Wall clock time and date at job start Tue Mar 31 2020 05:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47431 * 2 1 4 4 N 1.46896 * 109.47136 * 180.44502 * 3 2 1 5 5 C 1.46894 * 111.00313 * 59.52178 * 4 3 2 6 6 C 1.50702 * 109.47216 * 66.04699 * 5 4 3 7 7 H 1.08002 * 119.99534 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00408 * 180.02562 * 6 5 4 9 9 N 1.31524 * 119.99994 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00386 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46999 * 59.99915 * 10 8 6 12 12 H 1.48497 * 109.47228 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46916 * 299.99938 * 10 8 6 14 14 C 1.46897 * 111.00223 * 295.56475 * 4 3 2 15 15 C 1.50703 * 109.47638 * 288.44674 * 14 4 3 16 16 C 1.38177 * 119.98319 * 103.05542 * 15 14 4 17 17 C 1.38689 * 119.96498 * 179.77165 * 16 15 14 18 18 O 1.35947 * 120.03058 * 180.25551 * 17 16 15 19 19 C 1.42896 * 116.99948 * 180.25352 * 18 17 16 20 20 C 1.38734 * 119.94127 * 0.51295 * 17 16 15 21 21 C 1.38130 * 119.96841 * 359.74307 * 20 17 16 22 22 C 1.38429 * 119.98167 * 283.34209 * 15 14 4 23 23 F 1.35097 * 119.97173 * 359.97438 * 22 15 14 24 24 H 1.09000 * 109.47185 * 300.00753 * 1 2 3 25 25 H 1.08999 * 109.47017 * 60.00147 * 1 2 3 26 26 H 1.08993 * 109.47082 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47541 * 239.99636 * 2 1 3 28 28 H 1.08999 * 109.47017 * 119.99853 * 2 1 3 29 29 H 1.08999 * 109.46985 * 60.44310 * 3 2 1 30 30 H 1.08998 * 109.46763 * 300.44153 * 3 2 1 31 31 H 1.09003 * 109.47754 * 186.04425 * 5 4 3 32 32 H 1.08997 * 109.47478 * 306.04398 * 5 4 3 33 33 H 0.96999 * 120.00049 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.47074 * 48.44460 * 14 4 3 35 35 H 1.09002 * 109.47770 * 168.44041 * 14 4 3 36 36 H 1.07995 * 120.01573 * 0.02562 * 16 15 14 37 37 H 1.09000 * 109.46639 * 180.02562 * 19 18 17 38 38 H 1.08998 * 109.47492 * 299.99900 * 19 18 17 39 39 H 1.09005 * 109.47128 * 60.00326 * 19 18 17 40 40 H 1.07995 * 120.01635 * 179.72238 * 20 17 16 41 41 H 1.07994 * 119.98722 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4425 -0.0108 5 6 4.0268 0.7500 -1.1982 6 6 3.6593 1.5295 -2.4345 7 1 3.0969 2.4473 -2.3468 8 6 4.0400 1.0704 -3.6775 9 7 4.7244 -0.0476 -3.7844 10 14 3.5839 2.0363 -5.2100 11 1 4.1762 3.3959 -5.1328 12 1 4.1074 1.3363 -6.4105 13 1 2.1059 2.1450 -5.3050 14 6 4.0445 0.8475 1.2209 15 6 3.8133 1.7884 2.3752 16 6 2.7955 1.5393 3.2760 17 6 2.5862 2.4029 4.3408 18 8 1.5885 2.1563 5.2308 19 6 1.4270 3.0909 6.2996 20 6 3.3924 3.5215 4.4940 21 6 4.4057 3.7709 3.5890 22 6 4.6170 2.9049 2.5292 23 9 5.6084 3.1500 1.6447 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6832 1.9541 0.8939 30 1 1.6703 1.9586 -0.8860 31 1 5.1116 0.6701 -1.1283 32 1 3.5921 -0.2479 -1.2553 33 1 4.9926 -0.3704 -4.6589 34 1 3.5396 -0.0986 1.4167 35 1 5.1138 0.6712 1.1044 36 1 2.1661 0.6704 3.1532 37 1 0.5990 2.7766 6.9350 38 1 2.3427 3.1300 6.8896 39 1 1.2163 4.0788 5.8898 40 1 3.2275 4.1972 5.3202 41 1 5.0332 4.6418 3.7077 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137996172.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:12 Heat of formation + Delta-G solvation = -58.671766 kcal Electronic energy + Delta-G solvation = -22457.435323 eV Core-core repulsion = 19059.189521 eV Total energy + Delta-G solvation = -3398.245802 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.34813 -40.10606 -38.04370 -36.62728 -32.76518 -32.51421 -31.11142 -29.84206 -27.41340 -27.00923 -26.07930 -23.86164 -22.67158 -22.08070 -21.23592 -19.28973 -17.66831 -17.11056 -16.79852 -16.15863 -15.91040 -15.29026 -14.90351 -14.74254 -14.60808 -14.20502 -14.13924 -13.50839 -13.44244 -13.16999 -12.80225 -12.63530 -12.38201 -12.21552 -11.81336 -11.51782 -11.28970 -11.12130 -10.96573 -10.92115 -10.76023 -10.70964 -10.61528 -10.41919 -9.86717 -9.69215 -9.20297 -8.87417 -8.37908 -7.94527 -7.13695 -5.97956 -3.98307 1.24178 1.37088 3.15713 3.36864 3.40642 3.44017 3.65138 4.47256 4.54556 4.68663 4.83172 4.92204 4.95201 5.11552 5.13853 5.25772 5.37567 5.39333 5.55448 5.56651 5.63543 5.81637 5.89417 5.97647 6.11158 6.17719 6.19675 6.25276 6.35359 6.44578 6.52826 6.54585 6.77988 6.82761 6.98407 7.32168 7.35604 7.44334 7.84119 8.13157 8.24296 8.58417 9.08422 9.65183 11.12869 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021109 B = 0.004663 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.120402 B = 6003.511017 C = 6756.558205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.164 4.164 3 C 0.066 3.934 4 N -0.526 5.526 5 C 0.190 3.810 6 C -0.502 4.502 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.085 3.915 15 C -0.057 4.057 16 C -0.119 4.119 17 C 0.109 3.891 18 O -0.317 6.317 19 C 0.028 3.972 20 C -0.188 4.188 21 C -0.122 4.122 22 C 0.090 3.910 23 F -0.128 7.128 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.028 0.972 32 H 0.001 0.999 33 H 0.261 0.739 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.135 0.865 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.131 0.869 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.394 4.447 18.690 19.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.202 4.202 3 C -0.063 4.063 4 N -0.249 5.249 5 C 0.066 3.934 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.540 5.540 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.043 4.043 15 C -0.059 4.059 16 C -0.138 4.138 17 C 0.064 3.936 18 O -0.231 6.231 19 C -0.067 4.067 20 C -0.207 4.207 21 C -0.141 4.141 22 C 0.070 3.930 23 F -0.106 7.106 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.047 0.953 32 H 0.019 0.981 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.153 0.847 37 H 0.116 0.884 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.149 0.851 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.224 4.669 18.476 19.760 hybrid contribution -0.207 -0.041 -0.852 0.878 sum -5.431 4.628 17.624 19.014 Atomic orbital electron populations 1.21644 0.96470 1.00667 1.01228 1.22170 0.95578 1.00344 1.02149 1.22062 0.88326 0.94526 1.01363 1.62350 1.06458 1.54799 1.01310 1.19808 0.95339 0.92583 0.85693 1.21085 1.34646 1.08245 0.90087 0.92037 1.24953 0.95381 0.95146 0.99032 1.69948 1.38645 1.21206 1.24164 0.86593 0.78677 0.80123 0.82209 1.20212 1.21427 1.20336 1.21021 1.01145 0.93326 0.88840 1.19900 0.93991 0.95569 0.96433 1.20185 0.99264 1.00804 0.93541 1.18920 0.89150 0.94656 0.90825 1.86079 1.49740 1.49982 1.37267 1.23027 1.02240 0.92975 0.88485 1.20943 0.98590 0.98918 1.02271 1.20883 0.99160 0.99754 0.94278 1.17398 0.89774 0.96106 0.89763 1.91536 1.58365 1.93848 1.66876 0.93516 0.92745 0.93615 0.90362 0.93152 0.92985 0.90168 0.95346 0.98149 0.92954 0.93672 0.90039 0.84679 0.88413 0.92777 0.92693 0.85077 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.91 37.15 0.37 -1.77 16 2 C -0.16 -2.93 5.29 -26.73 -0.14 -3.07 16 3 C 0.07 1.29 5.01 -3.82 -0.02 1.27 16 4 N -0.53 -11.42 4.65 -237.52 -1.10 -12.52 16 5 C 0.19 4.92 4.46 -4.98 -0.02 4.90 16 6 C -0.50 -14.12 8.52 -34.44 -0.29 -14.41 16 7 H 0.06 1.73 7.10 -52.49 -0.37 1.36 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 10 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.08 1.57 4.67 -4.98 -0.02 1.54 16 15 C -0.06 -0.94 4.70 -104.57 -0.49 -1.43 16 16 C -0.12 -1.72 8.86 -39.44 -0.35 -2.07 16 17 C 0.11 1.43 6.69 -39.23 -0.26 1.16 16 18 O -0.32 -3.73 10.50 -19.58 -0.21 -3.94 16 19 C 0.03 0.20 9.81 101.05 0.99 1.20 16 20 C -0.19 -2.21 9.04 -39.44 -0.36 -2.56 16 21 C -0.12 -1.60 10.02 -39.53 -0.40 -2.00 16 22 C 0.09 1.47 7.24 -39.42 -0.29 1.18 16 23 F -0.13 -2.39 16.72 2.25 0.04 -2.36 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.64 6.24 -51.93 -0.32 1.32 16 28 H 0.05 0.84 6.31 -51.93 -0.33 0.51 16 29 H 0.05 0.94 6.77 -51.93 -0.35 0.59 16 30 H 0.08 1.72 6.87 -51.93 -0.36 1.36 16 31 H 0.03 0.80 7.87 -51.93 -0.41 0.39 16 32 H 0.00 0.02 5.98 -51.93 -0.31 -0.29 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.05 0.78 5.80 -51.93 -0.30 0.48 16 35 H 0.08 1.56 7.71 -51.93 -0.40 1.16 16 36 H 0.14 1.85 8.01 -52.49 -0.42 1.43 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 39 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 40 H 0.13 1.14 6.30 -52.49 -0.33 0.80 16 41 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 334.91 15.07 5.05 5.05 Total: -1.00 -30.80 334.91 -7.84 -38.64 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.95 Total: -1.14 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -1.38 Total: -14.57 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: -0.37 Total: -38.57 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: -0.21 Total: -3.94 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.80 -7.84 -38.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137996172.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.034 kcal (2) G-P(sol) polarization free energy of solvation -30.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds