Wall clock time and date at job start Tue Mar 31 2020 05:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47101 * 2 1 4 4 N 1.46901 * 109.46938 * 179.83521 * 3 2 1 5 5 C 1.46902 * 111.00109 * 289.45052 * 4 3 2 6 6 C 1.50697 * 109.47040 * 160.33025 * 5 4 3 7 7 H 1.08009 * 120.00109 * 4.63973 * 6 5 4 8 8 C 1.37875 * 120.00101 * 184.63512 * 6 5 4 9 9 N 1.31512 * 119.99985 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00103 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47168 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47570 * 120.00204 * 10 8 6 13 13 H 1.48497 * 109.47195 * 240.00126 * 10 8 6 14 14 C 1.46899 * 110.99496 * 165.50030 * 4 3 2 15 15 C 1.50702 * 109.47369 * 293.94994 * 14 4 3 16 16 C 1.38384 * 120.04495 * 269.98534 * 15 14 4 17 17 F 1.35099 * 119.99249 * 0.03713 * 16 15 14 18 18 C 1.38471 * 120.00840 * 180.02562 * 16 15 14 19 19 C 1.38251 * 120.08332 * 359.97438 * 18 16 15 20 20 C 1.38133 * 120.08081 * 0.04369 * 19 18 16 21 21 C 1.38670 * 120.03549 * 90.00258 * 15 14 4 22 22 O 1.35901 * 120.04667 * 359.70111 * 21 15 14 23 23 C 1.42892 * 117.00203 * 179.97438 * 22 21 15 24 24 H 1.09000 * 109.47166 * 60.00237 * 1 2 3 25 25 H 1.09001 * 109.47087 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47254 * 299.99865 * 1 2 3 27 27 H 1.09002 * 109.47254 * 240.00135 * 2 1 3 28 28 H 1.09000 * 109.47166 * 119.99763 * 2 1 3 29 29 H 1.09001 * 109.47103 * 59.83557 * 3 2 1 30 30 H 1.09003 * 109.46973 * 299.83748 * 3 2 1 31 31 H 1.09003 * 109.47154 * 280.33156 * 5 4 3 32 32 H 1.09001 * 109.46755 * 40.33246 * 5 4 3 33 33 H 0.97001 * 120.00146 * 180.02562 * 9 8 6 34 34 H 1.09006 * 109.47251 * 173.95652 * 14 4 3 35 35 H 1.09000 * 109.48022 * 53.95324 * 14 4 3 36 36 H 1.08000 * 119.95808 * 179.97438 * 18 16 15 37 37 H 1.08006 * 119.95945 * 180.02562 * 19 18 16 38 38 H 1.07998 * 120.00200 * 180.02562 * 20 19 18 39 39 H 1.09008 * 109.46927 * 60.00557 * 23 22 21 40 40 H 1.09003 * 109.47278 * 180.02562 * 23 22 21 41 41 H 1.08994 * 109.47456 * 300.00669 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0040 5 6 4.0319 0.9870 1.2990 6 6 5.4614 0.5394 1.1341 7 1 5.9580 0.6579 0.1823 8 6 6.1353 -0.0213 2.1983 9 7 5.5305 -0.1660 3.3570 10 14 7.9074 -0.5755 1.9941 11 1 8.3539 -0.3042 0.6040 12 1 8.7716 0.1686 2.9451 13 1 8.0059 -2.0312 2.2708 14 6 4.0362 2.7699 -0.3392 15 6 3.6817 3.0976 -1.7668 16 6 4.5418 2.7467 -2.7925 17 9 5.7000 2.1092 -2.5142 18 6 4.2155 3.0487 -4.1039 19 6 3.0304 3.7003 -4.3907 20 6 2.1694 4.0526 -3.3696 21 6 2.4931 3.7516 -2.0542 22 8 1.6438 4.0923 -1.0495 23 6 0.4382 4.7645 -1.4191 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6742 1.9572 0.8885 30 1 1.6790 1.9555 -0.8915 31 1 3.9881 1.8061 2.0169 32 1 3.4297 0.1538 1.6612 33 1 6.0047 -0.5601 4.1058 34 1 5.1203 2.7710 -0.2248 35 1 3.6002 3.5169 0.3240 36 1 4.8876 2.7748 -4.9036 37 1 2.7777 3.9345 -5.4143 38 1 1.2438 4.5612 -3.5952 39 1 -0.1411 4.1293 -2.0894 40 1 -0.1472 4.9787 -0.5249 41 1 0.6832 5.6983 -1.9249 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138384587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:13 Heat of formation + Delta-G solvation = -78.854403 kcal Electronic energy + Delta-G solvation = -22969.515177 eV Core-core repulsion = 19570.394190 eV Total energy + Delta-G solvation = -3399.120987 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.82838 -41.31343 -38.69918 -38.05707 -34.95849 -34.28822 -32.33794 -30.77785 -29.15622 -28.32942 -27.40231 -25.57416 -23.64929 -23.11992 -22.39142 -21.24198 -19.25142 -18.64859 -17.94219 -17.22710 -16.98321 -16.85499 -16.57711 -16.29803 -15.91903 -15.69090 -15.49579 -15.39221 -14.94587 -14.18068 -13.89677 -13.78521 -13.58897 -13.37352 -13.20922 -13.09903 -12.86744 -12.68073 -12.61354 -12.49067 -12.28476 -12.06156 -11.95329 -11.76267 -11.69480 -11.32018 -11.22241 -10.60273 -9.69635 -9.24094 -8.98805 -8.20419 -6.29712 0.17923 0.33440 1.37074 1.37586 1.52673 2.27062 2.39375 2.59865 3.10083 3.39779 3.50509 3.74419 3.87748 4.03901 4.10264 4.18897 4.30448 4.43775 4.45016 4.46340 4.54143 4.56794 4.70002 4.77255 4.78909 4.82362 4.97424 5.05506 5.10838 5.13380 5.22046 5.25930 5.33071 5.35968 5.37492 5.44527 5.67226 5.81793 6.08438 6.35432 6.43435 6.64798 6.85556 7.39146 8.90400 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015706 B = 0.006155 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.341532 B = 4548.206115 C = 5637.576832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.119 4.119 3 C 0.066 3.934 4 N -0.537 5.537 5 C 0.209 3.791 6 C -0.517 4.517 7 H 0.054 0.946 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.965 3.035 11 H -0.269 1.269 12 H -0.275 1.275 13 H -0.274 1.274 14 C 0.119 3.881 15 C -0.167 4.167 16 C 0.124 3.876 17 F -0.149 7.149 18 C -0.194 4.194 19 C -0.042 4.042 20 C -0.211 4.211 21 C 0.152 3.848 22 O -0.333 6.333 23 C 0.016 3.984 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.009 0.991 30 H 0.085 0.915 31 H -0.045 1.045 32 H 0.016 0.984 33 H 0.264 0.736 34 H 0.056 0.944 35 H 0.028 0.972 36 H 0.154 0.846 37 H 0.178 0.822 38 H 0.169 0.831 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.095 10.325 -16.451 22.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.157 4.157 3 C -0.062 4.062 4 N -0.261 5.261 5 C 0.083 3.917 6 C -0.556 4.556 7 H 0.072 0.928 8 C -0.195 4.195 9 N -0.575 5.575 10 Si 0.790 3.210 11 H -0.193 1.193 12 H -0.201 1.201 13 H -0.199 1.199 14 C -0.009 4.009 15 C -0.169 4.169 16 C 0.105 3.895 17 F -0.127 7.127 18 C -0.213 4.213 19 C -0.060 4.060 20 C -0.230 4.230 21 C 0.106 3.894 22 O -0.246 6.246 23 C -0.078 4.078 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.028 0.972 30 H 0.103 0.897 31 H -0.027 1.027 32 H 0.034 0.966 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.172 0.828 37 H 0.195 0.805 38 H 0.187 0.813 39 H 0.092 0.908 40 H 0.128 0.872 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.859 9.882 -16.394 22.517 hybrid contribution 1.072 0.018 1.359 1.731 sum -10.787 9.900 -15.035 20.986 Atomic orbital electron populations 1.21634 0.93157 1.02323 1.02107 1.21515 0.97082 0.96161 1.00963 1.22146 0.87376 0.96783 0.99905 1.62149 1.07366 1.24034 1.32511 1.19415 0.94999 0.92857 0.84429 1.21466 0.97768 1.39464 0.96885 0.92776 1.25863 1.02959 0.95946 0.94715 1.70085 1.38841 1.46063 1.02491 0.85391 0.79178 0.78152 0.78281 1.19343 1.20085 1.19927 1.20423 0.99231 0.89770 0.91491 1.19209 0.96028 1.06233 0.95417 1.17669 0.82504 0.95201 0.94167 1.91485 1.46833 1.79608 1.94819 1.21327 1.01205 1.05243 0.93489 1.21208 0.90779 0.93129 1.00913 1.21611 1.03910 1.07288 0.90169 1.18569 0.88735 0.93697 0.88412 1.86177 1.32156 1.73118 1.33172 1.23415 0.83448 0.96924 1.04022 0.91377 0.91620 0.92884 0.92505 0.94604 0.97225 0.89657 1.02717 0.96579 0.92668 0.92580 0.95433 0.82825 0.80479 0.81345 0.90777 0.87182 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 9.91 71.98 0.71 -2.96 16 2 C -0.12 -4.49 5.98 30.59 0.18 -4.31 16 3 C 0.07 2.66 4.22 86.30 0.36 3.03 16 4 N -0.54 -26.16 4.38 -905.34 -3.97 -30.13 16 5 C 0.21 12.14 4.60 85.56 0.39 12.53 16 6 C -0.52 -31.88 8.61 25.60 0.22 -31.66 16 7 H 0.05 3.38 7.66 -2.91 -0.02 3.36 16 8 C 0.00 0.17 5.46 84.65 0.46 0.63 16 9 N -0.93 -58.86 13.29 21.45 0.28 -58.57 16 10 Si 0.97 47.34 29.54 68.60 2.03 49.37 16 11 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 14 C 0.12 5.37 4.59 85.56 0.39 5.76 16 15 C -0.17 -6.08 4.94 -19.73 -0.10 -6.18 16 16 C 0.12 4.33 7.24 22.36 0.16 4.49 16 17 F -0.15 -6.17 16.48 44.97 0.74 -5.43 16 18 C -0.19 -4.74 10.02 22.33 0.22 -4.51 16 19 C -0.04 -0.75 10.04 22.25 0.22 -0.53 16 20 C -0.21 -4.08 9.04 22.37 0.20 -3.87 16 21 C 0.15 4.30 5.42 22.50 0.12 4.43 16 22 O -0.33 -9.03 7.69 -92.43 -0.71 -9.74 16 23 C 0.02 0.23 9.81 113.37 1.11 1.35 16 24 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 25 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.04 1.56 6.46 -2.39 -0.02 1.54 16 29 H 0.01 0.40 8.07 -2.39 -0.02 0.38 16 30 H 0.09 3.09 4.62 -2.39 -0.01 3.07 16 31 H -0.04 -2.82 8.00 -2.39 -0.02 -2.84 16 32 H 0.02 1.00 6.15 -2.39 -0.01 0.98 16 33 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 34 H 0.06 2.84 6.82 -2.38 -0.02 2.82 16 35 H 0.03 1.26 7.52 -2.39 -0.02 1.24 16 36 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 37 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.17 1.91 6.30 -2.91 -0.02 1.89 16 39 H 0.07 0.83 7.65 -2.38 -0.02 0.81 16 40 H 0.11 1.37 8.14 -2.39 -0.02 1.36 16 41 H 0.07 0.81 7.67 -2.39 -0.02 0.79 16 Total: -1.00 -75.78 334.64 4.07 -71.71 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: 1.02 Total: 4.61 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 4.68 Total: -21.81 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -3.68 Total: -88.70 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.71 Total: -9.74 kcal Atomic # 9 Polarization: -6.17 SS G_CDS: 0.74 Total: -5.43 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -75.78 4.07 -71.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138384587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.142 kcal (2) G-P(sol) polarization free energy of solvation -75.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds