Wall clock time and date at job start Tue Mar 31 2020 05:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46673 * 2 1 4 4 C 1.53004 * 109.47014 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47202 * 179.97438 * 4 3 2 6 6 C 1.36938 * 119.99897 * 264.18804 * 5 4 3 7 7 H 1.08001 * 119.99539 * 188.01484 * 6 5 4 8 8 C 1.38813 * 120.00019 * 8.01674 * 6 5 4 9 9 N 1.31613 * 120.00121 * 25.49984 * 8 6 5 10 10 Si 1.86800 * 119.99655 * 205.50108 * 8 6 5 11 11 H 1.48498 * 109.47205 * 84.98669 * 10 8 6 12 12 H 1.48501 * 109.46924 * 204.98691 * 10 8 6 13 13 H 1.48498 * 109.47316 * 324.98453 * 10 8 6 14 14 C 1.46498 * 119.99936 * 84.18990 * 5 4 3 15 15 C 1.50707 * 109.47118 * 269.99743 * 14 5 4 16 16 C 1.38177 * 119.98097 * 104.72221 * 15 14 5 17 17 C 1.38691 * 119.96451 * 179.76896 * 16 15 14 18 18 O 1.35945 * 120.02544 * 180.25448 * 17 16 15 19 19 C 1.42899 * 116.99665 * 180.25149 * 18 17 16 20 20 C 1.38726 * 119.93920 * 0.51005 * 17 16 15 21 21 C 1.38126 * 119.96969 * 359.74836 * 20 17 16 22 22 C 1.38432 * 119.98621 * 285.00149 * 15 14 5 23 23 F 1.35098 * 119.96634 * 0.02562 * 22 15 14 24 24 H 1.09003 * 109.46557 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47345 * 300.00362 * 1 2 3 26 26 H 1.08998 * 109.47120 * 60.00427 * 1 2 3 27 27 H 1.08992 * 109.47345 * 239.99638 * 2 1 3 28 28 H 1.08998 * 109.47120 * 119.99573 * 2 1 3 29 29 H 1.08995 * 109.47915 * 59.99397 * 3 2 1 30 30 H 1.09006 * 109.46751 * 299.99036 * 3 2 1 31 31 H 1.08992 * 109.47281 * 59.99468 * 4 3 2 32 32 H 1.08998 * 109.46843 * 299.99612 * 4 3 2 33 33 H 0.96997 * 120.00036 * 180.02562 * 9 8 6 34 34 H 1.08995 * 109.47583 * 29.99946 * 14 5 4 35 35 H 1.09003 * 109.47293 * 150.00262 * 14 5 4 36 36 H 1.08001 * 120.01698 * 0.02562 * 16 15 14 37 37 H 1.09002 * 109.47272 * 180.02562 * 19 18 17 38 38 H 1.09001 * 109.47535 * 300.00280 * 19 18 17 39 39 H 1.09009 * 109.47251 * 60.00416 * 19 18 17 40 40 H 1.08005 * 120.01383 * 179.72372 * 20 17 16 41 41 H 1.08008 * 119.98270 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8239 -0.0013 6 6 4.3992 3.4290 -1.1814 7 1 4.8793 4.3964 -1.1732 8 6 4.1277 2.7991 -2.3882 9 7 3.1478 1.9240 -2.4680 10 14 5.1532 3.1933 -3.8990 11 1 6.3779 2.3534 -3.8989 12 1 4.3602 2.9121 -5.1226 13 1 5.5367 4.6277 -3.8764 14 6 4.1818 3.5576 1.2607 15 6 2.8914 4.2804 1.5499 16 6 2.0303 3.7961 2.5160 17 6 0.8451 4.4642 2.7853 18 8 -0.0006 3.9917 3.7391 19 6 -1.2057 4.7273 3.9596 20 6 0.5209 5.6120 2.0768 21 6 1.3811 6.0908 1.1079 22 6 2.5666 5.4259 0.8437 23 9 3.4066 5.8947 -0.1048 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9565 0.8898 30 1 1.6767 1.9563 -0.8901 31 1 3.9330 0.9289 -0.8907 32 1 3.9337 0.9287 0.8891 33 1 2.9583 1.4836 -3.3112 34 1 4.3953 2.8578 2.0686 35 1 4.9936 4.2809 1.1825 36 1 2.2820 2.9001 3.0639 37 1 -1.7878 4.2442 4.7443 38 1 -0.9599 5.7446 4.2640 39 1 -1.7885 4.7544 3.0388 40 1 -0.4038 6.1307 2.2824 41 1 1.1287 6.9842 0.5559 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137997625.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:43 Heat of formation + Delta-G solvation = -53.706281 kcal Electronic energy + Delta-G solvation = -23206.709933 eV Core-core repulsion = 19808.679450 eV Total energy + Delta-G solvation = -3398.030483 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.52215 -40.95710 -38.77085 -37.51973 -35.10175 -33.77247 -31.97458 -30.77654 -29.52312 -28.06489 -27.15169 -25.26028 -23.64354 -23.06088 -21.75383 -21.52884 -18.79819 -18.60617 -18.09435 -17.68507 -17.00756 -16.60147 -16.14574 -15.86542 -15.56801 -15.32306 -15.28321 -15.01928 -14.68798 -14.20055 -13.91159 -13.63937 -13.45493 -13.29516 -13.25045 -13.03624 -12.79832 -12.67098 -12.42458 -12.20670 -11.88657 -11.86111 -11.72477 -11.66879 -11.53907 -11.33577 -11.02858 -10.28237 -9.77990 -8.93452 -8.77431 -7.74390 -5.04011 0.30570 0.39111 1.48053 1.50902 1.56817 2.39949 2.55267 2.72348 3.32603 3.60705 3.77118 3.82780 3.95698 4.19297 4.35587 4.36776 4.43851 4.46100 4.49335 4.53546 4.59594 4.77133 4.80089 4.84924 4.93178 5.05940 5.09347 5.12773 5.23727 5.28073 5.32481 5.34231 5.50206 5.55180 5.60343 5.73760 5.85962 5.94412 6.29500 6.41026 6.49478 7.27612 7.95613 8.35381 9.25843 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.006934 C = 0.005469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.163322 B = 4037.046730 C = 5118.673032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C -0.106 4.106 4 C 0.173 3.827 5 N -0.597 5.597 6 C -0.242 4.242 7 H 0.068 0.932 8 C -0.048 4.048 9 N -0.906 5.906 10 Si 0.946 3.054 11 H -0.289 1.289 12 H -0.300 1.300 13 H -0.282 1.282 14 C 0.179 3.821 15 C -0.091 4.091 16 C -0.128 4.128 17 C 0.112 3.888 18 O -0.331 6.331 19 C 0.017 3.983 20 C -0.186 4.186 21 C -0.124 4.124 22 C 0.049 3.951 23 F -0.151 7.151 24 H 0.064 0.936 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.029 0.971 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.021 0.979 33 H 0.243 0.757 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.137 0.863 37 H 0.121 0.879 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.164 0.836 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.295 3.659 12.547 15.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.148 4.148 3 C -0.146 4.146 4 C 0.049 3.951 5 N -0.316 5.316 6 C -0.372 4.372 7 H 0.086 0.914 8 C -0.243 4.243 9 N -0.553 5.553 10 Si 0.776 3.224 11 H -0.216 1.216 12 H -0.227 1.227 13 H -0.207 1.207 14 C 0.053 3.947 15 C -0.096 4.096 16 C -0.148 4.148 17 C 0.066 3.934 18 O -0.245 6.245 19 C -0.077 4.077 20 C -0.205 4.205 21 C -0.143 4.143 22 C 0.029 3.971 23 F -0.130 7.130 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.039 0.961 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.155 0.845 37 H 0.139 0.861 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.181 0.819 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.247 3.409 12.479 15.341 hybrid contribution 0.456 0.561 -1.592 1.748 sum -7.791 3.970 10.887 13.964 Atomic orbital electron populations 1.21646 0.95728 1.01311 1.00727 1.21335 0.95874 0.97378 1.00208 1.21944 0.97623 0.95374 0.99659 1.20844 0.92912 0.83779 0.97602 1.44555 1.75014 1.10328 1.01728 1.19446 1.30445 1.02886 0.84444 0.91370 1.25251 0.98977 1.00911 0.99140 1.70334 1.27771 1.32627 1.24547 0.85588 0.79120 0.77451 0.80204 1.21621 1.22663 1.20745 1.19958 0.91479 0.94355 0.88908 1.20964 1.00963 0.93309 0.94327 1.20161 0.93028 1.01489 1.00080 1.19010 0.90741 0.93421 0.90179 1.86056 1.32195 1.53184 1.53037 1.23366 0.83737 0.97666 1.02973 1.21194 1.02233 0.97991 0.99097 1.21105 0.92514 1.01278 0.99374 1.17812 0.91270 0.96577 0.91421 1.91442 1.70775 1.88033 1.62717 0.91718 0.93043 0.94528 0.93974 0.92478 0.95229 0.92677 0.92264 0.96055 0.94745 0.90605 0.92788 0.84474 0.86126 0.91283 0.92128 0.81881 0.83475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.47 9.91 71.98 0.71 -3.75 16 2 C -0.11 -4.16 5.93 30.60 0.18 -3.98 16 3 C -0.11 -4.80 4.89 30.60 0.15 -4.65 16 4 C 0.17 8.26 4.92 86.38 0.43 8.68 16 5 N -0.60 -29.43 2.52 -706.34 -1.78 -31.21 16 6 C -0.24 -13.29 8.64 84.03 0.73 -12.57 16 7 H 0.07 3.83 7.00 -2.91 -0.02 3.81 16 8 C -0.05 -2.65 4.89 84.86 0.42 -2.24 16 9 N -0.91 -51.43 8.60 21.65 0.19 -51.24 16 10 Si 0.95 46.06 29.62 68.60 2.03 48.10 16 11 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 12 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 13 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 14 C 0.18 7.43 5.56 85.64 0.48 7.91 16 15 C -0.09 -3.57 4.90 -19.83 -0.10 -3.66 16 16 C -0.13 -4.37 7.98 22.36 0.18 -4.19 16 17 C 0.11 3.37 6.69 22.49 0.15 3.53 16 18 O -0.33 -8.60 10.50 -92.93 -0.98 -9.58 16 19 C 0.02 0.26 9.81 113.37 1.11 1.38 16 20 C -0.19 -5.14 9.04 22.36 0.20 -4.94 16 21 C -0.12 -4.02 10.02 22.30 0.22 -3.80 16 22 C 0.05 1.98 7.20 22.37 0.16 2.14 16 23 F -0.15 -6.88 14.73 44.97 0.66 -6.22 16 24 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.03 1.28 5.94 -2.39 -0.01 1.26 16 30 H 0.05 2.98 6.32 -2.38 -0.02 2.96 16 31 H 0.06 3.20 5.85 -2.39 -0.01 3.18 16 32 H 0.02 0.92 7.98 -2.39 -0.02 0.90 16 33 H 0.24 13.66 8.31 -92.71 -0.77 12.89 16 34 H 0.08 2.75 7.76 -2.39 -0.02 2.73 16 35 H 0.05 2.26 7.97 -2.39 -0.02 2.24 16 36 H 0.14 4.37 8.00 -2.91 -0.02 4.34 16 37 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.07 0.88 7.66 -2.39 -0.02 0.86 16 39 H 0.06 0.89 7.66 -2.38 -0.02 0.87 16 40 H 0.16 3.20 6.30 -2.91 -0.02 3.18 16 41 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -63.80 331.36 6.15 -57.65 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 1.01 Total: 12.64 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: 5.02 Total: -20.14 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -1.60 Total: -82.45 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -0.98 Total: -9.58 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.66 Total: -6.22 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.10 kcal Total: -63.80 6.15 -57.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137997625.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.941 kcal (2) G-P(sol) polarization free energy of solvation -63.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds