Wall clock time and date at job start Tue Mar 31 2020 05:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46979 * 2 1 4 4 C 1.52996 * 109.46950 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46936 * 180.02562 * 4 3 2 6 6 C 1.36941 * 120.00352 * 270.00150 * 5 4 3 7 7 H 1.08004 * 119.99890 * 323.22283 * 6 5 4 8 8 C 1.38814 * 120.00174 * 143.20894 * 6 5 4 9 9 N 1.31622 * 119.99617 * 156.79317 * 8 6 5 10 10 Si 1.86798 * 120.00021 * 336.79677 * 8 6 5 11 11 H 1.48504 * 109.47190 * 95.40002 * 10 8 6 12 12 H 1.48495 * 109.46969 * 215.39711 * 10 8 6 13 13 H 1.48497 * 109.47282 * 335.39897 * 10 8 6 14 14 C 1.46497 * 120.00157 * 90.00509 * 5 4 3 15 15 C 1.50702 * 109.47363 * 89.03530 * 14 5 4 16 16 C 1.33383 * 125.20505 * 85.51722 * 15 14 5 17 17 C 1.38422 * 114.92414 * 179.79351 * 16 15 14 18 18 C 1.33392 * 114.91647 * 0.43247 * 17 16 15 19 19 C 1.50695 * 125.20228 * 179.85992 * 18 17 16 20 20 C 1.52998 * 109.47511 * 89.72039 * 19 18 17 21 21 C 1.53003 * 109.47521 * 180.02562 * 20 19 18 22 22 S 1.75882 * 109.59644 * 359.59325 * 18 17 16 23 23 H 1.09001 * 109.47079 * 59.99466 * 1 2 3 24 24 H 1.08995 * 109.46999 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46915 * 299.99613 * 1 2 3 26 26 H 1.08995 * 109.47046 * 240.00798 * 2 1 3 27 27 H 1.08997 * 109.47660 * 120.00090 * 2 1 3 28 28 H 1.09001 * 109.46981 * 60.00428 * 3 2 1 29 29 H 1.09000 * 109.47465 * 300.00702 * 3 2 1 30 30 H 1.09008 * 109.47163 * 60.00648 * 4 3 2 31 31 H 1.08997 * 109.47820 * 300.00171 * 4 3 2 32 32 H 0.96999 * 119.99045 * 180.02562 * 9 8 6 33 33 H 1.09000 * 109.46986 * 329.03068 * 14 5 4 34 34 H 1.09008 * 109.47289 * 209.03430 * 14 5 4 35 35 H 1.07998 * 122.53805 * 0.02898 * 16 15 14 36 36 H 1.07995 * 122.54688 * 180.27835 * 17 16 15 37 37 H 1.09006 * 109.47380 * 329.71951 * 19 18 17 38 38 H 1.09001 * 109.47427 * 209.71766 * 19 18 17 39 39 H 1.08997 * 109.47306 * 60.00012 * 20 19 18 40 40 H 1.08999 * 109.47007 * 300.00014 * 20 19 18 41 41 H 1.09007 * 109.46930 * 59.99706 * 21 20 19 42 42 H 1.08999 * 109.46942 * 299.99993 * 21 20 19 43 43 H 1.09002 * 109.47162 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.2870 3.4698 -1.1843 7 1 4.6891 2.9263 -2.0266 8 6 4.0018 4.8230 -1.3037 9 7 4.6097 5.5452 -2.2210 10 14 2.7555 5.6191 -0.1626 11 1 3.4622 6.2404 0.9863 12 1 2.0021 6.6627 -0.9032 13 1 1.8113 4.5873 0.3364 14 6 4.3020 3.5140 1.2703 15 6 5.7181 3.2577 1.7177 16 6 6.7849 3.9603 1.3339 17 6 7.9860 3.5425 1.8805 18 6 7.8958 2.4949 2.7012 19 6 9.0543 1.8502 3.4176 20 6 9.2564 2.5284 4.7741 21 6 10.4330 1.8743 5.5012 22 16 6.2168 1.9857 2.8254 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8935 -0.5138 0.8899 28 1 1.6767 1.9564 0.8900 29 1 1.6766 1.9565 -0.8899 30 1 3.9337 0.9287 -0.8892 31 1 3.9331 0.9289 0.8908 32 1 4.4106 6.4909 -2.3041 33 1 3.6094 3.1418 2.0251 34 1 4.1517 4.5853 1.1359 35 1 6.7162 4.7945 0.6514 36 1 8.9254 4.0264 1.6574 37 1 9.9583 1.9596 2.8185 38 1 8.8444 0.7913 3.5686 39 1 8.3524 2.4191 5.3733 40 1 9.4663 3.5873 4.6232 41 1 11.3368 1.9841 4.9018 42 1 10.2235 0.8154 5.6521 43 1 10.5772 2.3579 6.4674 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138528532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:13 Heat of formation + Delta-G solvation = 9.678085 kcal Electronic energy + Delta-G solvation = -19909.319696 eV Core-core repulsion = 17080.250941 eV Total energy + Delta-G solvation = -2829.068754 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.30157 -38.11199 -35.98040 -35.34146 -33.69264 -31.69326 -29.80560 -28.62284 -26.10456 -25.32169 -23.81974 -22.55899 -22.24342 -21.65438 -19.89833 -18.89716 -17.60139 -17.26363 -16.34559 -16.09288 -16.00237 -15.73142 -15.11766 -14.90821 -14.52047 -14.43269 -14.24760 -13.98594 -13.62137 -13.51914 -13.36247 -13.14193 -12.81583 -12.74103 -12.53730 -12.30135 -12.20593 -12.05327 -11.92109 -11.84448 -11.77156 -11.68415 -11.46973 -11.40849 -11.31056 -10.67779 -9.30045 -9.25678 -8.86188 -8.22752 -5.58346 0.15943 0.79332 1.14502 1.25594 1.37614 1.47946 1.91388 2.38278 3.04724 3.37427 3.84032 4.05083 4.12609 4.13764 4.19000 4.22461 4.36939 4.39985 4.50288 4.51935 4.62915 4.66041 4.77381 4.81624 4.86254 4.92495 4.96948 5.01395 5.03037 5.06125 5.16951 5.24118 5.26331 5.37759 5.39628 5.47026 5.47778 5.57810 5.58752 5.73850 5.91431 6.15317 6.92555 7.57884 8.00595 8.96806 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015215 B = 0.005309 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.868349 B = 5272.543531 C = 6572.260490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.132 4.132 4 C 0.149 3.851 5 N -0.602 5.602 6 C -0.249 4.249 7 H 0.039 0.961 8 C -0.008 4.008 9 N -0.942 5.942 10 Si 0.925 3.075 11 H -0.278 1.278 12 H -0.307 1.307 13 H -0.251 1.251 14 C 0.197 3.803 15 C -0.187 4.187 16 C -0.147 4.147 17 C -0.144 4.144 18 C -0.178 4.178 19 C -0.042 4.042 20 C -0.117 4.117 21 C -0.148 4.148 22 S 0.097 5.903 23 H 0.044 0.956 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.038 0.962 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.263 0.737 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.106 0.894 36 H 0.147 0.853 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.933 -10.151 14.906 18.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.171 4.171 4 C 0.025 3.975 5 N -0.324 5.324 6 C -0.379 4.379 7 H 0.057 0.943 8 C -0.205 4.205 9 N -0.585 5.585 10 Si 0.754 3.246 11 H -0.205 1.205 12 H -0.235 1.235 13 H -0.175 1.175 14 C 0.070 3.930 15 C -0.306 4.306 16 C -0.177 4.177 17 C -0.174 4.174 18 C -0.295 4.295 19 C -0.081 4.081 20 C -0.155 4.155 21 C -0.205 4.205 22 S 0.360 5.640 23 H 0.064 0.936 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.124 0.876 36 H 0.164 0.836 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.158 -11.164 15.588 19.432 hybrid contribution 0.142 2.329 -1.215 2.630 sum 3.299 -8.835 14.373 17.191 Atomic orbital electron populations 1.21751 0.95306 1.02083 1.01424 1.21451 0.96334 0.95334 1.02287 1.22083 0.97279 0.97257 1.00521 1.21052 0.92594 0.84178 0.99718 1.44245 1.74792 1.12642 1.00686 1.18554 1.35946 0.92738 0.90698 0.94336 1.25897 0.99178 0.97272 0.98157 1.70005 1.42579 1.07117 1.38823 0.86133 0.81646 0.78235 0.78613 1.20510 1.23513 1.17517 1.19804 0.88856 0.96580 0.87763 1.25600 1.01616 1.00677 1.02726 1.20092 0.92859 1.02616 1.02179 1.20106 0.98676 0.98710 0.99903 1.24726 0.98011 1.01579 1.05227 1.20249 0.93201 0.99064 0.95605 1.21523 0.99413 0.99944 0.94620 1.21756 0.97507 1.00947 1.00325 1.83588 1.01223 1.33923 1.45252 0.93644 0.91216 0.92901 0.92042 0.90981 0.93391 0.94293 0.93950 0.92296 0.92838 0.91103 0.93229 0.87573 0.83575 0.89233 0.90066 0.92332 0.92246 0.92093 0.92087 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.91 71.98 0.71 -2.73 16 2 C -0.12 -3.07 5.93 30.60 0.18 -2.89 16 3 C -0.13 -4.62 5.54 30.60 0.17 -4.45 16 4 C 0.15 5.84 5.67 86.38 0.49 6.33 16 5 N -0.60 -28.42 2.07 -706.33 -1.46 -29.89 16 6 C -0.25 -14.15 9.91 84.03 0.83 -13.32 16 7 H 0.04 2.46 8.06 -2.91 -0.02 2.43 16 8 C -0.01 -0.46 5.29 84.86 0.45 -0.01 16 9 N -0.94 -58.73 13.97 21.65 0.30 -58.43 16 10 Si 0.92 45.94 25.07 68.60 1.72 47.66 16 11 H -0.28 -13.34 6.66 99.48 0.66 -12.68 16 12 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16 13 H -0.25 -11.80 7.11 99.48 0.71 -11.09 16 14 C 0.20 8.60 4.97 85.63 0.43 9.03 16 15 C -0.19 -7.55 6.09 24.59 0.15 -7.40 16 16 C -0.15 -6.12 10.05 21.21 0.21 -5.91 16 17 C -0.14 -4.86 10.05 21.22 0.21 -4.64 16 18 C -0.18 -5.19 5.76 24.59 0.14 -5.05 16 19 C -0.04 -0.87 5.71 29.85 0.17 -0.70 16 20 C -0.12 -2.13 5.92 30.59 0.18 -1.95 16 21 C -0.15 -2.03 9.91 71.98 0.71 -1.31 16 22 S 0.10 3.05 23.31 -56.49 -1.32 1.73 16 23 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 28 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.04 1.72 8.04 -2.38 -0.02 1.70 16 31 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 32 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 33 H 0.07 2.72 8.08 -2.39 -0.02 2.70 16 34 H 0.05 2.39 3.28 -2.38 -0.01 2.38 16 35 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 36 H 0.15 4.29 8.06 -2.91 -0.02 4.26 16 37 H 0.09 1.68 8.14 -2.38 -0.02 1.67 16 38 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -64.61 359.96 5.18 -59.43 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.90 Total: 14.49 kcal Atomic # 6 Polarization: -40.04 SS G_CDS: 5.05 Total: -35.00 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -1.16 Total: -88.32 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.72 Total: 47.66 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.32 Total: 1.73 kcal Total: -64.61 5.18 -59.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138528532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.106 kcal (2) G-P(sol) polarization free energy of solvation -64.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds