6 2.8194 5.5733 1.1273 23 9 1.6644 4.9286 0.8521 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6768 1.9563 -0.8899 31 1 3.9336 0.9889 -0.9215 32 1 3.9331 0.8706 0.8546 33 1 5.8482 3.9065 -0.1159 34 1 6.0510 2.1564 0.1380 35 1 8.6833 3.0139 -2.2904 36 1 4.7252 2.9679 2.0803 37 1 2.9583 3.0185 1.8712 38 1 6.8487 4.6563 1.2543 39 1 6.1047 7.4190 1.9111 40 1 4.0724 8.6985 1.3730 41 1 1.9707 7.5210 0.8716 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137837709.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:44 Heat of formation + Delta-G solvation = -76.842420 kcal Electronic energy + Delta-G solvation = -22755.176032 eV Core-core repulsion = 19356.142291 eV Total energy + Delta-G solvation = -3399.033741 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.47782 -39.54333 -37.01863 -36.13453 -34.29423 -32.67507 -31.09536 -29.38360 -28.59626 -27.01538 -24.74107 -22.94020 -22.32638 -21.63654 -20.66030 -19.74618 -18.24621 -16.72444 -16.28103 -16.16559 -15.63179 -15.24230 -15.02679 -14.70214 -14.40102 -14.14766 -13.81586 -13.65287 -13.43984 -12.94854 -12.45673 -12.29730 -12.09093 -11.95152 -11.78826 -11.58653 -11.23191 -11.15710 -10.87917 -10.81053 -10.70397 -10.64391 -10.28620 -10.23282 -9.99237 -9.73064 -9.25803 -8.47331 -8.40121 -8.31848 -7.24852 -6.08294 -4.07796 1.39847 1.44650 3.29539 3.35817 3.39806 3.69753 4.39055 4.42752 4.76145 4.89312 5.06380 5.11098 5.22403 5.27083 5.28550 5.44213 5.47707 5.57686 5.75805 5.85860 5.94381 6.04755 6.09362 6.12590 6.16698 6.24443 6.29275 6.39541 6.43101 6.48999 6.50093 6.64813 6.78114 6.87313 7.05734 7.18399 7.31001 7.78742 7.99564 8.07779 8.19039 8.51022 9.00105 9.56589 11.02608 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.009590 B = 0.008021 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.117064 B = 3489.894308 C = 5504.732513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.112 4.112 4 C 0.063 3.937 5 N -0.531 5.531 6 C 0.196 3.804 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.056 3.944 10 N -0.901 5.901 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.092 3.908 16 C -0.119 4.119 17 C 0.152 3.848 18 O -0.499 6.499 19 C -0.165 4.165 20 C -0.083 4.083 21 C -0.174 4.174 22 C 0.133 3.867 23 F -0.133 7.133 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.019 0.981 33 H 0.025 0.975 34 H -0.007 1.007 35 H 0.261 0.739 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.406 0.594 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.948 3.741 6.991 11.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.150 4.150 4 C -0.065 4.065 5 N -0.255 5.255 6 C 0.071 3.929 7 C -0.542 4.542 8 H 0.081 0.919 9 C -0.145 4.145 10 N -0.541 5.541 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.036 4.036 16 C -0.121 4.121 17 C 0.106 3.894 18 O -0.314 6.314 19 C -0.183 4.183 20 C -0.101 4.101 21 C -0.193 4.193 22 C 0.113 3.887 23 F -0.111 7.111 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.037 0.963 33 H 0.043 0.957 34 H 0.010 0.990 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.267 0.733 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.288 3.989 7.192 12.406 hybrid contribution 0.780 -0.639 -1.078 1.476 sum -8.508 3.349 6.115 11.000 Atomic orbital electron populations 1.21752 0.96371 1.00854 1.01649 1.21505 0.95307 0.97718 1.01679 1.21606 0.96073 0.95249 1.02117 1.22007 0.93846 0.89526 1.01106 1.62106 1.25268 1.19594 1.18523 1.19756 0.81551 0.95946 0.95636 1.21184 0.93018 1.47721 0.92320 0.91877 1.24950 0.95594 0.95499 0.98458 1.69919 0.98098 1.50329 1.35743 0.86522 0.77273 0.78371 0.85421 1.20696 1.21329 1.19853 1.20825 1.01044 0.89177 0.92516 1.20151 0.92624 0.97379 1.01982 1.18004 0.86546 0.89226 0.95595 1.84663 1.32373 1.74891 1.39440 1.21435 0.99607 0.93392 1.03890 1.20715 0.91569 0.99727 0.98139 1.21040 0.99887 0.92372 1.05986 1.17257 0.81805 0.89803 0.99824 1.91479 1.46585 1.82053 1.91012 0.93333 0.93065 0.92825 0.92053 0.92588 0.92746 0.91543 0.89712 0.96323 0.95719 0.98950 0.92926 0.93418 0.91041 0.73341 0.85214 0.85181 0.85091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 37.16 0.37 -1.39 16 2 C -0.12 -1.70 5.93 -26.73 -0.16 -1.86 16 3 C -0.11 -1.84 5.36 -26.73 -0.14 -1.99 16 4 C 0.06 1.23 4.80 -3.83 -0.02 1.21 16 5 N -0.53 -11.40 4.32 -237.52 -1.03 -12.42 16 6 C 0.20 4.88 4.50 -4.98 -0.02 4.86 16 7 C -0.50 -13.79 8.30 -34.44 -0.29 -14.08 16 8 H 0.06 1.75 7.58 -52.49 -0.40 1.35 16 9 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -25.51 13.29 55.43 0.74 -24.77 16 11 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 15 C 0.09 1.76 4.54 -4.98 -0.02 1.74 16 16 C -0.12 -2.20 5.01 -104.41 -0.52 -2.72 16 17 C 0.15 2.67 5.89 -39.22 -0.23 2.44 16 18 O -0.50 -8.99 12.05 -19.42 -0.23 -9.22 16 19 C -0.16 -2.44 9.99 -39.42 -0.39 -2.84 16 20 C -0.08 -1.10 10.04 -39.61 -0.40 -1.49 16 21 C -0.17 -2.49 10.02 -39.49 -0.40 -2.89 16 22 C 0.13 2.28 7.24 -39.44 -0.29 2.00 16 23 F -0.13 -2.33 16.61 2.25 0.04 -2.30 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.88 6.67 -51.93 -0.35 0.53 16 30 H 0.07 1.17 8.14 -51.94 -0.42 0.74 16 31 H 0.08 1.81 6.90 -51.92 -0.36 1.45 16 32 H 0.02 0.35 8.00 -51.93 -0.42 -0.07 16 33 H 0.02 0.63 4.58 -51.93 -0.24 0.39 16 34 H -0.01 -0.20 8.08 -51.93 -0.42 -0.62 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.05 0.94 7.18 -51.93 -0.37 0.57 16 37 H 0.07 1.27 6.17 -51.93 -0.32 0.95 16 38 H 0.41 7.22 7.47 45.56 0.34 7.56 16 39 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 338.06 15.07 5.09 5.09 Total: -1.00 -29.08 338.06 -8.49 -37.57 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -5.47 Total: 5.24 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -2.61 Total: -15.56 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: -0.29 Total: -37.19 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.23 Total: -9.22 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.08 -8.49 -37.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137837709.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.275 kcal (2) G-P(sol) polarization free energy of solvation -29.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds