Wall clock time and date at job start Tue Mar 31 2020 05:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46998 * 2 1 4 4 C 1.53003 * 109.46998 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47176 * 180.02562 * 4 3 2 6 6 C 1.36933 * 119.99966 * 269.99888 * 5 4 3 7 7 H 1.08002 * 120.00398 * 322.21980 * 6 5 4 8 8 C 1.38811 * 120.00097 * 142.22061 * 6 5 4 9 9 N 1.31622 * 120.00049 * 339.03394 * 8 6 5 10 10 Si 1.86803 * 120.00216 * 159.03188 * 8 6 5 11 11 H 1.48503 * 109.47013 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47331 * 120.00175 * 10 8 6 13 13 H 1.48503 * 109.47197 * 239.99990 * 10 8 6 14 14 C 1.46507 * 120.00336 * 90.00140 * 5 4 3 15 15 C 1.50699 * 109.47091 * 84.35358 * 14 5 4 16 16 C 1.38382 * 120.04511 * 269.27700 * 15 14 5 17 17 F 1.35098 * 119.99608 * 0.04225 * 16 15 14 18 18 C 1.38469 * 120.00729 * 180.02562 * 16 15 14 19 19 C 1.38256 * 120.08574 * 359.97292 * 18 16 15 20 20 C 1.38135 * 120.07894 * 0.04843 * 19 18 16 21 21 C 1.38671 * 120.03402 * 89.29712 * 15 14 5 22 22 O 1.35899 * 120.04450 * 359.69831 * 21 15 14 23 23 C 1.42902 * 116.99713 * 179.97438 * 22 21 15 24 24 H 1.08995 * 109.47604 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46738 * 299.99811 * 1 2 3 26 26 H 1.09005 * 109.47017 * 59.99594 * 1 2 3 27 27 H 1.09000 * 109.47171 * 240.00485 * 2 1 3 28 28 H 1.08992 * 109.47034 * 120.00702 * 2 1 3 29 29 H 1.09000 * 109.46763 * 60.00236 * 3 2 1 30 30 H 1.08996 * 109.47473 * 299.99859 * 3 2 1 31 31 H 1.08998 * 109.46738 * 60.00189 * 4 3 2 32 32 H 1.09005 * 109.47017 * 300.00406 * 4 3 2 33 33 H 0.97007 * 120.00214 * 185.01895 * 9 8 6 34 34 H 1.09003 * 109.46330 * 324.36143 * 14 5 4 35 35 H 1.08998 * 109.47283 * 204.36198 * 14 5 4 36 36 H 1.08003 * 119.96183 * 179.97438 * 18 16 15 37 37 H 1.07995 * 119.96132 * 180.02562 * 19 18 16 38 38 H 1.08003 * 120.00459 * 180.02562 * 20 19 18 39 39 H 1.09001 * 109.46829 * 180.02562 * 23 22 21 40 40 H 1.08998 * 109.47240 * 300.00132 * 23 22 21 41 41 H 1.08995 * 109.47176 * 60.00742 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2861 3.4699 -1.1856 7 1 4.7026 2.9304 -2.0234 8 6 3.9817 4.8184 -1.3107 9 7 3.1221 5.3783 -0.4861 10 14 4.7921 5.8386 -2.6494 11 1 5.7125 4.9800 -3.4373 12 1 3.7484 6.3988 -3.5451 13 1 5.5600 6.9483 -2.0296 14 6 4.3031 3.5136 1.2690 15 6 5.6798 3.1647 1.7731 16 6 5.8556 2.0787 2.6127 17 9 4.7927 1.3301 2.9802 18 6 7.1208 1.7591 3.0758 19 6 8.2099 2.5235 2.7001 20 6 8.0384 3.6085 1.8626 21 6 6.7719 3.9317 1.3965 22 8 6.6030 4.9953 0.5675 23 6 7.7722 5.7406 0.2220 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.9329 0.9288 -0.8909 32 1 3.9337 0.9285 0.8891 33 1 2.8540 6.3012 -0.6180 34 1 3.5583 3.2021 2.0014 35 1 4.2342 4.5906 1.1163 36 1 7.2571 0.9117 3.7313 37 1 9.1958 2.2721 3.0622 38 1 8.8901 4.2045 1.5696 39 1 7.4977 6.5599 -0.4424 40 1 8.2267 6.1439 1.1270 41 1 8.4841 5.0869 -0.2818 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138385535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:46 Heat of formation + Delta-G solvation = -48.116833 kcal Electronic energy + Delta-G solvation = -23226.752145 eV Core-core repulsion = 19828.964039 eV Total energy + Delta-G solvation = -3397.788106 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.32539 -39.55194 -36.72493 -36.06237 -33.93877 -31.56770 -30.63859 -29.32730 -27.74145 -26.91730 -25.47959 -23.73109 -21.81636 -21.54076 -20.59940 -19.71051 -17.83789 -16.67954 -16.35497 -15.44206 -15.37792 -15.14406 -14.85677 -14.67455 -14.55866 -14.07210 -13.61708 -13.39551 -13.25678 -12.87022 -12.36532 -12.07639 -11.92057 -11.83782 -11.77312 -11.40385 -11.15512 -10.93613 -10.76078 -10.55074 -10.49135 -10.39035 -10.23351 -10.14298 -9.86052 -9.78941 -9.50981 -8.38644 -8.14308 -7.65875 -6.46150 -5.73673 -3.22214 1.66297 1.83732 3.35643 3.44372 3.48406 3.79729 4.10453 4.56426 4.89166 5.16411 5.34666 5.40476 5.42108 5.47066 5.52874 5.54866 5.56346 5.76232 5.84472 5.85948 5.90502 6.02055 6.18470 6.30563 6.40932 6.45220 6.50822 6.54209 6.58832 6.70332 6.72987 6.79853 6.86734 7.10431 7.21301 7.30579 7.41343 7.73305 7.91942 7.99447 8.62731 9.26929 9.90937 10.49692 11.32061 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011690 B = 0.009173 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.607748 B = 3051.868192 C = 5082.992470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.130 4.130 4 C 0.145 3.855 5 N -0.571 5.571 6 C -0.252 4.252 7 H 0.055 0.945 8 C 0.031 3.969 9 N -0.885 5.885 10 Si 0.891 3.109 11 H -0.278 1.278 12 H -0.294 1.294 13 H -0.287 1.287 14 C 0.189 3.811 15 C -0.144 4.144 16 C 0.126 3.874 17 F -0.138 7.138 18 C -0.201 4.201 19 C -0.075 4.075 20 C -0.230 4.230 21 C 0.171 3.829 22 O -0.274 6.274 23 C 0.026 3.974 24 H 0.043 0.957 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.254 0.746 34 H 0.033 0.967 35 H 0.112 0.888 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.785 -4.183 5.139 9.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.170 4.170 4 C 0.019 3.981 5 N -0.290 5.290 6 C -0.382 4.382 7 H 0.073 0.927 8 C -0.169 4.169 9 N -0.527 5.527 10 Si 0.721 3.279 11 H -0.203 1.203 12 H -0.221 1.221 13 H -0.213 1.213 14 C 0.063 3.937 15 C -0.148 4.148 16 C 0.106 3.894 17 F -0.116 7.116 18 C -0.220 4.220 19 C -0.094 4.094 20 C -0.249 4.249 21 C 0.124 3.876 22 O -0.186 6.186 23 C -0.070 4.070 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.130 0.870 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.112 0.888 40 H 0.067 0.933 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.517 -3.935 5.061 9.142 hybrid contribution 0.591 0.476 -0.631 0.987 sum 7.107 -3.459 4.430 9.061 Atomic orbital electron populations 1.21754 0.96863 1.00279 1.01632 1.21529 0.95011 0.98765 1.00808 1.22113 0.99073 0.93802 1.02052 1.20977 0.91531 0.87295 0.98260 1.43722 1.73366 1.10183 1.01680 1.18948 1.36003 0.92365 0.90879 0.92743 1.25017 0.96312 0.98454 0.97158 1.69907 1.31038 1.13384 1.38412 0.86433 0.79403 0.80543 0.81495 1.20322 1.22121 1.21333 1.19762 0.85574 1.01932 0.86464 1.20650 1.00657 0.94983 0.98542 1.17242 0.83273 0.91214 0.97664 1.91440 1.55472 1.74764 1.89929 1.20847 0.91572 1.03468 1.06141 1.20475 0.97767 0.94263 0.96853 1.21201 0.96249 1.02153 1.05312 1.18547 0.92116 0.87474 0.89504 1.86424 1.32602 1.38738 1.60792 1.23020 0.88225 0.95816 0.99952 0.93811 0.93116 0.92995 0.92842 0.92956 0.93052 0.91914 0.94379 0.94531 0.93625 0.94879 0.87030 0.85810 0.85942 0.85831 0.88823 0.93339 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.12 -2.04 5.93 -26.73 -0.16 -2.20 16 3 C -0.13 -2.70 5.54 -26.73 -0.15 -2.85 16 4 C 0.15 3.24 5.69 -4.04 -0.02 3.22 16 5 N -0.57 -14.42 2.41 -174.61 -0.42 -14.84 16 6 C -0.25 -6.87 9.46 -15.06 -0.14 -7.02 16 7 H 0.05 1.52 7.91 -52.49 -0.42 1.11 16 8 C 0.03 0.85 4.90 -17.43 -0.09 0.76 16 9 N -0.89 -25.10 11.54 55.49 0.64 -24.46 16 10 Si 0.89 21.48 29.61 -169.99 -5.03 16.45 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.19 4.61 4.95 -5.19 -0.03 4.59 16 15 C -0.14 -3.08 5.47 -104.41 -0.57 -3.65 16 16 C 0.13 2.44 7.12 -39.44 -0.28 2.15 16 17 F -0.14 -2.68 14.97 2.25 0.03 -2.65 16 18 C -0.20 -3.23 10.02 -39.49 -0.40 -3.62 16 19 C -0.07 -1.10 10.04 -39.61 -0.40 -1.50 16 20 C -0.23 -3.72 9.04 -39.42 -0.36 -4.08 16 21 C 0.17 3.42 6.66 -39.22 -0.26 3.16 16 22 O -0.27 -5.75 9.56 -19.42 -0.19 -5.94 16 23 C 0.03 0.40 9.81 101.05 0.99 1.39 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.04 0.84 8.04 -51.93 -0.42 0.43 16 32 H 0.04 0.78 6.40 -51.93 -0.33 0.45 16 33 H 0.25 6.97 8.32 -40.82 -0.34 6.63 16 34 H 0.03 0.81 7.59 -51.93 -0.39 0.41 16 35 H 0.11 3.04 5.02 -51.93 -0.26 2.78 16 36 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 37 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.12 1.66 6.30 -52.48 -0.33 1.33 16 39 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.05 0.62 7.67 -51.93 -0.40 0.22 16 41 H 0.05 0.71 7.65 -51.93 -0.40 0.31 16 LS Contribution 340.10 15.07 5.13 5.13 Total: -1.00 -29.26 340.10 -7.64 -36.89 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.31 Total: 0.88 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -1.49 Total: -11.46 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.22 Total: -39.30 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: -0.19 Total: -5.94 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.03 Total: -2.65 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.26 -7.64 -36.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138385535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.224 kcal (2) G-P(sol) polarization free energy of solvation -29.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds