Wall clock time and date at job start Tue Mar 31 2020 05:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46673 * 2 1 4 4 C 1.53004 * 109.47014 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47202 * 179.97438 * 4 3 2 6 6 C 1.36938 * 119.99897 * 264.18804 * 5 4 3 7 7 H 1.08001 * 119.99539 * 188.01484 * 6 5 4 8 8 C 1.38813 * 120.00019 * 8.01674 * 6 5 4 9 9 N 1.31613 * 120.00121 * 25.49984 * 8 6 5 10 10 Si 1.86800 * 119.99655 * 205.50108 * 8 6 5 11 11 H 1.48498 * 109.47205 * 84.98669 * 10 8 6 12 12 H 1.48501 * 109.46924 * 204.98691 * 10 8 6 13 13 H 1.48498 * 109.47316 * 324.98453 * 10 8 6 14 14 C 1.46498 * 119.99936 * 84.18990 * 5 4 3 15 15 C 1.50707 * 109.47118 * 269.99743 * 14 5 4 16 16 C 1.38177 * 119.98097 * 104.72221 * 15 14 5 17 17 C 1.38691 * 119.96451 * 179.76896 * 16 15 14 18 18 O 1.35945 * 120.02544 * 180.25448 * 17 16 15 19 19 C 1.42899 * 116.99665 * 180.25149 * 18 17 16 20 20 C 1.38726 * 119.93920 * 0.51005 * 17 16 15 21 21 C 1.38126 * 119.96969 * 359.74836 * 20 17 16 22 22 C 1.38432 * 119.98621 * 285.00149 * 15 14 5 23 23 F 1.35098 * 119.96634 * 0.02562 * 22 15 14 24 24 H 1.09003 * 109.46557 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47345 * 300.00362 * 1 2 3 26 26 H 1.08998 * 109.47120 * 60.00427 * 1 2 3 27 27 H 1.08992 * 109.47345 * 239.99638 * 2 1 3 28 28 H 1.08998 * 109.47120 * 119.99573 * 2 1 3 29 29 H 1.08995 * 109.47915 * 59.99397 * 3 2 1 30 30 H 1.09006 * 109.46751 * 299.99036 * 3 2 1 31 31 H 1.08992 * 109.47281 * 59.99468 * 4 3 2 32 32 H 1.08998 * 109.46843 * 299.99612 * 4 3 2 33 33 H 0.96997 * 120.00036 * 180.02562 * 9 8 6 34 34 H 1.08995 * 109.47583 * 29.99946 * 14 5 4 35 35 H 1.09003 * 109.47293 * 150.00262 * 14 5 4 36 36 H 1.08001 * 120.01698 * 0.02562 * 16 15 14 37 37 H 1.09002 * 109.47272 * 180.02562 * 19 18 17 38 38 H 1.09001 * 109.47535 * 300.00280 * 19 18 17 39 39 H 1.09009 * 109.47251 * 60.00416 * 19 18 17 40 40 H 1.08005 * 120.01383 * 179.72372 * 20 17 16 41 41 H 1.08008 * 119.98270 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8239 -0.0013 6 6 4.3992 3.4290 -1.1814 7 1 4.8793 4.3964 -1.1732 8 6 4.1277 2.7991 -2.3882 9 7 3.1478 1.9240 -2.4680 10 14 5.1532 3.1933 -3.8990 11 1 6.3779 2.3534 -3.8989 12 1 4.3602 2.9121 -5.1226 13 1 5.5367 4.6277 -3.8764 14 6 4.1818 3.5576 1.2607 15 6 2.8914 4.2804 1.5499 16 6 2.0303 3.7961 2.5160 17 6 0.8451 4.4642 2.7853 18 8 -0.0006 3.9917 3.7391 19 6 -1.2057 4.7273 3.9596 20 6 0.5209 5.6120 2.0768 21 6 1.3811 6.0908 1.1079 22 6 2.5666 5.4259 0.8437 23 9 3.4066 5.8947 -0.1048 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9565 0.8898 30 1 1.6767 1.9563 -0.8901 31 1 3.9330 0.9289 -0.8907 32 1 3.9337 0.9287 0.8891 33 1 2.9583 1.4836 -3.3112 34 1 4.3953 2.8578 2.0686 35 1 4.9936 4.2809 1.1825 36 1 2.2820 2.9001 3.0639 37 1 -1.7878 4.2442 4.7443 38 1 -0.9599 5.7446 4.2640 39 1 -1.7885 4.7544 3.0388 40 1 -0.4038 6.1307 2.2824 41 1 1.1287 6.9842 0.5559 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137997625.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:44 Heat of formation + Delta-G solvation = -39.322262 kcal Electronic energy + Delta-G solvation = -23206.086195 eV Core-core repulsion = 19808.679450 eV Total energy + Delta-G solvation = -3397.406745 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.93043 -39.71456 -37.31648 -35.91722 -33.48513 -32.02354 -30.38957 -29.40282 -27.87409 -27.04183 -25.48092 -23.55916 -22.25868 -21.47447 -20.25021 -19.79008 -17.47735 -16.87739 -16.59323 -16.27058 -15.59974 -15.10260 -14.58799 -14.30152 -14.12142 -13.91237 -13.45932 -13.29650 -13.20847 -12.80941 -12.50841 -12.34745 -12.11252 -11.78346 -11.59317 -11.43663 -11.35329 -10.97058 -10.66144 -10.57846 -10.53113 -10.29641 -10.06823 -9.97860 -9.83342 -9.62334 -9.19733 -8.45078 -8.20964 -7.55935 -6.87629 -5.72728 -3.00722 1.65889 1.78245 3.43625 3.47165 3.51046 3.52289 4.05575 4.57270 4.94070 5.02760 5.16995 5.21471 5.22944 5.38402 5.46730 5.54062 5.64179 5.77668 5.86263 5.90310 6.01537 6.07548 6.20588 6.37616 6.50104 6.57881 6.58826 6.60980 6.67685 6.77957 6.81543 6.95516 7.00042 7.22660 7.26786 7.33643 7.69374 7.77346 7.85842 8.19412 8.38342 9.27431 9.87607 10.31840 11.30103 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.006934 C = 0.005469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.163322 B = 4037.046730 C = 5118.673032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C -0.124 4.124 4 C 0.169 3.831 5 N -0.582 5.582 6 C -0.242 4.242 7 H 0.080 0.920 8 C -0.002 4.002 9 N -0.890 5.890 10 Si 0.896 3.104 11 H -0.289 1.289 12 H -0.294 1.294 13 H -0.281 1.281 14 C 0.180 3.820 15 C -0.080 4.080 16 C -0.120 4.120 17 C 0.106 3.894 18 O -0.320 6.320 19 C 0.030 3.970 20 C -0.199 4.199 21 C -0.125 4.125 22 C 0.088 3.912 23 F -0.129 7.129 24 H 0.038 0.962 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.037 0.963 29 H 0.026 0.974 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.003 0.997 33 H 0.251 0.749 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.129 0.871 37 H 0.094 0.906 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.125 0.875 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.374 3.408 10.527 12.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C -0.163 4.163 4 C 0.044 3.956 5 N -0.299 5.299 6 C -0.370 4.370 7 H 0.098 0.902 8 C -0.200 4.200 9 N -0.535 5.535 10 Si 0.726 3.274 11 H -0.216 1.216 12 H -0.221 1.221 13 H -0.207 1.207 14 C 0.053 3.947 15 C -0.085 4.085 16 C -0.140 4.140 17 C 0.061 3.939 18 O -0.234 6.234 19 C -0.066 4.066 20 C -0.218 4.218 21 C -0.144 4.144 22 C 0.068 3.932 23 F -0.108 7.108 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.022 0.978 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.147 0.853 37 H 0.113 0.887 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.143 0.857 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.313 3.135 10.416 12.577 hybrid contribution -0.038 0.554 -1.182 1.306 sum -6.352 3.688 9.234 11.799 Atomic orbital electron populations 1.21722 0.97617 0.99682 1.01096 1.21394 0.94210 0.99519 1.00060 1.22223 0.98511 0.93846 1.01725 1.20974 0.92177 0.84011 0.98395 1.44565 1.74222 1.09744 1.01406 1.19434 1.30813 1.03523 0.83266 0.90179 1.24729 0.97923 1.00056 0.97249 1.70174 1.26974 1.31559 1.24835 0.86370 0.80435 0.77916 0.82633 1.21650 1.22096 1.20703 1.19928 0.90884 0.94117 0.89811 1.21175 1.01534 0.92740 0.93077 1.20072 0.92502 1.01110 1.00315 1.18941 0.90988 0.93721 0.90215 1.86054 1.31001 1.52257 1.54045 1.22965 0.85335 0.96670 1.01594 1.20786 1.01584 0.98663 1.00796 1.20810 0.93567 1.00937 0.99126 1.17357 0.89924 0.95187 0.90760 1.91506 1.69891 1.87700 1.61671 0.94336 0.93812 0.93077 0.92427 0.94413 0.95543 0.88558 0.89184 0.97849 0.93883 0.92671 0.92128 0.85270 0.88734 0.93023 0.92897 0.85711 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.91 37.16 0.37 -2.11 16 2 C -0.11 -2.20 5.93 -26.73 -0.16 -2.36 16 3 C -0.12 -2.78 4.89 -26.73 -0.13 -2.91 16 4 C 0.17 3.98 4.92 -4.04 -0.02 3.96 16 5 N -0.58 -14.05 2.52 -174.61 -0.44 -14.49 16 6 C -0.24 -6.43 8.64 -15.06 -0.13 -6.56 16 7 H 0.08 2.16 7.00 -52.49 -0.37 1.79 16 8 C 0.00 -0.06 4.89 -17.43 -0.09 -0.14 16 9 N -0.89 -24.42 8.60 55.49 0.48 -23.94 16 10 Si 0.90 21.74 29.62 -169.99 -5.04 16.71 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.18 3.70 5.56 -5.19 -0.03 3.67 16 15 C -0.08 -1.57 4.90 -104.57 -0.51 -2.09 16 16 C -0.12 -2.15 7.98 -39.44 -0.31 -2.46 16 17 C 0.11 1.75 6.69 -39.23 -0.26 1.49 16 18 O -0.32 -4.74 10.50 -19.57 -0.21 -4.94 16 19 C 0.03 0.30 9.81 101.05 0.99 1.29 16 20 C -0.20 -3.07 9.04 -39.44 -0.36 -3.43 16 21 C -0.13 -2.14 10.02 -39.54 -0.40 -2.54 16 22 C 0.09 1.77 7.20 -39.42 -0.28 1.49 16 23 F -0.13 -2.86 14.73 2.25 0.03 -2.83 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.03 0.58 5.94 -51.93 -0.31 0.27 16 30 H 0.10 2.54 6.32 -51.93 -0.33 2.22 16 31 H 0.09 2.36 5.85 -51.93 -0.30 2.06 16 32 H 0.00 0.07 7.98 -51.93 -0.41 -0.34 16 33 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.05 1.01 7.76 -51.93 -0.40 0.61 16 35 H 0.06 1.23 7.97 -51.93 -0.41 0.82 16 36 H 0.13 2.17 8.00 -52.49 -0.42 1.75 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 39 H 0.05 0.51 7.66 -51.92 -0.40 0.11 16 40 H 0.13 1.54 6.30 -52.48 -0.33 1.21 16 41 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 331.36 15.07 4.99 4.99 Total: -1.00 -28.70 331.36 -7.68 -36.38 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.18 Total: 0.83 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -1.32 Total: -12.70 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.04 Total: -38.43 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.21 Total: -4.94 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.03 Total: -2.83 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.04 Total: 16.71 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.70 -7.68 -36.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137997625.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.946 kcal (2) G-P(sol) polarization free energy of solvation -28.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds