Wall clock time and date at job start Tue Mar 31 2020 05:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47125 * 2 1 4 4 C 1.50697 * 109.47332 * 180.02562 * 3 2 1 5 5 C 1.33390 * 125.20412 * 89.71420 * 4 3 2 6 6 C 1.38421 * 114.91889 * 179.86454 * 5 4 3 7 7 C 1.33389 * 114.92287 * 0.42932 * 6 5 4 8 8 C 1.50700 * 125.20564 * 179.79866 * 7 6 5 9 9 N 1.46900 * 109.47524 * 89.99556 * 8 7 6 10 10 C 1.46893 * 111.00016 * 170.00252 * 9 8 7 11 11 C 1.50704 * 109.47437 * 284.31331 * 10 9 8 12 12 H 1.08000 * 119.99343 * 4.65293 * 11 10 9 13 13 C 1.37875 * 120.00610 * 184.66067 * 11 10 9 14 14 N 1.31515 * 119.99350 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00283 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46756 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.46977 * 119.99675 * 15 13 11 18 18 H 1.48493 * 109.46978 * 239.99764 * 15 13 11 19 19 C 1.46900 * 111.00093 * 293.95567 * 9 8 7 20 20 C 1.52997 * 109.47434 * 164.11095 * 19 9 8 21 21 C 1.52997 * 109.47605 * 179.57165 * 20 19 9 22 22 S 1.75879 * 109.59270 * 359.77177 * 7 6 5 23 23 H 1.08996 * 109.46714 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46814 * 60.00165 * 1 2 3 25 25 H 1.09003 * 109.46915 * 300.00541 * 1 2 3 26 26 H 1.08997 * 109.46949 * 119.99378 * 2 1 3 27 27 H 1.08993 * 109.47401 * 239.99737 * 2 1 3 28 28 H 1.09002 * 109.47042 * 300.00183 * 3 2 1 29 29 H 1.08993 * 109.47196 * 59.99611 * 3 2 1 30 30 H 1.07997 * 122.53698 * 0.02562 * 5 4 3 31 31 H 1.07999 * 122.53682 * 180.20070 * 6 5 4 32 32 H 1.08994 * 109.47409 * 210.00125 * 8 7 6 33 33 H 1.09004 * 109.46945 * 329.99650 * 8 7 6 34 34 H 1.09007 * 109.47736 * 44.31055 * 10 9 8 35 35 H 1.08996 * 109.47620 * 164.31261 * 10 9 8 36 36 H 0.97010 * 119.99794 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.47233 * 284.11647 * 19 9 8 38 38 H 1.09002 * 109.47027 * 44.11198 * 19 9 8 39 39 H 1.09006 * 109.47214 * 299.57829 * 20 19 9 40 40 H 1.09004 * 109.46562 * 59.56969 * 20 19 9 41 41 H 1.09006 * 109.46980 * 59.99862 * 21 20 19 42 42 H 1.08999 * 109.47150 * 180.02562 * 21 20 19 43 43 H 1.08996 * 109.46914 * 300.00291 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.3156 1.4373 -1.0909 6 6 5.6776 1.4416 -0.8443 7 6 6.0153 1.4412 0.4461 8 6 7.4264 1.4409 0.9749 9 7 7.8852 2.8257 1.1471 10 6 9.1583 2.8715 1.8784 11 6 8.9064 2.6161 3.3422 12 1 7.9132 2.3636 3.6830 13 6 9.9436 2.7051 4.2461 14 7 11.1531 3.0123 3.8309 15 14 9.6311 2.3892 6.0605 16 1 8.1966 2.0652 6.2665 17 1 10.4669 1.2493 6.5156 18 1 9.9811 3.6027 6.8416 19 6 7.9979 3.5080 -0.1490 20 6 8.0854 5.0188 0.0758 21 6 8.2134 5.7287 -1.2734 22 16 4.5616 1.4418 1.4361 23 1 -0.3632 -1.0276 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.9060 1.4329 -2.0902 31 1 6.4114 1.4413 -1.6368 32 1 7.4544 0.9268 1.9356 33 1 8.0789 0.9271 0.2689 34 1 9.8301 2.1075 1.4868 35 1 9.6137 3.8539 1.7542 36 1 11.8830 3.0745 4.4668 37 1 8.8953 3.1646 -0.6636 38 1 7.1216 3.2812 -0.7563 39 1 7.1845 5.3634 0.5837 40 1 8.9574 5.2448 0.6895 41 1 7.3414 5.5026 -1.8872 42 1 8.2763 6.8050 -1.1132 43 1 9.1143 5.3841 -1.7812 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138525670.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:19 Heat of formation + Delta-G solvation = 6.783810 kcal Electronic energy + Delta-G solvation = -19694.805236 eV Core-core repulsion = 16865.610977 eV Total energy + Delta-G solvation = -2829.194260 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.30389 -36.87716 -34.90193 -33.08855 -32.34134 -30.36238 -27.85001 -27.00268 -25.03225 -23.50851 -22.57026 -21.61996 -21.36191 -19.73553 -18.50645 -16.71353 -16.41183 -15.30013 -14.96020 -14.93435 -14.46190 -14.17530 -13.95411 -13.70740 -13.42542 -13.15526 -12.78177 -12.46209 -12.27679 -12.09657 -11.74766 -11.63188 -11.53175 -11.33929 -11.22808 -11.11752 -10.86252 -10.83697 -10.69584 -10.54805 -10.40917 -10.25289 -10.11051 -9.63683 -9.21579 -8.41843 -8.16306 -8.11127 -7.25156 -6.01553 -4.02539 1.30329 1.95034 2.39798 3.00377 3.31765 3.39373 3.44682 4.44084 4.70818 4.84053 4.93145 4.95470 5.27190 5.29908 5.34544 5.38927 5.51877 5.57908 5.60566 5.64634 5.69463 5.75645 5.87860 5.91985 5.97095 6.00789 6.05115 6.12712 6.20291 6.29405 6.36332 6.39360 6.50981 6.57523 6.73371 6.82693 6.88736 7.23445 7.33497 7.83351 8.11885 8.19513 8.54581 9.05179 9.61665 11.08982 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015374 B = 0.004569 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.761138 B = 6126.699044 C = 7492.884622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.044 4.044 4 C -0.199 4.199 5 C -0.133 4.133 6 C -0.155 4.155 7 C -0.138 4.138 8 C 0.126 3.874 9 N -0.530 5.530 10 C 0.191 3.809 11 C -0.503 4.503 12 H 0.062 0.938 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.895 3.105 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.052 3.948 20 C -0.118 4.118 21 C -0.147 4.147 22 S 0.121 5.879 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.091 0.909 33 H 0.040 0.960 34 H -0.011 1.011 35 H 0.040 0.960 36 H 0.260 0.740 37 H 0.020 0.980 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.047 0.953 42 H 0.050 0.950 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.761 -3.000 -10.471 19.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.083 4.083 4 C -0.317 4.317 5 C -0.164 4.164 6 C -0.185 4.185 7 C -0.256 4.256 8 C -0.004 4.004 9 N -0.254 5.254 10 C 0.066 3.934 11 C -0.542 4.542 12 H 0.081 0.919 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.723 3.277 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.077 4.077 20 C -0.156 4.156 21 C -0.205 4.205 22 S 0.386 5.614 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.110 0.890 33 H 0.058 0.942 34 H 0.007 0.993 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.038 0.962 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.185 -2.722 -8.547 18.505 hybrid contribution 1.003 -0.501 -1.038 1.528 sum -15.183 -3.222 -9.585 18.242 Atomic orbital electron populations 1.21787 0.95738 1.01648 1.01798 1.21556 0.95465 0.96178 1.02600 1.20100 0.88108 0.97338 1.02782 1.24447 0.99184 1.11428 0.96604 1.19911 0.92891 1.04881 0.98668 1.19994 0.95909 1.06695 0.95909 1.24651 0.99257 1.05875 0.95857 1.20499 0.87256 0.92080 1.00558 1.62135 1.34061 1.12398 1.16829 1.19818 0.83525 0.97067 0.92970 1.21201 0.95113 1.46337 0.91565 0.91936 1.24975 0.95060 0.95519 0.99029 1.69969 1.00217 1.49173 1.34542 0.86482 0.78357 0.77762 0.85105 1.19619 1.21136 1.21023 1.22144 0.99170 0.94560 0.91818 1.21480 1.02880 0.94669 0.96553 1.21732 1.00985 0.99910 0.97859 1.84364 0.96186 1.72134 1.08751 0.92700 0.92749 0.92679 0.91745 0.91761 0.90565 0.91082 0.85308 0.85090 0.89033 0.94225 0.99330 0.94247 0.93021 0.96188 0.91702 0.91752 0.91356 0.93349 0.93105 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 3 C -0.04 -0.45 5.71 -27.88 -0.16 -0.61 16 4 C -0.20 -2.62 5.76 -36.00 -0.21 -2.82 16 5 C -0.13 -1.75 10.05 -41.21 -0.41 -2.17 16 6 C -0.15 -2.29 8.39 -41.21 -0.35 -2.64 16 7 C -0.14 -2.33 5.49 -36.00 -0.20 -2.53 16 8 C 0.13 2.45 5.28 -4.98 -0.03 2.42 16 9 N -0.53 -11.44 4.37 -237.52 -1.04 -12.48 16 10 C 0.19 4.93 4.59 -4.98 -0.02 4.90 16 11 C -0.50 -14.08 8.61 -34.44 -0.30 -14.38 16 12 H 0.06 1.75 7.66 -52.49 -0.40 1.35 16 13 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 15 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 C 0.05 0.96 4.82 -3.83 -0.02 0.94 16 20 C -0.12 -2.08 6.00 -26.73 -0.16 -2.24 16 21 C -0.15 -2.07 9.91 37.16 0.37 -1.70 16 22 S 0.12 1.89 23.31 -107.50 -2.51 -0.62 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.13 1.79 7.84 -52.49 -0.41 1.38 16 32 H 0.09 1.93 7.32 -51.93 -0.38 1.55 16 33 H 0.04 0.75 8.12 -51.93 -0.42 0.33 16 34 H -0.01 -0.30 8.00 -51.93 -0.42 -0.72 16 35 H 0.04 1.09 6.24 -51.93 -0.32 0.76 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 38 H 0.06 1.11 5.41 -51.93 -0.28 0.83 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.07 1.35 6.52 -51.93 -0.34 1.02 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 358.83 15.07 5.41 5.41 Total: -1.00 -29.24 358.83 -11.39 -40.63 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -7.60 Total: -2.37 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -1.37 Total: -21.37 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -0.30 Total: -38.38 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.51 Total: -0.62 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.24 -11.39 -40.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138525670.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.417 kcal (2) G-P(sol) polarization free energy of solvation -29.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds