Wall clock time and date at job start Tue Mar 31 2020 05:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47125 * 2 1 4 4 C 1.50697 * 109.47332 * 180.02562 * 3 2 1 5 5 C 1.33390 * 125.20412 * 89.71420 * 4 3 2 6 6 C 1.38421 * 114.91889 * 179.86454 * 5 4 3 7 7 C 1.33389 * 114.92287 * 0.42932 * 6 5 4 8 8 C 1.50700 * 125.20564 * 179.79866 * 7 6 5 9 9 N 1.46900 * 109.47524 * 89.99556 * 8 7 6 10 10 C 1.46893 * 111.00016 * 170.00252 * 9 8 7 11 11 C 1.50704 * 109.47437 * 284.31331 * 10 9 8 12 12 H 1.08000 * 119.99343 * 4.65293 * 11 10 9 13 13 C 1.37875 * 120.00610 * 184.66067 * 11 10 9 14 14 N 1.31515 * 119.99350 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00283 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46756 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.46977 * 119.99675 * 15 13 11 18 18 H 1.48493 * 109.46978 * 239.99764 * 15 13 11 19 19 C 1.46900 * 111.00093 * 293.95567 * 9 8 7 20 20 C 1.52997 * 109.47434 * 164.11095 * 19 9 8 21 21 C 1.52997 * 109.47605 * 179.57165 * 20 19 9 22 22 S 1.75879 * 109.59270 * 359.77177 * 7 6 5 23 23 H 1.08996 * 109.46714 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46814 * 60.00165 * 1 2 3 25 25 H 1.09003 * 109.46915 * 300.00541 * 1 2 3 26 26 H 1.08997 * 109.46949 * 119.99378 * 2 1 3 27 27 H 1.08993 * 109.47401 * 239.99737 * 2 1 3 28 28 H 1.09002 * 109.47042 * 300.00183 * 3 2 1 29 29 H 1.08993 * 109.47196 * 59.99611 * 3 2 1 30 30 H 1.07997 * 122.53698 * 0.02562 * 5 4 3 31 31 H 1.07999 * 122.53682 * 180.20070 * 6 5 4 32 32 H 1.08994 * 109.47409 * 210.00125 * 8 7 6 33 33 H 1.09004 * 109.46945 * 329.99650 * 8 7 6 34 34 H 1.09007 * 109.47736 * 44.31055 * 10 9 8 35 35 H 1.08996 * 109.47620 * 164.31261 * 10 9 8 36 36 H 0.97010 * 119.99794 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.47233 * 284.11647 * 19 9 8 38 38 H 1.09002 * 109.47027 * 44.11198 * 19 9 8 39 39 H 1.09006 * 109.47214 * 299.57829 * 20 19 9 40 40 H 1.09004 * 109.46562 * 59.56969 * 20 19 9 41 41 H 1.09006 * 109.46980 * 59.99862 * 21 20 19 42 42 H 1.08999 * 109.47150 * 180.02562 * 21 20 19 43 43 H 1.08996 * 109.46914 * 300.00291 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.3156 1.4373 -1.0909 6 6 5.6776 1.4416 -0.8443 7 6 6.0153 1.4412 0.4461 8 6 7.4264 1.4409 0.9749 9 7 7.8852 2.8257 1.1471 10 6 9.1583 2.8715 1.8784 11 6 8.9064 2.6161 3.3422 12 1 7.9132 2.3636 3.6830 13 6 9.9436 2.7051 4.2461 14 7 11.1531 3.0123 3.8309 15 14 9.6311 2.3892 6.0605 16 1 8.1966 2.0652 6.2665 17 1 10.4669 1.2493 6.5156 18 1 9.9811 3.6027 6.8416 19 6 7.9979 3.5080 -0.1490 20 6 8.0854 5.0188 0.0758 21 6 8.2134 5.7287 -1.2734 22 16 4.5616 1.4418 1.4361 23 1 -0.3632 -1.0276 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.9060 1.4329 -2.0902 31 1 6.4114 1.4413 -1.6368 32 1 7.4544 0.9268 1.9356 33 1 8.0789 0.9271 0.2689 34 1 9.8301 2.1075 1.4868 35 1 9.6137 3.8539 1.7542 36 1 11.8830 3.0745 4.4668 37 1 8.8953 3.1646 -0.6636 38 1 7.1216 3.2812 -0.7563 39 1 7.1845 5.3634 0.5837 40 1 8.9574 5.2448 0.6895 41 1 7.3414 5.5026 -1.8872 42 1 8.2763 6.8050 -1.1132 43 1 9.1143 5.3841 -1.7812 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138525670.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:19 Heat of formation + Delta-G solvation = -7.930921 kcal Electronic energy + Delta-G solvation = -19695.443315 eV Core-core repulsion = 16865.610977 eV Total energy + Delta-G solvation = -2829.832338 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.63804 -38.27301 -35.81393 -34.95612 -33.97463 -31.59963 -29.33935 -28.54835 -26.35287 -25.03061 -23.96075 -22.96271 -22.26409 -21.37665 -19.64176 -18.63087 -17.84050 -16.87809 -16.38406 -16.15757 -15.82543 -15.65053 -15.46418 -14.84797 -14.53757 -14.29255 -14.10954 -13.95266 -13.56309 -13.28188 -13.21444 -13.13697 -12.78557 -12.63684 -12.58452 -12.41104 -12.33730 -12.17132 -12.00166 -11.95022 -11.78850 -11.60965 -11.37589 -11.33078 -11.25878 -10.60382 -9.36783 -9.32314 -9.00263 -8.20609 -6.30118 0.13473 0.77120 1.23540 1.38502 1.39397 1.52929 1.87399 2.39421 3.10545 3.35306 3.83472 3.94636 4.10102 4.13827 4.21424 4.23224 4.33124 4.46821 4.53847 4.65206 4.66645 4.69994 4.75496 4.82198 4.86395 4.90447 4.97721 5.01392 5.11113 5.14772 5.21884 5.25244 5.26977 5.35657 5.39723 5.42281 5.45841 5.48227 5.66332 5.72313 6.07517 6.34295 6.61277 6.84689 7.39089 8.89985 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015374 B = 0.004569 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.761138 B = 6126.699044 C = 7492.884622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.045 4.045 4 C -0.176 4.176 5 C -0.139 4.139 6 C -0.136 4.136 7 C -0.171 4.171 8 C 0.133 3.867 9 N -0.538 5.538 10 C 0.208 3.792 11 C -0.518 4.518 12 H 0.056 0.944 13 C 0.004 3.996 14 N -0.933 5.933 15 Si 0.964 3.036 16 H -0.266 1.266 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.054 3.946 20 C -0.115 4.115 21 C -0.138 4.138 22 S 0.080 5.920 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.162 0.838 31 H 0.145 0.855 32 H 0.064 0.936 33 H 0.041 0.959 34 H -0.039 1.039 35 H 0.016 0.984 36 H 0.264 0.736 37 H 0.016 0.984 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.036 0.964 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.175 -2.972 -11.804 21.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.084 4.084 4 C -0.294 4.294 5 C -0.169 4.169 6 C -0.168 4.168 7 C -0.289 4.289 8 C 0.004 3.996 9 N -0.262 5.262 10 C 0.082 3.918 11 C -0.557 4.557 12 H 0.074 0.926 13 C -0.194 4.194 14 N -0.574 5.574 15 Si 0.789 3.211 16 H -0.190 1.190 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.073 4.073 20 C -0.153 4.153 21 C -0.195 4.195 22 S 0.345 5.655 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.116 0.884 29 H 0.091 0.909 30 H 0.180 0.820 31 H 0.162 0.838 32 H 0.083 0.917 33 H 0.059 0.941 34 H -0.021 1.021 35 H 0.034 0.966 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.613 -2.697 -9.893 21.251 hybrid contribution 1.681 -0.530 -0.703 1.898 sum -16.931 -3.227 -10.597 20.233 Atomic orbital electron populations 1.21763 0.94267 1.02263 1.02385 1.21525 0.96708 0.95177 1.02125 1.20256 0.85843 0.98371 1.03921 1.24836 1.00417 1.09253 0.94897 1.20186 0.91920 1.04651 1.00129 1.20259 0.97253 1.04090 0.95152 1.24287 0.97853 1.09837 0.96883 1.20287 0.89405 0.90516 0.99412 1.62067 1.31385 1.14200 1.18574 1.19431 0.84922 0.94601 0.92824 1.21454 0.94931 1.46427 0.92879 0.92564 1.25845 0.94715 0.95075 1.03765 1.70083 1.01110 1.49928 1.36248 0.85410 0.78474 0.77926 0.79305 1.19046 1.20250 1.20280 1.22218 0.99850 0.94790 0.90485 1.21449 1.01016 0.94476 0.98387 1.21660 1.02066 1.00233 0.95591 1.84476 0.96996 1.73060 1.11001 0.92138 0.91671 0.92597 0.93026 0.91512 0.88364 0.90927 0.82044 0.83769 0.91709 0.94138 1.02140 0.96593 0.92696 0.96574 0.89533 0.92430 0.94510 0.91423 0.91772 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.09 16 2 C -0.12 -1.84 5.92 30.60 0.18 -1.66 16 3 C -0.04 -0.78 5.71 29.85 0.17 -0.61 16 4 C -0.18 -4.22 5.76 24.59 0.14 -4.08 16 5 C -0.14 -3.22 10.05 21.22 0.21 -3.01 16 6 C -0.14 -3.76 8.39 21.22 0.18 -3.59 16 7 C -0.17 -5.74 5.49 24.59 0.13 -5.60 16 8 C 0.13 5.38 5.28 85.56 0.45 5.84 16 9 N -0.54 -24.12 4.37 -905.38 -3.96 -28.08 16 10 C 0.21 11.34 4.59 85.56 0.39 11.73 16 11 C -0.52 -30.16 8.61 25.60 0.22 -29.94 16 12 H 0.06 3.27 7.66 -2.91 -0.02 3.25 16 13 C 0.00 0.23 5.46 84.65 0.46 0.69 16 14 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 15 Si 0.96 45.32 29.54 68.60 2.03 47.34 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 C 0.05 2.03 4.82 86.30 0.42 2.45 16 20 C -0.12 -4.10 6.00 30.59 0.18 -3.92 16 21 C -0.14 -3.64 9.91 71.98 0.71 -2.92 16 22 S 0.08 2.49 23.31 -56.49 -1.32 1.17 16 23 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 31 H 0.14 3.56 7.84 -2.91 -0.02 3.54 16 32 H 0.06 2.91 7.32 -2.39 -0.02 2.89 16 33 H 0.04 1.59 8.12 -2.38 -0.02 1.57 16 34 H -0.04 -2.29 8.00 -2.38 -0.02 -2.31 16 35 H 0.02 0.94 6.24 -2.39 -0.01 0.92 16 36 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 37 H 0.02 0.61 8.05 -2.39 -0.02 0.59 16 38 H 0.09 2.85 5.41 -2.39 -0.01 2.83 16 39 H 0.06 2.09 8.14 -2.38 -0.02 2.08 16 40 H 0.04 1.52 6.52 -2.39 -0.02 1.50 16 41 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -64.94 358.83 2.56 -62.39 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.95 Total: 9.41 kcal Atomic # 6 Polarization: -40.28 SS G_CDS: 4.57 Total: -35.71 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -3.67 Total: -84.60 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -1.32 Total: 1.17 kcal Total: -64.94 2.56 -62.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138525670.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.455 kcal (2) G-P(sol) polarization free energy of solvation -64.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds