Wall clock time and date at job start Tue Mar 31 2020 05:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47101 * 2 1 4 4 N 1.46901 * 109.46938 * 179.83521 * 3 2 1 5 5 C 1.46902 * 111.00109 * 289.45052 * 4 3 2 6 6 C 1.50697 * 109.47040 * 160.33025 * 5 4 3 7 7 H 1.08009 * 120.00109 * 4.63973 * 6 5 4 8 8 C 1.37875 * 120.00101 * 184.63512 * 6 5 4 9 9 N 1.31512 * 119.99985 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00103 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47168 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47570 * 120.00204 * 10 8 6 13 13 H 1.48497 * 109.47195 * 240.00126 * 10 8 6 14 14 C 1.46899 * 110.99496 * 165.50030 * 4 3 2 15 15 C 1.50702 * 109.47369 * 293.94994 * 14 4 3 16 16 C 1.38384 * 120.04495 * 269.98534 * 15 14 4 17 17 F 1.35099 * 119.99249 * 0.03713 * 16 15 14 18 18 C 1.38471 * 120.00840 * 180.02562 * 16 15 14 19 19 C 1.38251 * 120.08332 * 359.97438 * 18 16 15 20 20 C 1.38133 * 120.08081 * 0.04369 * 19 18 16 21 21 C 1.38670 * 120.03549 * 90.00258 * 15 14 4 22 22 O 1.35901 * 120.04667 * 359.70111 * 21 15 14 23 23 C 1.42892 * 117.00203 * 179.97438 * 22 21 15 24 24 H 1.09000 * 109.47166 * 60.00237 * 1 2 3 25 25 H 1.09001 * 109.47087 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47254 * 299.99865 * 1 2 3 27 27 H 1.09002 * 109.47254 * 240.00135 * 2 1 3 28 28 H 1.09000 * 109.47166 * 119.99763 * 2 1 3 29 29 H 1.09001 * 109.47103 * 59.83557 * 3 2 1 30 30 H 1.09003 * 109.46973 * 299.83748 * 3 2 1 31 31 H 1.09003 * 109.47154 * 280.33156 * 5 4 3 32 32 H 1.09001 * 109.46755 * 40.33246 * 5 4 3 33 33 H 0.97001 * 120.00146 * 180.02562 * 9 8 6 34 34 H 1.09006 * 109.47251 * 173.95652 * 14 4 3 35 35 H 1.09000 * 109.48022 * 53.95324 * 14 4 3 36 36 H 1.08000 * 119.95808 * 179.97438 * 18 16 15 37 37 H 1.08006 * 119.95945 * 180.02562 * 19 18 16 38 38 H 1.07998 * 120.00200 * 180.02562 * 20 19 18 39 39 H 1.09008 * 109.46927 * 60.00557 * 23 22 21 40 40 H 1.09003 * 109.47278 * 180.02562 * 23 22 21 41 41 H 1.08994 * 109.47456 * 300.00669 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0040 5 6 4.0319 0.9870 1.2990 6 6 5.4614 0.5394 1.1341 7 1 5.9580 0.6579 0.1823 8 6 6.1353 -0.0213 2.1983 9 7 5.5305 -0.1660 3.3570 10 14 7.9074 -0.5755 1.9941 11 1 8.3539 -0.3042 0.6040 12 1 8.7716 0.1686 2.9451 13 1 8.0059 -2.0312 2.2708 14 6 4.0362 2.7699 -0.3392 15 6 3.6817 3.0976 -1.7668 16 6 4.5418 2.7467 -2.7925 17 9 5.7000 2.1092 -2.5142 18 6 4.2155 3.0487 -4.1039 19 6 3.0304 3.7003 -4.3907 20 6 2.1694 4.0526 -3.3696 21 6 2.4931 3.7516 -2.0542 22 8 1.6438 4.0923 -1.0495 23 6 0.4382 4.7645 -1.4191 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6742 1.9572 0.8885 30 1 1.6790 1.9555 -0.8915 31 1 3.9881 1.8061 2.0169 32 1 3.4297 0.1538 1.6612 33 1 6.0047 -0.5601 4.1058 34 1 5.1203 2.7710 -0.2248 35 1 3.6002 3.5169 0.3240 36 1 4.8876 2.7748 -4.9036 37 1 2.7777 3.9345 -5.4143 38 1 1.2438 4.5612 -3.5952 39 1 -0.1411 4.1293 -2.0894 40 1 -0.1472 4.9787 -0.5249 41 1 0.6832 5.6983 -1.9249 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138384587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:14 Heat of formation + Delta-G solvation = -58.507746 kcal Electronic energy + Delta-G solvation = -22968.632880 eV Core-core repulsion = 19570.394190 eV Total energy + Delta-G solvation = -3398.238690 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.46362 -40.22444 -37.26664 -36.75428 -33.08084 -32.57725 -30.87616 -29.73942 -27.49243 -27.09647 -26.06384 -23.75904 -22.20916 -21.80717 -21.05693 -19.53470 -18.19283 -16.84170 -16.44002 -15.90830 -15.74250 -15.69592 -15.04661 -14.75020 -14.49917 -14.31471 -14.10270 -13.66841 -13.42292 -12.85680 -12.47623 -12.36763 -12.26893 -12.16622 -11.76683 -11.66340 -11.33048 -11.25946 -11.02120 -10.91306 -10.76523 -10.49658 -10.42120 -10.28740 -10.01747 -9.52573 -9.11335 -8.49857 -8.31708 -8.16613 -7.11250 -5.92540 -3.92401 1.29265 1.39684 3.20152 3.38068 3.45210 3.52377 3.68406 4.52679 4.57991 4.76108 4.92602 5.03250 5.06697 5.08311 5.13984 5.37277 5.42410 5.43923 5.50896 5.57352 5.67277 5.92732 5.98389 6.02647 6.10205 6.25007 6.29366 6.36480 6.37505 6.48111 6.54925 6.61639 6.81719 6.91079 6.95388 7.35375 7.37519 7.45579 7.95175 8.23081 8.31897 8.67031 9.16726 9.71335 11.18170 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015706 B = 0.006155 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.341532 B = 4548.206115 C = 5637.576832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C 0.059 3.941 4 N -0.529 5.529 5 C 0.191 3.809 6 C -0.499 4.499 7 H 0.065 0.935 8 C 0.054 3.946 9 N -0.902 5.902 10 Si 0.894 3.106 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.108 3.892 15 C -0.132 4.132 16 C 0.158 3.842 17 F -0.121 7.121 18 C -0.197 4.197 19 C -0.062 4.062 20 C -0.226 4.226 21 C 0.156 3.844 22 O -0.304 6.304 23 C 0.027 3.973 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.020 0.980 30 H 0.063 0.937 31 H -0.012 1.012 32 H 0.038 0.962 33 H 0.259 0.741 34 H 0.091 0.909 35 H 0.038 0.962 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.055 0.945 40 H 0.099 0.901 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.452 9.410 -13.424 19.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.159 4.159 3 C -0.069 4.069 4 N -0.253 5.253 5 C 0.066 3.934 6 C -0.538 4.538 7 H 0.083 0.917 8 C -0.147 4.147 9 N -0.542 5.542 10 Si 0.722 3.278 11 H -0.196 1.196 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.020 4.020 15 C -0.134 4.134 16 C 0.138 3.862 17 F -0.099 7.099 18 C -0.216 4.216 19 C -0.080 4.080 20 C -0.245 4.245 21 C 0.110 3.890 22 O -0.217 6.217 23 C -0.068 4.068 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.081 0.919 31 H 0.006 0.994 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.056 0.944 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.193 8.954 -13.355 19.037 hybrid contribution 0.675 0.200 0.469 0.846 sum -9.518 9.153 -12.886 18.450 Atomic orbital electron populations 1.21714 0.96878 1.00824 1.00866 1.21533 0.93854 0.97606 1.02918 1.22098 0.89557 0.95753 0.99504 1.62189 1.05194 1.22464 1.35458 1.19800 0.95745 0.94818 0.83009 1.21265 0.96615 1.38840 0.97062 0.91702 1.24971 0.98294 0.96184 0.95235 1.69971 1.36902 1.45623 1.01708 0.86494 0.84909 0.78196 0.78195 1.19556 1.21236 1.21130 1.20695 1.01596 0.91158 0.88529 1.19424 0.93482 1.02807 0.97719 1.17196 0.82913 0.93639 0.92433 1.91564 1.45247 1.78688 1.94448 1.21010 0.99894 1.05703 0.94979 1.20622 0.92659 0.95950 0.98774 1.21159 1.02660 1.08780 0.91872 1.18484 0.89616 0.94059 0.86829 1.86211 1.30622 1.72593 1.32247 1.23053 0.85099 0.96072 1.02598 0.93576 0.93192 0.93246 0.91913 0.91330 0.96142 0.91879 0.99429 0.94400 0.93156 0.89097 0.94387 0.84951 0.85276 0.85330 0.92666 0.88285 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.91 37.15 0.37 -1.72 16 2 C -0.12 -2.23 5.98 -26.73 -0.16 -2.39 16 3 C 0.06 1.16 4.22 -3.82 -0.02 1.15 16 4 N -0.53 -12.07 4.38 -237.51 -1.04 -13.12 16 5 C 0.19 5.14 4.60 -4.98 -0.02 5.12 16 6 C -0.50 -14.51 8.61 -34.44 -0.30 -14.80 16 7 H 0.06 1.91 7.66 -52.48 -0.40 1.50 16 8 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 10 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 C 0.11 2.27 4.59 -4.98 -0.02 2.25 16 15 C -0.13 -2.35 4.94 -104.41 -0.52 -2.87 16 16 C 0.16 2.71 7.24 -39.44 -0.29 2.43 16 17 F -0.12 -2.37 16.48 2.25 0.04 -2.33 16 18 C -0.20 -2.64 10.02 -39.49 -0.40 -3.04 16 19 C -0.06 -0.70 10.04 -39.62 -0.40 -1.09 16 20 C -0.23 -2.69 9.04 -39.42 -0.36 -3.04 16 21 C 0.16 2.34 5.42 -39.22 -0.21 2.12 16 22 O -0.30 -4.33 7.69 -19.43 -0.15 -4.48 16 23 C 0.03 0.25 9.81 101.05 0.99 1.24 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.07 1.41 6.46 -51.93 -0.34 1.08 16 29 H 0.02 0.41 8.07 -51.93 -0.42 -0.01 16 30 H 0.06 1.15 4.62 -51.93 -0.24 0.91 16 31 H -0.01 -0.35 8.00 -51.93 -0.42 -0.76 16 32 H 0.04 1.08 6.15 -51.93 -0.32 0.76 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.09 2.08 6.82 -51.93 -0.35 1.72 16 35 H 0.04 0.79 7.52 -51.93 -0.39 0.40 16 36 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.13 1.15 6.30 -52.49 -0.33 0.82 16 39 H 0.05 0.44 7.65 -51.92 -0.40 0.04 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 LS Contribution 334.64 15.07 5.04 5.04 Total: -1.00 -32.12 334.64 -7.91 -40.03 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -6.10 Total: -2.66 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -1.42 Total: -13.20 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: -0.30 Total: -39.80 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.15 Total: -4.48 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.33 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.12 -7.91 -40.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138384587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.475 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds