Wall clock time and date at job start Tue Mar 31 2020 05:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47112 * 2 1 4 4 N 1.46901 * 109.46914 * 174.80204 * 3 2 1 5 5 C 1.46901 * 110.99927 * 197.91741 * 4 3 2 6 6 C 1.50703 * 109.46909 * 66.04054 * 5 4 3 7 7 H 1.07997 * 120.00150 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99888 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99946 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00204 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47482 * 89.99864 * 10 8 6 12 12 H 1.48502 * 109.47090 * 210.00210 * 10 8 6 13 13 H 1.48506 * 109.46915 * 329.99835 * 10 8 6 14 14 C 1.46895 * 111.00393 * 73.95928 * 4 3 2 15 15 C 1.50699 * 109.47319 * 199.84738 * 14 4 3 16 16 C 1.38165 * 120.01962 * 254.60667 * 15 14 4 17 17 C 1.38435 * 120.03283 * 179.79323 * 16 15 14 18 18 F 1.35102 * 119.97401 * 180.25370 * 17 16 15 19 19 C 1.38477 * 120.05671 * 0.46265 * 17 16 15 20 20 C 1.38122 * 120.03140 * 359.78719 * 19 17 16 21 21 C 1.38685 * 120.01188 * 74.88496 * 15 14 4 22 22 O 1.35943 * 120.03019 * 359.97438 * 21 15 14 23 23 C 1.42900 * 117.00368 * 184.70232 * 22 21 15 24 24 H 1.09000 * 109.47051 * 64.72032 * 1 2 3 25 25 H 1.09002 * 109.47516 * 184.71937 * 1 2 3 26 26 H 1.08996 * 109.46763 * 304.72136 * 1 2 3 27 27 H 1.09004 * 109.46948 * 239.99777 * 2 1 3 28 28 H 1.08995 * 109.46779 * 120.00391 * 2 1 3 29 29 H 1.08998 * 109.47535 * 54.79747 * 3 2 1 30 30 H 1.09001 * 109.47284 * 294.79609 * 3 2 1 31 31 H 1.08998 * 109.47059 * 186.04164 * 5 4 3 32 32 H 1.09004 * 109.47288 * 306.04424 * 5 4 3 33 33 H 0.96999 * 120.00244 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47625 * 319.85588 * 14 4 3 35 35 H 1.09007 * 109.46969 * 79.85412 * 14 4 3 36 36 H 1.08003 * 119.98591 * 0.02562 * 16 15 14 37 37 H 1.08005 * 119.98314 * 179.77424 * 19 17 16 38 38 H 1.08000 * 120.01488 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.46946 * 300.00456 * 23 22 21 40 40 H 1.09002 * 109.46951 * 59.99813 * 23 22 21 41 41 H 1.08992 * 109.47548 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5037 1.4443 0.1255 5 6 3.9939 2.7620 0.5512 6 6 3.5135 3.0485 1.9506 7 1 2.9054 2.3240 2.4718 8 6 3.8514 4.2352 2.5661 9 7 4.5925 5.1173 1.9316 10 14 3.2567 4.5901 4.3009 11 1 4.2542 4.0865 5.2789 12 1 3.0875 6.0550 4.4762 13 1 1.9554 3.9110 4.5267 14 6 4.1403 1.0264 -1.1306 15 6 5.5500 0.5719 -0.8525 16 6 6.6172 1.3779 -1.1992 17 6 7.9121 0.9625 -0.9399 18 9 8.9546 1.7538 -1.2749 19 6 8.1399 -0.2653 -0.3415 20 6 7.0750 -1.0753 0.0016 21 6 5.7767 -0.6582 -0.2535 22 8 4.7277 -1.4545 0.0836 23 6 5.0287 -2.6598 0.7897 24 1 -0.3633 0.4389 -0.9292 25 1 -0.3634 -1.0242 0.0846 26 1 -0.3633 0.5853 0.8447 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6026 1.9825 0.8397 30 1 1.7548 1.9287 -0.9329 31 1 5.0837 2.7676 0.5328 32 1 3.6151 3.5270 -0.1266 33 1 4.8299 5.9523 2.3644 34 1 3.5737 0.2052 -1.5696 35 1 4.1599 1.8664 -1.8251 36 1 6.4411 2.3341 -1.6694 37 1 9.1508 -0.5898 -0.1430 38 1 7.2530 -2.0330 0.4679 39 1 5.6857 -3.2823 0.1823 40 1 5.5252 -2.4163 1.7290 41 1 4.1050 -3.2004 0.9960 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138373520.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:27 Heat of formation + Delta-G solvation = -61.822984 kcal Electronic energy + Delta-G solvation = -22677.733369 eV Core-core repulsion = 19279.350919 eV Total energy + Delta-G solvation = -3398.382449 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.48489 -39.94678 -37.33870 -36.52811 -33.10240 -32.57139 -30.97605 -29.49382 -27.40507 -27.00562 -25.89800 -23.99940 -22.04372 -21.70519 -20.99082 -19.71569 -17.75134 -16.78778 -16.69332 -16.27575 -15.60158 -15.07603 -14.89502 -14.50264 -14.46771 -14.40602 -14.12869 -13.61309 -13.24644 -12.88903 -12.71870 -12.52835 -12.08748 -12.00506 -11.74450 -11.63971 -11.42271 -11.27305 -11.00134 -10.74794 -10.65923 -10.63282 -10.46840 -10.22353 -9.94953 -9.70322 -9.13756 -8.70497 -8.38160 -7.71459 -7.15269 -5.97783 -3.98141 1.43590 1.54627 3.34301 3.40201 3.43438 3.51531 3.85220 4.46730 4.58387 4.85071 4.94913 5.10874 5.18170 5.30341 5.35868 5.38128 5.52312 5.53656 5.58526 5.64415 5.75980 5.87241 5.92932 6.02098 6.17538 6.22014 6.32505 6.36610 6.38094 6.40741 6.53172 6.68283 6.82477 6.94412 7.01966 7.37865 7.41115 7.64496 7.86545 8.16848 8.29703 8.61662 9.09592 9.65332 11.13119 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011203 B = 0.006927 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.783560 B = 4041.203893 C = 5491.722728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.064 3.936 4 N -0.525 5.525 5 C 0.192 3.808 6 C -0.503 4.503 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.099 3.901 15 C -0.062 4.062 16 C -0.103 4.103 17 C 0.057 3.943 18 F -0.146 7.146 19 C -0.122 4.122 20 C -0.190 4.190 21 C 0.143 3.857 22 O -0.293 6.293 23 C 0.028 3.972 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.015 0.985 31 H 0.032 0.968 32 H -0.012 1.012 33 H 0.260 0.740 34 H 0.076 0.924 35 H 0.034 0.966 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.172 -14.228 -5.974 15.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.064 4.064 4 N -0.249 5.249 5 C 0.067 3.933 6 C -0.542 4.542 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.029 4.029 15 C -0.063 4.063 16 C -0.123 4.123 17 C 0.037 3.963 18 F -0.125 7.125 19 C -0.141 4.141 20 C -0.208 4.208 21 C 0.096 3.904 22 O -0.205 6.205 23 C -0.068 4.068 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.034 0.966 31 H 0.050 0.950 32 H 0.006 0.994 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.192 -14.321 -5.632 15.435 hybrid contribution 0.098 0.956 0.509 1.087 sum 1.291 -13.365 -5.123 14.371 Atomic orbital electron populations 1.21748 0.96880 1.00695 1.01387 1.21499 0.93961 0.97821 1.01973 1.22020 0.88828 0.95411 1.00187 1.62063 1.04287 1.32318 1.26258 1.19767 0.96085 0.82198 0.95298 1.21151 1.31879 1.01879 0.99272 0.91921 1.24976 0.95432 0.96244 0.97964 1.69959 1.37569 1.08781 1.37461 0.86550 0.79137 0.77176 0.84850 1.20744 1.21376 1.19887 1.20847 0.90454 0.98916 0.92713 1.19044 0.96101 0.91341 0.99843 1.20923 0.90148 1.00168 1.01023 1.17478 0.83987 0.90751 1.04036 1.91459 1.56615 1.73577 1.90810 1.20758 0.99759 0.93306 1.00267 1.20969 0.91431 1.01605 1.06832 1.18720 0.86070 0.90680 0.94894 1.86203 1.30862 1.32411 1.71045 1.23008 1.02697 0.85293 0.95790 0.93459 0.93457 0.92759 0.93001 0.91361 0.89653 0.96632 0.94966 0.99395 0.93023 0.90599 0.94815 0.84374 0.85137 0.85003 0.93363 0.92728 0.88555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.11 -1.82 5.95 -26.73 -0.16 -1.98 16 3 C 0.06 1.23 4.80 -3.83 -0.02 1.22 16 4 N -0.53 -11.28 4.36 -237.52 -1.03 -12.32 16 5 C 0.19 5.00 4.55 -4.97 -0.02 4.98 16 6 C -0.50 -14.20 8.26 -34.44 -0.28 -14.49 16 7 H 0.06 1.76 7.28 -52.49 -0.38 1.38 16 8 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 10 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 14 C 0.10 1.82 4.56 -4.98 -0.02 1.80 16 15 C -0.06 -1.11 4.83 -104.48 -0.50 -1.62 16 16 C -0.10 -1.83 9.00 -39.54 -0.36 -2.18 16 17 C 0.06 0.95 7.30 -39.42 -0.29 0.66 16 18 F -0.15 -2.49 17.27 2.25 0.04 -2.45 16 19 C -0.12 -1.77 10.02 -39.54 -0.40 -2.16 16 20 C -0.19 -2.68 9.05 -39.44 -0.36 -3.03 16 21 C 0.14 2.33 6.65 -39.23 -0.26 2.07 16 22 O -0.29 -4.48 9.83 -19.56 -0.19 -4.67 16 23 C 0.03 0.29 9.83 101.05 0.99 1.29 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.78 6.80 -51.93 -0.35 0.43 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.09 1.84 6.58 -51.93 -0.34 1.50 16 30 H 0.02 0.29 8.03 -51.93 -0.42 -0.12 16 31 H 0.03 0.91 6.91 -51.93 -0.36 0.55 16 32 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.08 1.27 6.31 -51.93 -0.33 0.94 16 35 H 0.03 0.62 7.80 -51.93 -0.41 0.22 16 36 H 0.14 2.40 8.00 -52.48 -0.42 1.98 16 37 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 38 H 0.13 1.45 6.30 -52.49 -0.33 1.12 16 39 H 0.05 0.41 7.45 -51.93 -0.39 0.03 16 40 H 0.05 0.57 7.86 -51.93 -0.41 0.17 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 340.27 15.07 5.13 5.13 Total: -1.00 -31.07 340.27 -7.97 -39.04 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -6.22 Total: -1.79 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -1.41 Total: -13.60 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: -0.30 Total: -38.57 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.19 Total: -4.67 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.07 -7.97 -39.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138373520.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.783 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds