Wall clock time and date at job start Tue Mar 31 2020 05:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46809 * 2 1 4 4 C 1.52999 * 109.46809 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.46887 * 179.97438 * 4 3 2 6 6 C 1.46901 * 110.99555 * 66.04943 * 5 4 3 7 7 C 1.50706 * 109.46772 * 199.55268 * 6 5 4 8 8 H 1.08000 * 119.99754 * 3.51825 * 7 6 5 9 9 C 1.37870 * 119.99909 * 183.51743 * 7 6 5 10 10 N 1.31513 * 120.00170 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 120.00326 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47017 * 90.00089 * 11 9 7 13 13 H 1.48495 * 109.47654 * 209.99882 * 11 9 7 14 14 H 1.48501 * 109.47175 * 330.00731 * 11 9 7 15 15 C 1.46901 * 111.00113 * 189.99939 * 5 4 3 16 16 C 1.50701 * 109.46837 * 73.10718 * 15 5 4 17 17 C 1.38230 * 120.01504 * 254.49780 * 16 15 5 18 18 C 1.38219 * 120.09132 * 180.25759 * 17 16 15 19 19 C 1.38300 * 120.12833 * 359.74662 * 18 17 16 20 20 C 1.38283 * 120.02865 * 359.97438 * 19 18 17 21 21 F 1.35101 * 120.04817 * 179.97438 * 20 19 18 22 22 C 1.38618 * 120.01438 * 74.22845 * 16 15 5 23 23 O 1.35952 * 120.06305 * 0.02562 * 22 16 15 24 24 H 1.08996 * 109.47233 * 60.00055 * 1 2 3 25 25 H 1.09002 * 109.46896 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47050 * 299.99947 * 1 2 3 27 27 H 1.08997 * 109.47287 * 240.00360 * 2 1 3 28 28 H 1.08996 * 109.47233 * 119.99945 * 2 1 3 29 29 H 1.08997 * 109.46902 * 60.00125 * 3 2 1 30 30 H 1.08996 * 109.47178 * 299.99978 * 3 2 1 31 31 H 1.08997 * 109.47287 * 60.00360 * 4 3 2 32 32 H 1.08997 * 109.47746 * 300.00057 * 4 3 2 33 33 H 1.08989 * 109.47496 * 319.55008 * 6 5 4 34 34 H 1.09004 * 109.47155 * 79.55820 * 6 5 4 35 35 H 0.97003 * 120.00885 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.47312 * 313.11211 * 15 5 4 37 37 H 1.08996 * 109.47374 * 193.10984 * 15 5 4 38 38 H 1.08000 * 119.95521 * 359.97438 * 17 16 15 39 39 H 1.08008 * 119.93366 * 179.77216 * 18 17 16 40 40 H 1.08005 * 119.98282 * 180.02562 * 19 18 17 41 41 H 0.96701 * 113.99625 * 264.62669 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0595 2.8276 -0.0013 6 6 3.7106 3.5098 1.2521 7 6 3.7815 5.0014 1.0487 8 1 4.0025 5.4031 0.0708 9 6 3.5644 5.8530 2.1109 10 7 3.6257 7.1547 1.9333 11 14 3.1815 5.1583 3.8021 12 1 4.4475 4.9494 4.5496 13 1 2.3193 6.1117 4.5455 14 1 2.4735 3.8611 3.6556 15 6 5.5083 2.8738 -0.2400 16 6 5.7894 2.5558 -1.6860 17 6 6.3107 1.3240 -2.0345 18 6 6.5742 1.0326 -3.3597 19 6 6.3122 1.9704 -4.3419 20 6 5.7853 3.2022 -3.9997 21 9 5.5298 4.1188 -4.9588 22 6 5.5201 3.4966 -2.6679 23 8 5.0027 4.7069 -2.3278 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9329 0.9290 -0.8909 32 1 3.9337 0.9286 0.8890 33 1 2.6993 3.2312 1.5480 34 1 4.4118 3.2159 2.0332 35 1 3.4733 7.7540 2.6807 36 1 6.0049 2.1412 0.3962 37 1 5.8833 3.8704 -0.0076 38 1 6.5168 0.5897 -1.2697 39 1 6.9850 0.0706 -3.6287 40 1 6.5186 1.7401 -5.3768 41 1 4.0393 4.7559 -2.3958 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138127667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:57 Heat of formation + Delta-G solvation = -70.853826 kcal Electronic energy + Delta-G solvation = -22528.404537 eV Core-core repulsion = 19129.630481 eV Total energy + Delta-G solvation = -3398.774056 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.66354 -39.56583 -37.18736 -36.28006 -34.41437 -32.53941 -31.21399 -29.45827 -28.94351 -27.38383 -24.92005 -22.82763 -22.34229 -21.69246 -20.80911 -19.74844 -18.02511 -16.97612 -16.80628 -16.36629 -15.75847 -15.35834 -14.99205 -14.65274 -14.58999 -14.17904 -13.87356 -13.53141 -13.40744 -13.13671 -12.79369 -12.46588 -12.25811 -12.12627 -11.95480 -11.84892 -11.54545 -11.20432 -11.02448 -10.88349 -10.69059 -10.53922 -10.40072 -10.14671 -9.87976 -9.82271 -9.27733 -8.61269 -8.52792 -8.37216 -7.46522 -6.01548 -3.98183 1.24788 1.29596 3.27616 3.36075 3.36719 3.59989 4.25215 4.43216 4.64556 4.69225 4.84869 4.99308 5.13955 5.25740 5.28484 5.28966 5.33264 5.40851 5.60235 5.75823 5.87165 5.90954 5.92544 6.00446 6.05261 6.11706 6.14131 6.16450 6.27546 6.38815 6.46354 6.54174 6.61501 6.69387 6.85373 6.90674 6.95201 7.64731 7.85560 7.99725 8.13111 8.68383 9.13704 9.60484 11.11417 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012128 B = 0.006365 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.156433 B = 4397.701399 C = 5856.809760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.117 4.117 4 C 0.052 3.948 5 N -0.520 5.520 6 C 0.160 3.840 7 C -0.505 4.505 8 H 0.089 0.911 9 C 0.069 3.931 10 N -0.898 5.898 11 Si 0.869 3.131 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.269 1.269 15 C 0.100 3.900 16 C -0.063 4.063 17 C -0.116 4.116 18 C -0.109 4.109 19 C -0.150 4.150 20 C 0.059 3.941 21 F -0.138 7.138 22 C 0.110 3.890 23 O -0.471 6.471 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.021 0.979 33 H 0.033 0.967 34 H -0.016 1.016 35 H 0.262 0.738 36 H 0.032 0.968 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.484 -15.194 -8.340 17.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.154 4.154 4 C -0.076 4.076 5 N -0.244 5.244 6 C 0.034 3.966 7 C -0.544 4.544 8 H 0.107 0.893 9 C -0.133 4.133 10 N -0.538 5.538 11 Si 0.697 3.303 12 H -0.205 1.205 13 H -0.213 1.213 14 H -0.194 1.194 15 C -0.027 4.027 16 C -0.065 4.065 17 C -0.135 4.135 18 C -0.127 4.127 19 C -0.169 4.169 20 C 0.039 3.961 21 F -0.117 7.117 22 C 0.063 3.937 23 O -0.282 6.282 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.039 0.961 33 H 0.050 0.950 34 H 0.002 0.998 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.123 0.877 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 1.785 -14.553 -8.538 16.966 hybrid contribution -0.334 -0.629 1.390 1.562 sum 1.450 -15.181 -7.148 16.843 Atomic orbital electron populations 1.21755 0.96109 1.00949 1.01987 1.21496 0.95680 0.97497 1.01340 1.21636 0.95082 0.95521 1.03202 1.22132 0.95429 0.90770 0.99305 1.61922 1.11205 1.12845 1.38400 1.20281 0.95374 0.95758 0.85199 1.21111 1.47299 0.87854 0.98120 0.89276 1.24888 0.95305 0.94741 0.98349 1.69893 1.50348 1.01965 1.31554 0.86963 0.78650 0.79194 0.85476 1.20487 1.21267 1.19385 1.20914 0.89831 1.02953 0.89015 1.20285 0.97395 0.92033 0.96752 1.21056 1.00007 0.96111 0.96326 1.20867 1.00475 0.99059 0.92344 1.20963 1.02610 0.92564 1.00760 1.18265 1.04289 0.88141 0.85381 1.91472 1.92158 1.65557 1.62484 1.18308 0.99341 0.87084 0.88968 1.84841 1.27097 1.26878 1.89380 0.92730 0.93279 0.92751 0.92444 0.92557 0.91400 0.91350 0.91893 0.96130 0.94950 0.99848 0.92785 0.94977 0.87707 0.85585 0.85359 0.85062 0.74232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.31 16 2 C -0.12 -1.48 5.93 -26.73 -0.16 -1.64 16 3 C -0.12 -1.77 5.18 -26.73 -0.14 -1.91 16 4 C 0.05 0.83 4.80 -3.82 -0.02 0.81 16 5 N -0.52 -9.98 4.36 -237.52 -1.04 -11.02 16 6 C 0.16 3.66 3.67 -4.97 -0.02 3.64 16 7 C -0.51 -13.74 9.06 -34.44 -0.31 -14.06 16 8 H 0.09 2.63 7.93 -52.49 -0.42 2.21 16 9 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 10 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 11 Si 0.87 21.18 27.40 -169.99 -4.66 16.52 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.27 -6.28 6.64 56.52 0.38 -5.90 16 15 C 0.10 1.82 4.53 -4.97 -0.02 1.80 16 16 C -0.06 -1.01 4.72 -104.48 -0.49 -1.50 16 17 C -0.12 -1.48 8.96 -39.59 -0.35 -1.84 16 18 C -0.11 -1.22 10.04 -39.57 -0.40 -1.62 16 19 C -0.15 -1.85 10.02 -39.54 -0.40 -2.25 16 20 C 0.06 0.91 7.31 -39.30 -0.29 0.62 16 21 F -0.14 -2.23 17.11 2.25 0.04 -2.20 16 22 C 0.11 1.86 6.68 -39.18 -0.26 1.60 16 23 O -0.47 -8.95 12.59 -19.59 -0.25 -9.20 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 1.16 6.25 -51.93 -0.32 0.83 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.92 6.75 -51.93 -0.35 0.57 16 32 H 0.02 0.33 8.12 -51.93 -0.42 -0.09 16 33 H 0.03 0.75 5.18 -51.94 -0.27 0.49 16 34 H -0.02 -0.38 7.24 -51.93 -0.38 -0.76 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.03 0.53 7.84 -51.93 -0.41 0.13 16 37 H 0.10 2.24 7.21 -51.93 -0.37 1.87 16 38 H 0.13 1.36 8.00 -52.49 -0.42 0.94 16 39 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 41 H 0.40 6.76 9.06 45.56 0.41 7.17 16 LS Contribution 339.44 15.07 5.12 5.12 Total: -1.00 -30.19 339.44 -8.09 -38.28 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -5.49 Total: 4.73 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -2.59 Total: -15.79 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: -0.26 Total: -37.46 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.25 Total: -9.20 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.66 Total: 16.52 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.19 -8.09 -38.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138127667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.573 kcal (2) G-P(sol) polarization free energy of solvation -30.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds