Wall clock time and date at job start Tue Mar 31 2020 05:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47112 * 2 1 4 4 N 1.46901 * 109.46914 * 174.80204 * 3 2 1 5 5 C 1.46901 * 110.99927 * 197.91741 * 4 3 2 6 6 C 1.50703 * 109.46909 * 66.04054 * 5 4 3 7 7 H 1.07997 * 120.00150 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99888 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99946 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00204 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47482 * 89.99864 * 10 8 6 12 12 H 1.48502 * 109.47090 * 210.00210 * 10 8 6 13 13 H 1.48506 * 109.46915 * 329.99835 * 10 8 6 14 14 C 1.46895 * 111.00393 * 73.95928 * 4 3 2 15 15 C 1.50699 * 109.47319 * 199.84738 * 14 4 3 16 16 C 1.38165 * 120.01962 * 254.60667 * 15 14 4 17 17 C 1.38435 * 120.03283 * 179.79323 * 16 15 14 18 18 F 1.35102 * 119.97401 * 180.25370 * 17 16 15 19 19 C 1.38477 * 120.05671 * 0.46265 * 17 16 15 20 20 C 1.38122 * 120.03140 * 359.78719 * 19 17 16 21 21 C 1.38685 * 120.01188 * 74.88496 * 15 14 4 22 22 O 1.35943 * 120.03019 * 359.97438 * 21 15 14 23 23 C 1.42900 * 117.00368 * 184.70232 * 22 21 15 24 24 H 1.09000 * 109.47051 * 64.72032 * 1 2 3 25 25 H 1.09002 * 109.47516 * 184.71937 * 1 2 3 26 26 H 1.08996 * 109.46763 * 304.72136 * 1 2 3 27 27 H 1.09004 * 109.46948 * 239.99777 * 2 1 3 28 28 H 1.08995 * 109.46779 * 120.00391 * 2 1 3 29 29 H 1.08998 * 109.47535 * 54.79747 * 3 2 1 30 30 H 1.09001 * 109.47284 * 294.79609 * 3 2 1 31 31 H 1.08998 * 109.47059 * 186.04164 * 5 4 3 32 32 H 1.09004 * 109.47288 * 306.04424 * 5 4 3 33 33 H 0.96999 * 120.00244 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47625 * 319.85588 * 14 4 3 35 35 H 1.09007 * 109.46969 * 79.85412 * 14 4 3 36 36 H 1.08003 * 119.98591 * 0.02562 * 16 15 14 37 37 H 1.08005 * 119.98314 * 179.77424 * 19 17 16 38 38 H 1.08000 * 120.01488 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.46946 * 300.00456 * 23 22 21 40 40 H 1.09002 * 109.46951 * 59.99813 * 23 22 21 41 41 H 1.08992 * 109.47548 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5037 1.4443 0.1255 5 6 3.9939 2.7620 0.5512 6 6 3.5135 3.0485 1.9506 7 1 2.9054 2.3240 2.4718 8 6 3.8514 4.2352 2.5661 9 7 4.5925 5.1173 1.9316 10 14 3.2567 4.5901 4.3009 11 1 4.2542 4.0865 5.2789 12 1 3.0875 6.0550 4.4762 13 1 1.9554 3.9110 4.5267 14 6 4.1403 1.0264 -1.1306 15 6 5.5500 0.5719 -0.8525 16 6 6.6172 1.3779 -1.1992 17 6 7.9121 0.9625 -0.9399 18 9 8.9546 1.7538 -1.2749 19 6 8.1399 -0.2653 -0.3415 20 6 7.0750 -1.0753 0.0016 21 6 5.7767 -0.6582 -0.2535 22 8 4.7277 -1.4545 0.0836 23 6 5.0287 -2.6598 0.7897 24 1 -0.3633 0.4389 -0.9292 25 1 -0.3634 -1.0242 0.0846 26 1 -0.3633 0.5853 0.8447 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6026 1.9825 0.8397 30 1 1.7548 1.9287 -0.9329 31 1 5.0837 2.7676 0.5328 32 1 3.6151 3.5270 -0.1266 33 1 4.8299 5.9523 2.3644 34 1 3.5737 0.2052 -1.5696 35 1 4.1599 1.8664 -1.8251 36 1 6.4411 2.3341 -1.6694 37 1 9.1508 -0.5898 -0.1430 38 1 7.2530 -2.0330 0.4679 39 1 5.6857 -3.2823 0.1823 40 1 5.5252 -2.4163 1.7290 41 1 4.1050 -3.2004 0.9960 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138373520.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:26 Heat of formation + Delta-G solvation = -80.431030 kcal Electronic energy + Delta-G solvation = -22678.540274 eV Core-core repulsion = 19279.350919 eV Total energy + Delta-G solvation = -3399.189355 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.79881 -41.15295 -38.79273 -37.86838 -34.93356 -34.16324 -32.43932 -30.72444 -29.23143 -28.06097 -27.24799 -25.78953 -23.32288 -23.24629 -22.38692 -21.28701 -18.89466 -18.57040 -18.07403 -17.82333 -16.80194 -16.70782 -16.28892 -16.09384 -15.98717 -15.56398 -15.32862 -15.26652 -14.77057 -14.19141 -13.99768 -13.92657 -13.67973 -13.52109 -13.21633 -12.92379 -12.79341 -12.65752 -12.61123 -12.49300 -12.37781 -11.96141 -11.78088 -11.71177 -11.49659 -11.32630 -11.17023 -10.59605 -9.98661 -8.96809 -8.91855 -8.18523 -6.27691 0.19098 0.28714 1.39114 1.40715 1.51673 2.39288 2.43540 2.63225 3.13798 3.29799 3.48502 3.71662 3.78194 4.12207 4.18756 4.23871 4.35310 4.40837 4.51231 4.52000 4.54237 4.66959 4.73130 4.79562 4.83015 4.91778 4.99273 5.04570 5.14898 5.16151 5.23231 5.24913 5.32794 5.38678 5.50359 5.59816 5.67940 5.78470 6.09606 6.42734 6.54195 6.68932 6.89336 7.41289 8.92442 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011203 B = 0.006927 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.783560 B = 4041.203893 C = 5491.722728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C 0.062 3.938 4 N -0.527 5.527 5 C 0.211 3.789 6 C -0.516 4.516 7 H 0.062 0.938 8 C 0.000 4.000 9 N -0.935 5.935 10 Si 0.965 3.035 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.262 1.262 14 C 0.104 3.896 15 C -0.091 4.091 16 C -0.121 4.121 17 C 0.035 3.965 18 F -0.152 7.152 19 C -0.110 4.110 20 C -0.181 4.181 21 C 0.140 3.860 22 O -0.312 6.312 23 C 0.017 3.983 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.016 0.984 31 H 0.005 0.995 32 H -0.045 1.045 33 H 0.262 0.738 34 H 0.096 0.904 35 H 0.023 0.977 36 H 0.123 0.877 37 H 0.164 0.836 38 H 0.172 0.828 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.831 -16.973 -4.837 17.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.139 4.139 3 C -0.065 4.065 4 N -0.250 5.250 5 C 0.085 3.915 6 C -0.555 4.555 7 H 0.080 0.920 8 C -0.197 4.197 9 N -0.575 5.575 10 Si 0.790 3.210 11 H -0.200 1.200 12 H -0.208 1.208 13 H -0.187 1.187 14 C -0.024 4.024 15 C -0.092 4.092 16 C -0.141 4.141 17 C 0.015 3.985 18 F -0.131 7.131 19 C -0.129 4.129 20 C -0.199 4.199 21 C 0.093 3.907 22 O -0.224 6.224 23 C -0.078 4.078 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.035 0.965 31 H 0.023 0.977 32 H -0.028 1.028 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.042 0.958 36 H 0.141 0.859 37 H 0.182 0.818 38 H 0.189 0.811 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.837 -17.095 -4.504 17.698 hybrid contribution 0.212 1.729 0.115 1.746 sum 1.048 -15.366 -4.389 16.015 Atomic orbital electron populations 1.21711 0.94668 1.02249 1.01573 1.21370 0.95736 0.94708 1.02042 1.22080 0.87515 0.97924 0.99019 1.62030 1.05605 1.29053 1.28332 1.19351 0.94207 0.83789 0.94177 1.21440 1.31796 1.02097 1.00140 0.92022 1.25896 0.95435 0.95977 1.02424 1.70100 1.38754 1.09276 1.39415 0.85443 0.79045 0.77184 0.79331 1.20045 1.20823 1.18651 1.20843 0.91407 0.99009 0.91130 1.19043 0.95371 0.92828 1.02002 1.20921 0.91233 0.99968 1.01957 1.17706 0.83390 0.91970 1.05392 1.91434 1.56652 1.74007 1.91043 1.21155 1.01652 0.91864 0.98212 1.21377 0.90119 1.02793 1.05605 1.18838 0.87394 0.90224 0.94221 1.86170 1.31048 1.33839 1.71364 1.23353 1.04566 0.83956 0.95881 0.92625 0.91008 0.93469 0.91829 0.92235 0.92313 0.96536 0.97717 1.02772 0.92875 0.88620 0.95850 0.85897 0.81829 0.81109 0.90731 0.92541 0.86677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.91 71.98 0.71 -2.85 16 2 C -0.10 -3.06 5.95 30.59 0.18 -2.88 16 3 C 0.06 2.46 4.80 86.30 0.41 2.88 16 4 N -0.53 -23.31 4.36 -905.37 -3.94 -27.25 16 5 C 0.21 11.61 4.55 85.56 0.39 12.00 16 6 C -0.52 -29.99 8.26 25.60 0.21 -29.78 16 7 H 0.06 3.52 7.28 -2.91 -0.02 3.50 16 8 C 0.00 0.02 5.46 84.65 0.46 0.48 16 9 N -0.93 -57.88 13.29 21.45 0.28 -57.60 16 10 Si 0.97 45.34 29.54 68.60 2.03 47.36 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 13 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 14 C 0.10 3.95 4.56 85.56 0.39 4.34 16 15 C -0.09 -3.34 4.83 -19.77 -0.10 -3.43 16 16 C -0.12 -4.52 9.00 22.30 0.20 -4.32 16 17 C 0.03 1.17 7.30 22.37 0.16 1.33 16 18 F -0.15 -5.30 17.27 44.97 0.78 -4.52 16 19 C -0.11 -2.96 10.02 22.30 0.22 -2.74 16 20 C -0.18 -4.58 9.05 22.36 0.20 -4.38 16 21 C 0.14 4.39 6.65 22.49 0.15 4.54 16 22 O -0.31 -8.86 9.83 -92.91 -0.91 -9.78 16 23 C 0.02 0.30 9.83 113.37 1.11 1.41 16 24 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.06 1.79 6.80 -2.39 -0.02 1.77 16 28 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.06 2.61 6.58 -2.39 -0.02 2.59 16 30 H 0.02 0.64 8.03 -2.39 -0.02 0.62 16 31 H 0.00 0.28 6.91 -2.39 -0.02 0.27 16 32 H -0.05 -2.73 8.12 -2.39 -0.02 -2.75 16 33 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.10 3.19 6.31 -2.39 -0.02 3.17 16 35 H 0.02 0.92 7.80 -2.38 -0.02 0.90 16 36 H 0.12 4.74 8.00 -2.91 -0.02 4.72 16 37 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 38 H 0.17 2.94 6.30 -2.91 -0.02 2.92 16 39 H 0.07 0.94 7.45 -2.39 -0.02 0.93 16 40 H 0.06 0.99 7.86 -2.39 -0.02 0.97 16 41 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -69.50 340.27 3.96 -65.54 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 1.01 Total: 9.63 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: 4.72 Total: -23.40 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -3.66 Total: -84.85 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.91 Total: -9.78 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.78 Total: -4.52 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -69.50 3.96 -65.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138373520.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.890 kcal (2) G-P(sol) polarization free energy of solvation -69.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds