Wall clock time and date at job start Tue Mar 31 2020 05:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47099 * 2 1 4 4 C 1.52999 * 109.46858 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47229 * 183.81542 * 4 3 2 6 6 C 1.46897 * 111.00190 * 199.55204 * 5 4 3 7 7 C 1.50701 * 109.47544 * 70.12872 * 6 5 4 8 8 H 1.08001 * 119.99181 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00185 * 180.02562 * 7 6 5 10 10 N 1.31521 * 120.00137 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99757 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47082 * 89.99896 * 11 9 7 13 13 H 1.48503 * 109.46768 * 209.99448 * 11 9 7 14 14 H 1.48494 * 109.47151 * 329.99700 * 11 9 7 15 15 C 1.46902 * 110.99898 * 75.59856 * 5 4 3 16 16 C 1.50695 * 109.47306 * 199.49345 * 15 5 4 17 17 C 1.38720 * 120.03811 * 262.47108 * 16 15 5 18 18 O 1.35897 * 120.04145 * 0.25707 * 17 16 15 19 19 C 1.38722 * 119.91482 * 180.27324 * 17 16 15 20 20 C 1.38177 * 119.99721 * 0.02562 * 19 17 16 21 21 C 1.38213 * 120.07873 * 359.97438 * 20 19 17 22 22 C 1.38338 * 120.04472 * 82.74502 * 16 15 5 23 23 F 1.35105 * 119.99444 * 359.75262 * 22 16 15 24 24 H 1.08995 * 109.47291 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47135 * 300.00077 * 1 2 3 26 26 H 1.09004 * 109.46907 * 59.99757 * 1 2 3 27 27 H 1.08997 * 109.46739 * 240.00138 * 2 1 3 28 28 H 1.09000 * 109.46504 * 120.00015 * 2 1 3 29 29 H 1.09002 * 109.47190 * 59.99957 * 3 2 1 30 30 H 1.08987 * 109.47286 * 299.99805 * 3 2 1 31 31 H 1.09008 * 109.46720 * 63.82340 * 4 3 2 32 32 H 1.08998 * 109.47952 * 303.82124 * 4 3 2 33 33 H 1.09000 * 109.47009 * 190.12958 * 6 5 4 34 34 H 1.09006 * 109.47088 * 310.12610 * 6 5 4 35 35 H 0.97002 * 119.99609 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.47449 * 79.48820 * 15 5 4 37 37 H 1.09005 * 109.46673 * 319.49069 * 15 5 4 38 38 H 0.96696 * 114.00645 * 95.58428 * 18 17 16 39 39 H 1.07996 * 120.00241 * 180.02562 * 19 17 16 40 40 H 1.07994 * 119.96335 * 179.97438 * 20 19 17 41 41 H 1.07997 * 119.95759 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0597 2.8243 0.0928 6 6 5.4538 2.9201 -0.3602 7 6 5.5130 2.7107 -1.8514 8 1 4.6058 2.5246 -2.4069 9 6 6.7255 2.7557 -2.5062 10 7 7.8304 2.9819 -1.8296 11 14 6.7987 2.4968 -4.3548 12 1 6.6595 3.8050 -5.0437 13 1 8.1013 1.8827 -4.7173 14 1 5.6938 1.5972 -4.7728 15 6 3.9130 3.3448 1.4587 16 6 3.9596 4.8507 1.4301 17 6 5.1444 5.5144 1.7130 18 8 6.2659 4.8071 2.0110 19 6 5.1830 6.9009 1.6915 20 6 4.0419 7.6191 1.3891 21 6 2.8614 6.9577 1.1073 22 6 2.8194 5.5733 1.1273 23 9 1.6644 4.9286 0.8521 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6768 1.9563 -0.8899 31 1 3.9336 0.9889 -0.9215 32 1 3.9331 0.8706 0.8546 33 1 5.8482 3.9065 -0.1159 34 1 6.0510 2.1564 0.1380 35 1 8.6833 3.0139 -2.2904 36 1 4.7252 2.9679 2.0803 37 1 2.9583 3.0185 1.8712 38 1 6.8487 4.6563 1.2543 39 1 6.1047 7.4190 1.9111 40 1 4.0724 8.6985 1.3730 41 1 1.9707 7.5210 0.8716 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137837709.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:44 Heat of formation + Delta-G solvation = -94.442756 kcal Electronic energy + Delta-G solvation = -22755.939240 eV Core-core repulsion = 19356.142291 eV Total energy + Delta-G solvation = -3399.796949 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.79377 -40.86354 -38.59747 -37.43628 -35.65646 -34.65276 -32.48399 -30.60062 -30.16265 -28.67699 -26.30165 -24.61331 -23.58619 -23.01520 -21.95836 -21.35485 -19.58005 -18.56702 -17.81513 -17.48328 -17.04325 -16.63009 -16.55658 -16.23304 -15.87277 -15.62477 -15.28792 -15.10450 -14.69992 -14.31098 -14.02808 -13.75114 -13.61511 -13.32959 -13.22978 -12.91879 -12.81171 -12.60676 -12.57546 -12.39181 -12.12742 -12.06678 -11.89633 -11.59731 -11.46367 -11.33749 -11.22751 -10.58350 -9.70131 -9.54789 -9.01866 -8.19981 -6.27421 0.16537 0.21144 1.39951 1.40325 1.51208 2.39220 2.47736 3.09008 3.15299 3.33611 3.56261 3.78559 3.88146 4.04506 4.07519 4.21022 4.30687 4.40379 4.43942 4.47420 4.61077 4.74581 4.78151 4.81831 4.98426 4.99972 5.06669 5.13946 5.17067 5.22557 5.23736 5.33353 5.34100 5.40859 5.45795 5.52594 5.67363 5.85055 6.07438 6.36567 6.59959 6.64819 6.86507 7.40968 8.90101 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.009590 B = 0.008021 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.117064 B = 3489.894308 C = 5504.732513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C -0.099 4.099 4 C 0.063 3.937 5 N -0.536 5.536 6 C 0.213 3.787 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.010 3.990 10 N -0.926 5.926 11 Si 0.959 3.041 12 H -0.274 1.274 13 H -0.281 1.281 14 H -0.270 1.270 15 C 0.099 3.901 16 C -0.148 4.148 17 C 0.123 3.877 18 O -0.508 6.508 19 C -0.164 4.164 20 C -0.069 4.069 21 C -0.166 4.166 22 C 0.112 3.888 23 F -0.140 7.140 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.021 0.979 33 H 0.019 0.981 34 H -0.040 1.040 35 H 0.264 0.736 36 H 0.033 0.967 37 H 0.082 0.918 38 H 0.400 0.600 39 H 0.151 0.849 40 H 0.176 0.824 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.254 5.197 6.595 13.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.137 4.137 4 C -0.065 4.065 5 N -0.260 5.260 6 C 0.087 3.913 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.189 4.189 10 N -0.566 5.566 11 Si 0.784 3.216 12 H -0.200 1.200 13 H -0.206 1.206 14 H -0.194 1.194 15 C -0.028 4.028 16 C -0.150 4.150 17 C 0.078 3.922 18 O -0.322 6.322 19 C -0.182 4.182 20 C -0.087 4.087 21 C -0.184 4.184 22 C 0.092 3.908 23 F -0.119 7.119 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.037 0.963 34 H -0.022 1.022 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.101 0.899 38 H 0.260 0.740 39 H 0.169 0.831 40 H 0.193 0.807 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.616 5.443 6.811 13.737 hybrid contribution 1.182 -1.033 -0.898 1.808 sum -9.434 4.409 5.913 11.975 Atomic orbital electron populations 1.21715 0.94453 1.02157 1.01876 1.21484 0.96930 0.95544 1.01933 1.21486 0.93391 0.97264 1.01583 1.22039 0.96045 0.88522 0.99863 1.62105 1.22888 1.20733 1.20288 1.19420 0.83104 0.94377 0.94361 1.21411 0.92919 1.48138 0.93539 0.92812 1.25725 0.95201 0.95082 1.02854 1.70021 0.98531 1.50676 1.37406 0.85536 0.77446 0.78481 0.80098 1.20009 1.20648 1.19443 1.20753 1.00876 0.90404 0.90791 1.20201 0.93908 0.96748 1.04142 1.18352 0.86000 0.90573 0.97275 1.84655 1.32705 1.75497 1.39295 1.21764 1.01392 0.92194 1.02860 1.21245 0.90095 1.01823 0.95487 1.21463 1.01586 0.91135 1.04238 1.17551 0.81250 0.91101 1.00863 1.91452 1.46786 1.82444 1.91218 0.91513 0.92528 0.92933 0.92363 0.91836 0.92364 0.92810 0.92168 0.96096 0.96318 1.02218 0.92672 0.94896 0.89942 0.73975 0.83081 0.80659 0.81966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.91 71.98 0.71 -2.45 16 2 C -0.12 -3.22 5.93 30.59 0.18 -3.04 16 3 C -0.10 -3.28 5.36 30.59 0.16 -3.11 16 4 C 0.06 2.56 4.80 86.30 0.41 2.97 16 5 N -0.54 -23.97 4.32 -905.37 -3.91 -27.87 16 6 C 0.21 11.14 4.50 85.56 0.38 11.52 16 7 C -0.52 -29.42 8.30 25.60 0.21 -29.21 16 8 H 0.05 3.07 7.58 -2.91 -0.02 3.04 16 9 C 0.01 0.56 5.46 84.65 0.46 1.02 16 10 N -0.93 -53.41 13.29 21.45 0.28 -53.13 16 11 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 14 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 15 C 0.10 3.94 4.54 85.55 0.39 4.33 16 16 C -0.15 -5.52 5.01 -19.73 -0.10 -5.62 16 17 C 0.12 4.37 5.89 22.50 0.13 4.50 16 18 O -0.51 -19.11 12.05 -92.39 -1.11 -20.22 16 19 C -0.16 -4.55 9.99 22.37 0.22 -4.32 16 20 C -0.07 -1.56 10.04 22.25 0.22 -1.33 16 21 C -0.17 -4.26 10.02 22.33 0.22 -4.04 16 22 C 0.11 3.76 7.24 22.36 0.16 3.92 16 23 F -0.14 -4.85 16.61 44.97 0.75 -4.11 16 24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 26 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 28 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.06 1.87 6.67 -2.39 -0.02 1.85 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.06 2.70 6.90 -2.38 -0.02 2.69 16 32 H 0.02 0.82 8.00 -2.39 -0.02 0.80 16 33 H 0.02 1.00 4.58 -2.39 -0.01 0.99 16 34 H -0.04 -2.29 8.08 -2.38 -0.02 -2.31 16 35 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 36 H 0.03 1.38 7.18 -2.39 -0.02 1.36 16 37 H 0.08 3.00 6.17 -2.38 -0.01 2.99 16 38 H 0.40 15.27 7.47 -74.06 -0.55 14.71 16 39 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 40 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 41 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -63.99 338.06 2.30 -61.69 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.47 Total: 22.38 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: 3.79 Total: -24.85 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -3.62 Total: -81.00 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -1.11 Total: -20.22 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.75 Total: -4.11 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -63.99 2.30 -61.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137837709.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.755 kcal (2) G-P(sol) polarization free energy of solvation -63.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds