Wall clock time and date at job start Tue Mar 31 2020 05:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47457 * 2 1 4 4 C 1.52995 * 109.47457 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47077 * 179.28695 * 4 3 2 6 6 C 1.46890 * 111.00235 * 287.84799 * 5 4 3 7 7 C 1.50699 * 109.47252 * 299.35602 * 6 5 4 8 8 H 1.08006 * 120.00120 * 4.64426 * 7 6 5 9 9 C 1.37879 * 120.00458 * 184.64956 * 7 6 5 10 10 N 1.31516 * 119.99659 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00361 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47346 * 90.00022 * 11 9 7 13 13 H 1.48504 * 109.46918 * 210.00094 * 11 9 7 14 14 H 1.48508 * 109.47075 * 329.99740 * 11 9 7 15 15 C 1.46904 * 110.99753 * 163.89185 * 5 4 3 16 16 C 1.50702 * 109.46805 * 189.99676 * 15 5 4 17 17 C 1.38426 * 122.54170 * 260.02584 * 16 15 5 18 18 C 1.33391 * 114.91994 * 179.97438 * 17 16 15 19 19 C 1.50695 * 125.20230 * 179.97438 * 18 17 16 20 20 S 1.75887 * 109.59330 * 0.02562 * 18 17 16 21 21 C 1.33386 * 122.53769 * 79.74644 * 16 15 5 22 22 C 1.50700 * 125.20515 * 0.02562 * 21 16 15 23 23 H 1.09005 * 109.47257 * 300.00043 * 1 2 3 24 24 H 1.09004 * 109.47145 * 60.00309 * 1 2 3 25 25 H 1.09000 * 109.47493 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47560 * 239.99537 * 2 1 3 27 27 H 1.09004 * 109.47145 * 119.99690 * 2 1 3 28 28 H 1.09004 * 109.47202 * 59.99281 * 3 2 1 29 29 H 1.09004 * 109.46690 * 299.99968 * 3 2 1 30 30 H 1.08997 * 109.47125 * 59.28650 * 4 3 2 31 31 H 1.08998 * 109.47091 * 299.28279 * 4 3 2 32 32 H 1.09004 * 109.47465 * 59.35050 * 6 5 4 33 33 H 1.09004 * 109.47539 * 179.35558 * 6 5 4 34 34 H 0.97000 * 119.99991 * 179.97438 * 10 9 7 35 35 H 1.09008 * 109.46995 * 70.00506 * 15 5 4 36 36 H 1.08997 * 109.47453 * 310.00190 * 15 5 4 37 37 H 1.07993 * 122.53848 * 359.95916 * 17 16 15 38 38 H 1.08998 * 109.47712 * 89.99505 * 19 18 17 39 39 H 1.09004 * 109.47087 * 210.00007 * 19 18 17 40 40 H 1.09007 * 109.47354 * 329.99667 * 19 18 17 41 41 H 1.09004 * 109.47059 * 90.00612 * 22 21 16 42 42 H 1.09000 * 109.47510 * 210.00892 * 22 21 16 43 43 H 1.09008 * 109.47235 * 330.01203 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0596 2.8274 -0.0166 6 6 3.8394 3.4473 -1.3299 7 6 4.5868 2.6712 -2.3835 8 1 5.1057 1.7619 -2.1180 9 6 4.6084 3.1218 -3.6864 10 7 3.9763 4.2288 -4.0098 11 14 5.5354 2.1601 -4.9922 12 1 4.6253 1.1648 -5.6135 13 1 6.0335 3.0937 -6.0342 14 1 6.6847 1.4575 -4.3669 15 6 5.4772 2.8892 0.3638 16 6 5.8786 4.3266 0.5738 17 6 6.5587 5.0575 -0.3851 18 6 6.8373 6.3155 -0.0399 19 6 7.5668 7.3120 -0.9035 20 16 6.2244 6.6328 1.5779 21 6 5.6008 4.9924 1.6957 22 6 4.8675 4.4251 2.8838 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9337 0.9175 -0.8826 31 1 3.9329 0.9400 0.8972 32 1 2.7742 3.4405 -1.5610 33 1 4.2006 4.4756 -1.3115 34 1 3.9917 4.5461 -4.9263 35 1 6.0856 2.4544 -0.4294 36 1 5.6305 2.3305 1.2870 37 1 6.8423 4.6407 -1.3401 38 1 6.8479 7.8603 -1.5122 39 1 8.1137 8.0102 -0.2698 40 1 8.2666 6.7862 -1.5531 41 1 5.5841 3.9803 3.5744 42 1 4.3226 5.2224 3.3892 43 1 4.1657 3.6620 2.5472 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138567836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:07 Heat of formation + Delta-G solvation = -6.773974 kcal Electronic energy + Delta-G solvation = -20542.085717 eV Core-core repulsion = 17712.303547 eV Total energy + Delta-G solvation = -2829.782169 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.02131 -38.00160 -35.49760 -34.54160 -33.69923 -30.57740 -29.73981 -29.18910 -26.68190 -25.19051 -24.79362 -22.83083 -21.72638 -21.17144 -19.16793 -18.32726 -17.78200 -16.90203 -16.49200 -16.14583 -15.75901 -15.28411 -14.84014 -14.77670 -14.30773 -14.11636 -14.04531 -13.91375 -13.59387 -13.55009 -13.28596 -13.06699 -12.88038 -12.80030 -12.43030 -12.34888 -12.24903 -12.14584 -11.97894 -11.94338 -11.80848 -11.64357 -11.51215 -11.33200 -11.24562 -10.54564 -9.18859 -9.10960 -8.87793 -8.09575 -6.27290 0.18995 0.82168 1.12294 1.33394 1.34770 1.43717 1.88001 2.37290 3.14625 3.51074 4.01377 4.12939 4.16104 4.24006 4.38028 4.42680 4.47279 4.57049 4.63127 4.68049 4.70275 4.83135 4.85978 4.90601 4.94838 4.97662 5.03050 5.08791 5.14049 5.19215 5.31509 5.31583 5.38731 5.42610 5.44307 5.52839 5.58705 5.62314 5.82922 5.84041 6.13916 6.33215 6.63848 6.93951 7.42063 8.91700 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011201 B = 0.007174 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.162597 B = 3901.966570 C = 5909.301016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.102 4.102 4 C 0.059 3.941 5 N -0.531 5.531 6 C 0.211 3.789 7 C -0.541 4.541 8 H 0.053 0.947 9 C 0.017 3.983 10 N -0.923 5.923 11 Si 0.944 3.056 12 H -0.276 1.276 13 H -0.284 1.284 14 H -0.269 1.269 15 C 0.125 3.875 16 C -0.101 4.101 17 C -0.132 4.132 18 C -0.199 4.199 19 C -0.076 4.076 20 S 0.092 5.908 21 C -0.169 4.169 22 C -0.074 4.074 23 H 0.060 0.940 24 H 0.040 0.960 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.031 0.969 30 H 0.021 0.979 31 H 0.078 0.922 32 H -0.004 1.004 33 H 0.007 0.993 34 H 0.261 0.739 35 H 0.023 0.977 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.293 -0.840 12.516 12.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.140 4.140 4 C -0.069 4.069 5 N -0.254 5.254 6 C 0.084 3.916 7 C -0.580 4.580 8 H 0.071 0.929 9 C -0.182 4.182 10 N -0.563 5.563 11 Si 0.770 3.230 12 H -0.202 1.202 13 H -0.209 1.209 14 H -0.194 1.194 15 C -0.005 4.005 16 C -0.113 4.113 17 C -0.162 4.162 18 C -0.315 4.315 19 C -0.134 4.134 20 S 0.355 5.645 21 C -0.287 4.287 22 C -0.133 4.133 23 H 0.079 0.921 24 H 0.059 0.941 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.049 0.951 30 H 0.039 0.961 31 H 0.096 0.904 32 H 0.014 0.986 33 H 0.025 0.975 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.104 0.896 37 H 0.128 0.872 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.002 0.812 13.682 13.852 hybrid contribution 0.800 -1.841 -3.146 3.732 sum 2.802 -1.029 10.537 10.951 Atomic orbital electron populations 1.21732 0.95098 1.02027 1.01571 1.21443 0.96476 0.95643 1.01887 1.21432 0.94593 0.97078 1.00863 1.22048 0.95771 0.89278 0.99788 1.62492 1.15916 1.17277 1.29668 1.19269 0.94149 0.93889 0.84315 1.21882 1.32423 1.09133 0.94611 0.92867 1.25659 0.96334 0.95693 1.00559 1.70076 1.44092 1.22967 1.19150 0.85772 0.79189 0.78717 0.79333 1.20197 1.20928 1.19354 1.20526 0.89390 0.91407 0.99172 1.18693 1.01076 0.98040 0.93487 1.20024 1.01780 0.94463 0.99903 1.24572 1.08388 0.98903 0.99671 1.20334 0.99016 0.96298 0.97782 1.83508 1.56240 1.12416 1.12289 1.24476 1.06634 0.96305 1.01284 1.20355 0.99248 1.01152 0.92511 0.92071 0.94080 0.91457 0.93298 0.90559 0.91570 0.95051 0.96055 0.90414 0.98605 0.97480 0.92994 0.95860 0.89568 0.87151 0.91297 0.89423 0.90640 0.89509 0.90750 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.91 71.98 0.71 -2.79 16 2 C -0.12 -3.18 5.93 30.59 0.18 -3.00 16 3 C -0.10 -3.48 5.27 30.59 0.16 -3.32 16 4 C 0.06 2.20 4.80 86.30 0.41 2.62 16 5 N -0.53 -22.35 4.49 -905.38 -4.06 -26.42 16 6 C 0.21 11.07 4.76 85.56 0.41 11.48 16 7 C -0.54 -29.78 7.34 25.60 0.19 -29.59 16 8 H 0.05 2.90 5.95 -2.91 -0.02 2.88 16 9 C 0.02 0.95 5.46 84.65 0.46 1.41 16 10 N -0.92 -55.29 13.29 21.45 0.28 -55.01 16 11 Si 0.94 44.34 29.54 68.60 2.03 46.36 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 15 C 0.13 4.88 4.29 85.56 0.37 5.25 16 16 C -0.10 -3.92 4.45 -20.92 -0.09 -4.01 16 17 C -0.13 -5.38 8.92 21.22 0.19 -5.19 16 18 C -0.20 -6.92 6.51 24.59 0.16 -6.76 16 19 C -0.08 -2.13 10.38 71.23 0.74 -1.39 16 20 S 0.09 2.77 23.31 -56.49 -1.32 1.46 16 21 C -0.17 -5.59 6.50 24.59 0.16 -5.43 16 22 C -0.07 -1.91 9.85 71.24 0.70 -1.21 16 23 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 24 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.07 2.12 8.14 -2.38 -0.02 2.11 16 29 H 0.03 1.29 6.74 -2.38 -0.02 1.27 16 30 H 0.02 0.90 6.13 -2.39 -0.01 0.89 16 31 H 0.08 2.41 7.81 -2.39 -0.02 2.40 16 32 H 0.00 -0.24 6.68 -2.38 -0.02 -0.25 16 33 H 0.01 0.41 6.51 -2.38 -0.02 0.40 16 34 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 35 H 0.02 1.02 6.56 -2.38 -0.02 1.01 16 36 H 0.09 2.83 7.50 -2.39 -0.02 2.81 16 37 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 38 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.08 2.23 7.36 -2.38 -0.02 2.21 16 Total: -1.00 -63.02 353.48 2.65 -60.37 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.96 Total: 15.16 kcal Atomic # 6 Polarization: -46.69 SS G_CDS: 4.75 Total: -41.93 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -3.78 Total: -81.43 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -1.32 Total: 1.46 kcal Total: -63.02 2.65 -60.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138567836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.600 kcal (2) G-P(sol) polarization free energy of solvation -63.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds