Wall clock time and date at job start Tue Mar 31 2020 05:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46979 * 2 1 4 4 C 1.52996 * 109.46950 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46936 * 180.02562 * 4 3 2 6 6 C 1.36941 * 120.00352 * 270.00150 * 5 4 3 7 7 H 1.08004 * 119.99890 * 323.22283 * 6 5 4 8 8 C 1.38814 * 120.00174 * 143.20894 * 6 5 4 9 9 N 1.31622 * 119.99617 * 156.79317 * 8 6 5 10 10 Si 1.86798 * 120.00021 * 336.79677 * 8 6 5 11 11 H 1.48504 * 109.47190 * 95.40002 * 10 8 6 12 12 H 1.48495 * 109.46969 * 215.39711 * 10 8 6 13 13 H 1.48497 * 109.47282 * 335.39897 * 10 8 6 14 14 C 1.46497 * 120.00157 * 90.00509 * 5 4 3 15 15 C 1.50702 * 109.47363 * 89.03530 * 14 5 4 16 16 C 1.33383 * 125.20505 * 85.51722 * 15 14 5 17 17 C 1.38422 * 114.92414 * 179.79351 * 16 15 14 18 18 C 1.33392 * 114.91647 * 0.43247 * 17 16 15 19 19 C 1.50695 * 125.20228 * 179.85992 * 18 17 16 20 20 C 1.52998 * 109.47511 * 89.72039 * 19 18 17 21 21 C 1.53003 * 109.47521 * 180.02562 * 20 19 18 22 22 S 1.75882 * 109.59644 * 359.59325 * 18 17 16 23 23 H 1.09001 * 109.47079 * 59.99466 * 1 2 3 24 24 H 1.08995 * 109.46999 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46915 * 299.99613 * 1 2 3 26 26 H 1.08995 * 109.47046 * 240.00798 * 2 1 3 27 27 H 1.08997 * 109.47660 * 120.00090 * 2 1 3 28 28 H 1.09001 * 109.46981 * 60.00428 * 3 2 1 29 29 H 1.09000 * 109.47465 * 300.00702 * 3 2 1 30 30 H 1.09008 * 109.47163 * 60.00648 * 4 3 2 31 31 H 1.08997 * 109.47820 * 300.00171 * 4 3 2 32 32 H 0.96999 * 119.99045 * 180.02562 * 9 8 6 33 33 H 1.09000 * 109.46986 * 329.03068 * 14 5 4 34 34 H 1.09008 * 109.47289 * 209.03430 * 14 5 4 35 35 H 1.07998 * 122.53805 * 0.02898 * 16 15 14 36 36 H 1.07995 * 122.54688 * 180.27835 * 17 16 15 37 37 H 1.09006 * 109.47380 * 329.71951 * 19 18 17 38 38 H 1.09001 * 109.47427 * 209.71766 * 19 18 17 39 39 H 1.08997 * 109.47306 * 60.00012 * 20 19 18 40 40 H 1.08999 * 109.47007 * 300.00014 * 20 19 18 41 41 H 1.09007 * 109.46930 * 59.99706 * 21 20 19 42 42 H 1.08999 * 109.46942 * 299.99993 * 21 20 19 43 43 H 1.09002 * 109.47162 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.2870 3.4698 -1.1843 7 1 4.6891 2.9263 -2.0266 8 6 4.0018 4.8230 -1.3037 9 7 4.6097 5.5452 -2.2210 10 14 2.7555 5.6191 -0.1626 11 1 3.4622 6.2404 0.9863 12 1 2.0021 6.6627 -0.9032 13 1 1.8113 4.5873 0.3364 14 6 4.3020 3.5140 1.2703 15 6 5.7181 3.2577 1.7177 16 6 6.7849 3.9603 1.3339 17 6 7.9860 3.5425 1.8805 18 6 7.8958 2.4949 2.7012 19 6 9.0543 1.8502 3.4176 20 6 9.2564 2.5284 4.7741 21 6 10.4330 1.8743 5.5012 22 16 6.2168 1.9857 2.8254 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8935 -0.5138 0.8899 28 1 1.6767 1.9564 0.8900 29 1 1.6766 1.9565 -0.8899 30 1 3.9337 0.9287 -0.8892 31 1 3.9331 0.9289 0.8908 32 1 4.4106 6.4909 -2.3041 33 1 3.6094 3.1418 2.0251 34 1 4.1517 4.5853 1.1359 35 1 6.7162 4.7945 0.6514 36 1 8.9254 4.0264 1.6574 37 1 9.9583 1.9596 2.8185 38 1 8.8444 0.7913 3.5686 39 1 8.3524 2.4191 5.3733 40 1 9.4663 3.5873 4.6232 41 1 11.3368 1.9841 4.9018 42 1 10.2235 0.8154 5.6521 43 1 10.5772 2.3579 6.4674 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138528532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:14 Heat of formation + Delta-G solvation = 22.678457 kcal Electronic energy + Delta-G solvation = -19908.755957 eV Core-core repulsion = 17080.250941 eV Total energy + Delta-G solvation = -2828.505016 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -37.79755 -36.55394 -34.86982 -33.95775 -31.69137 -30.37459 -28.47026 -27.10498 -24.48999 -23.88432 -22.46508 -21.28747 -21.08628 -20.10226 -18.35234 -17.08387 -16.12282 -15.41713 -14.95317 -14.77672 -14.60229 -14.35184 -13.70217 -13.59685 -13.24460 -13.01200 -12.65984 -12.41611 -12.39006 -12.10659 -12.07922 -11.77411 -11.39558 -11.34149 -11.14736 -10.98859 -10.87290 -10.72342 -10.68512 -10.55505 -10.35262 -10.27003 -9.87280 -9.86130 -9.57774 -8.57703 -7.90111 -7.80388 -6.93812 -6.05396 -3.43511 1.60088 2.20233 2.60810 3.25837 3.40264 3.45875 3.48050 4.46929 4.87366 4.95890 4.99776 5.05643 5.20629 5.34982 5.45242 5.50374 5.54680 5.54817 5.67139 5.71664 5.76287 5.88877 5.91950 5.98671 6.05875 6.11762 6.17422 6.24213 6.25444 6.27363 6.30638 6.39122 6.43715 6.50289 6.60295 6.82652 6.88705 7.06182 7.10104 7.23203 7.98248 8.34079 8.90978 9.64737 10.04860 11.09792 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015215 B = 0.005309 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.868349 B = 5272.543531 C = 6572.260490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.151 3.849 5 N -0.591 5.591 6 C -0.263 4.263 7 H 0.079 0.921 8 C 0.040 3.960 9 N -0.893 5.893 10 Si 0.865 3.135 11 H -0.284 1.284 12 H -0.299 1.299 13 H -0.264 1.264 14 C 0.197 3.803 15 C -0.150 4.150 16 C -0.137 4.137 17 C -0.122 4.122 18 C -0.199 4.199 19 C -0.041 4.041 20 C -0.120 4.120 21 C -0.152 4.152 22 S 0.049 5.951 23 H 0.052 0.948 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.264 0.736 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.140 0.860 36 H 0.128 0.872 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.685 -7.987 11.917 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.179 4.179 4 C 0.025 3.975 5 N -0.311 5.311 6 C -0.391 4.391 7 H 0.097 0.903 8 C -0.161 4.161 9 N -0.533 5.533 10 Si 0.695 3.305 11 H -0.212 1.212 12 H -0.227 1.227 13 H -0.189 1.189 14 C 0.069 3.931 15 C -0.270 4.270 16 C -0.166 4.166 17 C -0.153 4.153 18 C -0.316 4.316 19 C -0.080 4.080 20 C -0.158 4.158 21 C -0.209 4.209 22 S 0.311 5.689 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.158 0.842 36 H 0.146 0.854 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.923 -8.967 12.563 15.709 hybrid contribution 0.078 1.773 -0.350 1.809 sum 3.001 -7.194 12.213 14.488 Atomic orbital electron populations 1.21767 0.96673 1.00647 1.01634 1.21498 0.95164 0.98062 1.01294 1.22208 0.98918 0.94821 1.01981 1.20935 0.91274 0.86024 0.99270 1.44177 1.73858 1.11668 1.01432 1.18773 1.37440 0.92858 0.90068 0.90316 1.25412 0.97650 0.96667 0.96371 1.69891 1.40543 1.06856 1.36060 0.87107 0.83967 0.79130 0.80323 1.21221 1.22714 1.18866 1.19914 0.87183 0.97946 0.88068 1.25857 1.02511 0.98237 1.00381 1.20090 0.91029 1.03190 1.02324 1.20049 0.99066 0.97402 0.98822 1.24172 0.97319 1.03029 1.07118 1.20055 0.94364 0.98574 0.95019 1.21553 0.98562 1.00144 0.95501 1.21788 0.98337 1.00671 1.00116 1.83879 1.00996 1.36544 1.47457 0.92868 0.93470 0.93179 0.92303 0.92716 0.93237 0.91589 0.92939 0.94355 0.92638 0.93298 0.90867 0.84237 0.85389 0.90698 0.91426 0.91896 0.91740 0.92743 0.92808 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.56 16 2 C -0.12 -1.76 5.93 -26.73 -0.16 -1.91 16 3 C -0.14 -2.52 5.54 -26.73 -0.15 -2.67 16 4 C 0.15 2.99 5.67 -4.04 -0.02 2.97 16 5 N -0.59 -13.78 2.07 -174.61 -0.36 -14.14 16 6 C -0.26 -7.14 9.91 -15.06 -0.15 -7.29 16 7 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 8 C 0.04 1.12 5.29 -17.43 -0.09 1.03 16 9 N -0.89 -26.51 13.97 55.49 0.78 -25.73 16 10 Si 0.86 21.51 25.07 -169.99 -4.26 17.25 16 11 H -0.28 -6.91 6.66 56.52 0.38 -6.53 16 12 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 13 H -0.26 -6.39 7.11 56.52 0.40 -5.99 16 14 C 0.20 4.32 4.97 -5.19 -0.03 4.29 16 15 C -0.15 -3.06 6.09 -36.00 -0.22 -3.28 16 16 C -0.14 -2.80 10.05 -41.21 -0.41 -3.21 16 17 C -0.12 -2.12 10.05 -41.21 -0.41 -2.54 16 18 C -0.20 -3.15 5.76 -36.00 -0.21 -3.36 16 19 C -0.04 -0.50 5.71 -27.89 -0.16 -0.66 16 20 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 21 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 22 S 0.05 0.83 23.31 -107.50 -2.51 -1.68 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.05 1.06 8.04 -51.92 -0.42 0.64 16 31 H 0.04 0.70 8.07 -51.93 -0.42 0.29 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 34 H 0.07 1.74 3.28 -51.92 -0.17 1.57 16 35 H 0.14 3.11 8.06 -52.49 -0.42 2.69 16 36 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 359.96 15.07 5.42 5.42 Total: -1.00 -28.66 359.96 -10.14 -38.79 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -7.77 Total: 0.65 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: -1.43 Total: -20.56 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.41 Total: -39.87 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.26 Total: 17.25 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.66 -10.14 -38.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138528532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.473 kcal (2) G-P(sol) polarization free energy of solvation -28.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds