Wall clock time and date at job start Tue Mar 31 2020 05:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47457 * 2 1 4 4 C 1.52995 * 109.47457 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47077 * 179.28695 * 4 3 2 6 6 C 1.46890 * 111.00235 * 287.84799 * 5 4 3 7 7 C 1.50699 * 109.47252 * 299.35602 * 6 5 4 8 8 H 1.08006 * 120.00120 * 4.64426 * 7 6 5 9 9 C 1.37879 * 120.00458 * 184.64956 * 7 6 5 10 10 N 1.31516 * 119.99659 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00361 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47346 * 90.00022 * 11 9 7 13 13 H 1.48504 * 109.46918 * 210.00094 * 11 9 7 14 14 H 1.48508 * 109.47075 * 329.99740 * 11 9 7 15 15 C 1.46904 * 110.99753 * 163.89185 * 5 4 3 16 16 C 1.50702 * 109.46805 * 189.99676 * 15 5 4 17 17 C 1.38426 * 122.54170 * 260.02584 * 16 15 5 18 18 C 1.33391 * 114.91994 * 179.97438 * 17 16 15 19 19 C 1.50695 * 125.20230 * 179.97438 * 18 17 16 20 20 S 1.75887 * 109.59330 * 0.02562 * 18 17 16 21 21 C 1.33386 * 122.53769 * 79.74644 * 16 15 5 22 22 C 1.50700 * 125.20515 * 0.02562 * 21 16 15 23 23 H 1.09005 * 109.47257 * 300.00043 * 1 2 3 24 24 H 1.09004 * 109.47145 * 60.00309 * 1 2 3 25 25 H 1.09000 * 109.47493 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47560 * 239.99537 * 2 1 3 27 27 H 1.09004 * 109.47145 * 119.99690 * 2 1 3 28 28 H 1.09004 * 109.47202 * 59.99281 * 3 2 1 29 29 H 1.09004 * 109.46690 * 299.99968 * 3 2 1 30 30 H 1.08997 * 109.47125 * 59.28650 * 4 3 2 31 31 H 1.08998 * 109.47091 * 299.28279 * 4 3 2 32 32 H 1.09004 * 109.47465 * 59.35050 * 6 5 4 33 33 H 1.09004 * 109.47539 * 179.35558 * 6 5 4 34 34 H 0.97000 * 119.99991 * 179.97438 * 10 9 7 35 35 H 1.09008 * 109.46995 * 70.00506 * 15 5 4 36 36 H 1.08997 * 109.47453 * 310.00190 * 15 5 4 37 37 H 1.07993 * 122.53848 * 359.95916 * 17 16 15 38 38 H 1.08998 * 109.47712 * 89.99505 * 19 18 17 39 39 H 1.09004 * 109.47087 * 210.00007 * 19 18 17 40 40 H 1.09007 * 109.47354 * 329.99667 * 19 18 17 41 41 H 1.09004 * 109.47059 * 90.00612 * 22 21 16 42 42 H 1.09000 * 109.47510 * 210.00892 * 22 21 16 43 43 H 1.09008 * 109.47235 * 330.01203 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0596 2.8274 -0.0166 6 6 3.8394 3.4473 -1.3299 7 6 4.5868 2.6712 -2.3835 8 1 5.1057 1.7619 -2.1180 9 6 4.6084 3.1218 -3.6864 10 7 3.9763 4.2288 -4.0098 11 14 5.5354 2.1601 -4.9922 12 1 4.6253 1.1648 -5.6135 13 1 6.0335 3.0937 -6.0342 14 1 6.6847 1.4575 -4.3669 15 6 5.4772 2.8892 0.3638 16 6 5.8786 4.3266 0.5738 17 6 6.5587 5.0575 -0.3851 18 6 6.8373 6.3155 -0.0399 19 6 7.5668 7.3120 -0.9035 20 16 6.2244 6.6328 1.5779 21 6 5.6008 4.9924 1.6957 22 6 4.8675 4.4251 2.8838 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9337 0.9175 -0.8826 31 1 3.9329 0.9400 0.8972 32 1 2.7742 3.4405 -1.5610 33 1 4.2006 4.4756 -1.3115 34 1 3.9917 4.5461 -4.9263 35 1 6.0856 2.4544 -0.4294 36 1 5.6305 2.3305 1.2870 37 1 6.8423 4.6407 -1.3401 38 1 6.8479 7.8603 -1.5122 39 1 8.1137 8.0102 -0.2698 40 1 8.2666 6.7862 -1.5531 41 1 5.5841 3.9803 3.5744 42 1 4.3226 5.2224 3.3892 43 1 4.1657 3.6620 2.5472 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138567836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:07 Heat of formation + Delta-G solvation = 7.399664 kcal Electronic energy + Delta-G solvation = -20541.471101 eV Core-core repulsion = 17712.303547 eV Total energy + Delta-G solvation = -2829.167554 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.50903 -36.46795 -34.09276 -32.79792 -32.12074 -29.32005 -28.36598 -27.32258 -25.07885 -23.66876 -23.21104 -21.49117 -20.38889 -19.45349 -17.67929 -16.54759 -16.20001 -15.25191 -14.82364 -14.57224 -14.23826 -13.71346 -13.53705 -13.36868 -12.92382 -12.85646 -12.72286 -12.50920 -12.16990 -12.08543 -11.99342 -11.49886 -11.19187 -11.09766 -11.05187 -10.82252 -10.74984 -10.67611 -10.49606 -10.39498 -10.26578 -9.97351 -9.91673 -9.79917 -9.51240 -8.39504 -7.83286 -7.72454 -7.09746 -5.99524 -4.07793 1.57396 2.15155 2.50826 3.25970 3.33655 3.35202 3.35543 4.40884 5.03962 5.30127 5.30693 5.37907 5.45597 5.55302 5.58484 5.61523 5.70012 5.85906 5.88949 5.90011 6.02383 6.04178 6.14387 6.18478 6.24967 6.26499 6.35341 6.37446 6.42537 6.53069 6.56032 6.62860 6.81271 6.93084 6.98683 7.04952 7.27772 7.36959 7.60057 7.95731 8.11996 8.32156 8.37711 9.02729 9.57561 11.04929 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011201 B = 0.007174 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.162597 B = 3901.966570 C = 5909.301016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.109 4.109 4 C 0.059 3.941 5 N -0.536 5.536 6 C 0.187 3.813 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.067 3.933 10 N -0.887 5.887 11 Si 0.881 3.119 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.119 3.881 16 C -0.072 4.072 17 C -0.101 4.101 18 C -0.191 4.191 19 C -0.075 4.075 20 S 0.040 5.960 21 C -0.167 4.167 22 C -0.075 4.075 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.026 0.974 33 H 0.038 0.962 34 H 0.260 0.740 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.142 0.858 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.940 -0.293 10.491 10.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.147 4.147 4 C -0.069 4.069 5 N -0.259 5.259 6 C 0.062 3.938 7 C -0.582 4.582 8 H 0.073 0.927 9 C -0.135 4.135 10 N -0.526 5.526 11 Si 0.709 3.291 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.200 1.200 15 C -0.012 4.012 16 C -0.084 4.084 17 C -0.130 4.130 18 C -0.307 4.307 19 C -0.133 4.133 20 S 0.304 5.696 21 C -0.284 4.284 22 C -0.134 4.134 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.159 0.841 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.644 1.376 11.644 11.840 hybrid contribution 0.903 -2.066 -2.604 3.444 sum 2.548 -0.690 9.040 9.418 Atomic orbital electron populations 1.21751 0.96469 1.00732 1.01705 1.21480 0.95276 0.97891 1.01326 1.21498 0.95713 0.95169 1.02284 1.21953 0.94755 0.90695 0.99546 1.62549 1.14636 1.16108 1.32634 1.19758 0.96601 0.95214 0.82252 1.21687 1.33037 1.09396 0.94100 0.92701 1.24904 0.95425 0.94809 0.98377 1.69950 1.42523 1.21384 1.18730 0.86771 0.80299 0.80029 0.81977 1.20738 1.21233 1.20034 1.20550 0.91096 0.90484 0.99026 1.18702 0.99368 0.97889 0.92469 1.20117 0.99492 0.92981 1.00452 1.24140 1.09134 0.99190 0.98241 1.20235 0.99019 0.96476 0.97617 1.83758 1.57625 1.13896 1.14336 1.24031 1.07618 0.95627 1.01136 1.20263 0.99008 1.00847 0.93305 0.93084 0.92737 0.93478 0.92249 0.92807 0.92514 0.91366 0.93531 0.93564 0.95594 0.94387 0.92970 0.93171 0.92400 0.84058 0.91081 0.92174 0.90937 0.92030 0.92315 0.89324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.15 0.37 -1.53 16 2 C -0.12 -1.75 5.93 -26.73 -0.16 -1.91 16 3 C -0.11 -1.87 5.27 -26.73 -0.14 -2.01 16 4 C 0.06 1.10 4.80 -3.83 -0.02 1.08 16 5 N -0.54 -11.09 4.49 -237.52 -1.07 -12.15 16 6 C 0.19 4.69 4.76 -4.98 -0.02 4.67 16 7 C -0.54 -14.35 7.34 -34.44 -0.25 -14.60 16 8 H 0.05 1.45 5.95 -52.48 -0.31 1.13 16 9 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 10 N -0.89 -25.61 13.29 55.43 0.74 -24.88 16 11 Si 0.88 21.09 29.54 -169.99 -5.02 16.07 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 C 0.12 2.30 4.29 -4.97 -0.02 2.28 16 16 C -0.07 -1.38 4.45 -106.25 -0.47 -1.86 16 17 C -0.10 -1.98 8.92 -41.21 -0.37 -2.35 16 18 C -0.19 -3.33 6.51 -36.00 -0.23 -3.56 16 19 C -0.07 -1.07 10.38 36.00 0.37 -0.70 16 20 S 0.04 0.65 23.31 -107.50 -2.51 -1.86 16 21 C -0.17 -2.87 6.50 -36.00 -0.23 -3.10 16 22 C -0.08 -1.08 9.85 36.01 0.35 -0.72 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 1.35 6.74 -51.93 -0.35 1.00 16 30 H 0.05 0.97 6.13 -51.93 -0.32 0.65 16 31 H 0.05 0.77 7.81 -51.93 -0.41 0.36 16 32 H 0.03 0.71 6.68 -51.93 -0.35 0.36 16 33 H 0.04 1.05 6.51 -51.93 -0.34 0.72 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.05 1.07 6.56 -51.92 -0.34 0.72 16 36 H 0.06 0.99 7.50 -51.93 -0.39 0.60 16 37 H 0.14 3.00 8.06 -52.49 -0.42 2.58 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 1.35 7.36 -51.92 -0.38 0.96 16 LS Contribution 353.48 15.07 5.33 5.33 Total: -1.00 -28.13 353.48 -10.85 -38.98 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -7.39 Total: 1.08 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -0.93 Total: -22.57 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.33 Total: -37.03 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -2.51 Total: -1.86 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.13 -10.85 -38.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138567836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.376 kcal (2) G-P(sol) polarization free energy of solvation -28.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds