Wall clock time and date at job start Tue Mar 31 2020 05:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46888 * 2 1 4 4 C 1.53001 * 109.46888 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47170 * 185.34092 * 4 3 2 6 6 C 1.36936 * 119.99789 * 96.31777 * 5 4 3 7 7 H 1.07997 * 120.00034 * 172.68535 * 6 5 4 8 8 C 1.38818 * 120.00059 * 352.68108 * 6 5 4 9 9 N 1.31614 * 119.99990 * 326.08389 * 8 6 5 10 10 Si 1.86801 * 119.99569 * 146.07991 * 8 6 5 11 11 H 1.48505 * 109.46975 * 94.99006 * 10 8 6 12 12 H 1.48496 * 109.47034 * 214.98767 * 10 8 6 13 13 H 1.48494 * 109.47229 * 334.99067 * 10 8 6 14 14 C 1.46492 * 120.00052 * 276.31483 * 5 4 3 15 15 C 1.50692 * 109.47450 * 264.55880 * 14 5 4 16 16 C 1.38173 * 120.01782 * 261.70129 * 15 14 5 17 17 C 1.38436 * 120.03126 * 180.02562 * 16 15 14 18 18 F 1.35101 * 119.96779 * 179.97438 * 17 16 15 19 19 C 1.38470 * 120.06116 * 359.97322 * 17 16 15 20 20 C 1.38130 * 120.03238 * 359.72786 * 19 17 16 21 21 C 1.38685 * 120.01628 * 81.67552 * 15 14 5 22 22 O 1.35949 * 120.02798 * 0.02571 * 21 15 14 23 23 C 1.42908 * 116.99939 * 179.97438 * 22 21 15 24 24 H 1.08999 * 109.47185 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47496 * 300.00335 * 1 2 3 26 26 H 1.08999 * 109.47203 * 60.00060 * 1 2 3 27 27 H 1.08994 * 109.47182 * 239.99914 * 2 1 3 28 28 H 1.08996 * 109.46703 * 119.99922 * 2 1 3 29 29 H 1.08998 * 109.46920 * 60.00306 * 3 2 1 30 30 H 1.08999 * 109.47150 * 299.99972 * 3 2 1 31 31 H 1.08999 * 109.47346 * 65.33729 * 4 3 2 32 32 H 1.09004 * 109.47076 * 305.34021 * 4 3 2 33 33 H 0.97005 * 119.99656 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.47105 * 144.55852 * 14 5 4 35 35 H 1.09005 * 109.47004 * 24.56325 * 14 5 4 36 36 H 1.08000 * 119.98457 * 359.97311 * 16 15 14 37 37 H 1.08000 * 119.98808 * 180.02562 * 19 17 16 38 38 H 1.07998 * 120.02010 * 180.30002 * 20 19 17 39 39 H 1.08997 * 109.47137 * 180.02562 * 23 22 21 40 40 H 1.08995 * 109.47157 * 300.00151 * 23 22 21 41 41 H 1.09006 * 109.46764 * 60.00012 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8178 0.1292 6 6 4.4090 3.3076 1.3589 7 1 4.8787 4.2767 1.4403 8 6 4.1607 2.5586 2.5010 9 7 3.0935 1.7909 2.5654 10 14 5.3412 2.6403 3.9464 11 1 4.8541 3.6433 4.9273 12 1 5.4190 1.3082 4.5979 13 1 6.6889 3.0345 3.4631 14 6 4.1714 3.6689 -1.0577 15 6 5.5814 3.6095 -1.5860 16 6 6.4810 4.6091 -1.2689 17 6 7.7763 4.5551 -1.7544 18 9 8.6548 5.5335 -1.4440 19 6 8.1724 3.4993 -2.5580 20 6 7.2769 2.4954 -2.8716 21 6 5.9769 2.5512 -2.3903 22 8 5.0928 1.5670 -2.7031 23 6 5.5688 0.5081 -3.5365 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9337 1.0136 -0.9330 32 1 3.9329 0.8482 0.8392 33 1 2.9199 1.2679 3.3637 34 1 3.9259 4.6971 -0.7922 35 1 3.4810 3.3169 -1.8243 36 1 6.1734 5.4334 -0.6425 37 1 9.1833 3.4581 -2.9359 38 1 7.5874 1.6695 -3.4944 39 1 4.7652 -0.2079 -3.7088 40 1 5.9007 0.9177 -4.4905 41 1 6.4035 0.0071 -3.0461 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138374915.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:00 Heat of formation + Delta-G solvation = -41.420670 kcal Electronic energy + Delta-G solvation = -22870.199865 eV Core-core repulsion = 19472.702127 eV Total energy + Delta-G solvation = -3397.497739 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.46588 -39.84668 -36.97815 -36.09545 -33.56238 -32.10188 -30.35628 -29.35903 -27.92123 -26.97987 -25.67639 -23.51758 -22.10423 -21.64635 -20.49254 -19.66067 -17.75298 -16.93407 -16.53369 -16.18821 -15.67269 -15.06965 -14.87769 -14.40025 -14.20911 -14.12026 -13.54160 -13.43882 -13.24706 -12.88725 -12.62793 -12.49098 -12.05169 -11.74476 -11.58487 -11.43340 -11.38885 -10.96839 -10.66909 -10.61333 -10.57434 -10.33815 -10.05797 -9.99201 -9.88279 -9.62876 -9.07303 -8.61238 -8.22580 -7.66488 -6.84807 -5.78661 -2.96274 1.55408 1.61741 3.42595 3.52788 3.56927 3.58772 3.94767 4.60188 4.65556 4.95700 5.06161 5.21412 5.29319 5.32803 5.48187 5.59620 5.61031 5.69820 5.84187 5.94761 5.98932 6.04906 6.10578 6.30724 6.44336 6.47043 6.50328 6.58288 6.68376 6.79294 6.88145 6.93062 7.01228 7.12563 7.25173 7.32609 7.70390 7.72759 7.83361 8.15935 8.36269 9.27357 9.92686 10.39263 11.26483 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012868 B = 0.007218 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.406652 B = 3878.295465 C = 5455.903203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.121 4.121 4 C 0.170 3.830 5 N -0.583 5.583 6 C -0.259 4.259 7 H 0.072 0.928 8 C 0.011 3.989 9 N -0.875 5.875 10 Si 0.871 3.129 11 H -0.291 1.291 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.191 3.809 15 C -0.078 4.078 16 C -0.104 4.104 17 C 0.054 3.946 18 F -0.149 7.149 19 C -0.132 4.132 20 C -0.189 4.189 21 C 0.126 3.874 22 O -0.298 6.298 23 C 0.027 3.973 24 H 0.037 0.963 25 H 0.052 0.948 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.018 0.982 31 H 0.025 0.975 32 H 0.070 0.930 33 H 0.251 0.749 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.137 0.863 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.096 0.904 40 H 0.049 0.951 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.458 -1.744 -12.019 12.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C -0.161 4.161 4 C 0.045 3.955 5 N -0.302 5.302 6 C -0.387 4.387 7 H 0.090 0.910 8 C -0.188 4.188 9 N -0.518 5.518 10 Si 0.700 3.300 11 H -0.218 1.218 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.063 3.937 15 C -0.083 4.083 16 C -0.124 4.124 17 C 0.035 3.965 18 F -0.128 7.128 19 C -0.151 4.151 20 C -0.208 4.208 21 C 0.080 3.920 22 O -0.211 6.211 23 C -0.068 4.068 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.037 0.963 31 H 0.043 0.957 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.155 0.845 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.115 0.885 40 H 0.068 0.932 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.183 -1.855 -11.790 12.352 hybrid contribution 1.194 -0.058 0.837 1.459 sum 4.377 -1.913 -10.953 11.949 Atomic orbital electron populations 1.21734 0.97571 0.99749 1.01125 1.21364 0.94174 0.99345 1.00124 1.22111 0.98866 0.94012 1.01098 1.20806 0.91721 0.84894 0.98042 1.44093 1.74732 1.09808 1.01610 1.19102 1.33221 1.03139 0.83229 0.91043 1.24547 0.97198 1.00349 0.96718 1.70280 1.22007 1.31620 1.27925 0.86754 0.83188 0.76898 0.83209 1.21847 1.21691 1.20731 1.19582 0.88515 0.95674 0.89935 1.20458 1.01205 0.91523 0.95076 1.20881 0.91133 1.00238 1.00098 1.17597 0.88183 0.88603 1.02159 1.91439 1.68401 1.61001 1.91987 1.20678 1.00188 0.94059 1.00172 1.20945 0.93123 1.00992 1.05702 1.18858 0.88297 0.89358 0.95442 1.86232 1.37217 1.32144 1.65510 1.22997 1.01247 0.89303 0.93294 0.94343 0.92887 0.93858 0.94428 0.92333 0.88461 0.96345 0.95722 0.91137 0.93902 0.92914 0.92454 0.84530 0.85478 0.85335 0.88522 0.93239 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.91 37.16 0.37 -2.00 16 2 C -0.11 -2.11 5.93 -26.73 -0.16 -2.27 16 3 C -0.12 -2.66 5.01 -26.73 -0.13 -2.79 16 4 C 0.17 3.97 4.86 -4.04 -0.02 3.95 16 5 N -0.58 -14.03 2.53 -174.62 -0.44 -14.47 16 6 C -0.26 -6.88 9.61 -15.06 -0.14 -7.03 16 7 H 0.07 1.89 8.02 -52.49 -0.42 1.47 16 8 C 0.01 0.28 4.64 -17.43 -0.08 0.20 16 9 N -0.87 -23.89 9.22 55.49 0.51 -23.38 16 10 Si 0.87 21.52 29.67 -169.99 -5.04 16.48 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 13 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 14 C 0.19 3.90 5.51 -5.20 -0.03 3.87 16 15 C -0.08 -1.47 5.44 -104.48 -0.57 -2.04 16 16 C -0.10 -1.86 9.65 -39.53 -0.38 -2.24 16 17 C 0.05 0.91 7.30 -39.42 -0.29 0.62 16 18 F -0.15 -2.51 17.27 2.25 0.04 -2.47 16 19 C -0.13 -1.95 10.02 -39.54 -0.40 -2.35 16 20 C -0.19 -2.77 9.04 -39.44 -0.36 -3.12 16 21 C 0.13 2.16 6.66 -39.23 -0.26 1.90 16 22 O -0.30 -4.88 7.52 -19.58 -0.15 -5.03 16 23 C 0.03 0.31 9.81 101.05 0.99 1.30 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.10 2.48 6.42 -51.93 -0.33 2.14 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.02 0.54 5.81 -51.93 -0.30 0.24 16 32 H 0.07 1.86 6.06 -51.93 -0.31 1.54 16 33 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 34 H 0.05 1.05 7.96 -51.93 -0.41 0.64 16 35 H 0.06 1.13 7.69 -51.93 -0.40 0.73 16 36 H 0.14 2.35 8.05 -52.49 -0.42 1.93 16 37 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 38 H 0.13 1.49 6.30 -52.49 -0.33 1.16 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.46 7.67 -51.93 -0.40 0.07 16 41 H 0.05 0.56 7.65 -51.93 -0.40 0.16 16 LS Contribution 335.90 15.07 5.06 5.06 Total: -1.00 -28.51 335.90 -7.73 -36.24 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.25 Total: -0.44 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -1.46 Total: -11.99 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.07 Total: -37.85 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.15 Total: -5.03 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.04 Total: 16.48 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.51 -7.73 -36.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138374915.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.184 kcal (2) G-P(sol) polarization free energy of solvation -28.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds