Wall clock time and date at job start Tue Mar 31 2020 05:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 C 1.53002 * 109.46722 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.46855 * 180.02562 * 4 3 2 6 6 C 1.33388 * 125.20204 * 90.00388 * 5 4 3 7 7 C 1.38429 * 114.92129 * 179.78942 * 6 5 4 8 8 C 1.33388 * 114.92004 * 0.43502 * 7 6 5 9 9 C 1.50696 * 125.20326 * 179.86117 * 8 7 6 10 10 N 1.46898 * 109.47394 * 95.57549 * 9 8 7 11 11 C 1.46900 * 111.00012 * 288.30765 * 10 9 8 12 12 C 1.53007 * 109.46986 * 297.41954 * 11 10 9 13 13 C 1.46903 * 111.00230 * 164.35441 * 10 9 8 14 14 C 1.50702 * 109.46985 * 189.99841 * 13 10 9 15 15 H 1.07993 * 120.00220 * 359.97438 * 14 13 10 16 16 C 1.37876 * 119.99499 * 179.97438 * 14 13 10 17 17 N 1.31516 * 120.00265 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99926 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47105 * 89.99883 * 18 16 14 20 20 H 1.48497 * 109.46980 * 210.00268 * 18 16 14 21 21 H 1.48497 * 109.46668 * 329.99976 * 18 16 14 22 22 S 1.75885 * 125.20525 * 270.02581 * 5 4 3 23 23 H 1.09002 * 109.46863 * 59.99714 * 1 2 3 24 24 H 1.08994 * 109.47398 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46821 * 300.00107 * 1 2 3 26 26 H 1.09002 * 109.46821 * 239.99893 * 2 1 3 27 27 H 1.09002 * 109.46863 * 120.00286 * 2 1 3 28 28 H 1.09002 * 109.46875 * 60.00332 * 3 2 1 29 29 H 1.08997 * 109.47096 * 299.99974 * 3 2 1 30 30 H 1.09002 * 109.47071 * 60.00579 * 4 3 2 31 31 H 1.08997 * 109.47417 * 299.99904 * 4 3 2 32 32 H 1.08000 * 122.53847 * 0.02562 * 6 5 4 33 33 H 1.07998 * 122.54026 * 180.26684 * 7 6 5 34 34 H 1.09001 * 109.47109 * 335.57069 * 9 8 7 35 35 H 1.09004 * 109.46944 * 215.57742 * 9 8 7 36 36 H 1.08994 * 109.47359 * 57.41406 * 11 10 9 37 37 H 1.08995 * 109.47684 * 177.42060 * 11 10 9 38 38 H 1.08995 * 109.47235 * 181.39645 * 12 11 10 39 39 H 1.09005 * 109.47159 * 301.39005 * 12 11 10 40 40 H 1.08993 * 109.47057 * 61.39028 * 12 11 10 41 41 H 1.08999 * 109.46689 * 309.99799 * 13 10 9 42 42 H 1.09000 * 109.47249 * 69.99841 * 13 10 9 43 43 H 0.97007 * 119.99820 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0724 2.8632 0.0013 6 6 4.3283 3.5878 1.0915 7 6 4.7868 4.8705 0.8451 8 6 4.8945 5.1906 -0.4453 9 6 5.3654 6.5209 -0.9741 10 7 6.8006 6.4468 -1.2781 11 6 7.5978 6.3933 -0.0454 12 6 7.3861 7.6800 0.7551 13 6 7.2178 7.5713 -2.1264 14 6 8.6228 7.3354 -2.6179 15 1 9.1529 6.4401 -2.3287 16 6 9.2313 8.2628 -3.4368 17 7 8.5856 9.3529 -3.7894 18 14 10.9726 7.9703 -4.0466 19 1 10.9287 7.2307 -5.3336 20 1 11.6521 9.2752 -4.2485 21 1 11.7212 7.1725 -3.0425 22 16 4.4104 3.8198 -1.4354 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9337 0.9285 -0.8892 31 1 3.9330 0.9287 0.8908 32 1 4.1920 3.2016 2.0909 33 1 5.0357 5.5607 1.6375 34 1 5.1922 7.2921 -0.2234 35 1 4.8139 6.7669 -1.8815 36 1 7.2848 5.5377 0.5529 37 1 8.6530 6.2928 -0.2991 38 1 7.9966 7.6511 1.6576 39 1 7.6758 8.5376 0.1479 40 1 6.3351 7.7680 1.0301 41 1 6.5435 7.6529 -2.9789 42 1 7.1854 8.4945 -1.5478 43 1 9.0139 10.0055 -4.3653 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138757595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:22 Heat of formation + Delta-G solvation = 9.700338 kcal Electronic energy + Delta-G solvation = -19424.695181 eV Core-core repulsion = 16595.627392 eV Total energy + Delta-G solvation = -2829.067789 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.34394 -37.04918 -35.61620 -32.71100 -31.86095 -29.87594 -28.80410 -26.62035 -25.12015 -23.58556 -22.78559 -22.19475 -21.25296 -19.57549 -18.43283 -16.65534 -16.16338 -15.53264 -15.09959 -15.00373 -14.85270 -14.30642 -14.08796 -13.55099 -13.28557 -13.07121 -12.82877 -12.67166 -12.27174 -12.00703 -11.93430 -11.71291 -11.45150 -11.35683 -11.23881 -11.13164 -10.98650 -10.79291 -10.71096 -10.66546 -10.53947 -10.31783 -10.01595 -9.77606 -9.22162 -8.43119 -8.18065 -8.13370 -7.19433 -6.02000 -4.02660 1.28418 1.92665 2.37094 2.99738 3.32912 3.38798 3.42597 4.43927 4.55979 4.71682 4.84796 5.03720 5.07595 5.12882 5.30742 5.35755 5.45759 5.47009 5.56421 5.57797 5.66200 5.74309 5.79067 5.87039 5.88491 5.91196 6.02599 6.05395 6.09729 6.14032 6.18513 6.43857 6.48653 6.56982 6.69175 6.80817 6.92698 7.30118 7.41585 7.80696 8.08679 8.20978 8.54615 9.04755 9.61225 11.08762 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029713 B = 0.003242 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.108591 B = 8633.634676 C = 9024.341615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.044 4.044 5 C -0.197 4.197 6 C -0.133 4.133 7 C -0.152 4.152 8 C -0.137 4.137 9 C 0.111 3.889 10 N -0.529 5.529 11 C 0.060 3.940 12 C -0.189 4.189 13 C 0.189 3.811 14 C -0.503 4.503 15 H 0.063 0.937 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.288 1.288 21 H -0.274 1.274 22 S 0.116 5.884 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.069 0.931 40 H 0.043 0.957 41 H 0.028 0.972 42 H 0.001 0.999 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.025 -14.129 9.712 21.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.084 4.084 5 C -0.314 4.314 6 C -0.164 4.164 7 C -0.182 4.182 8 C -0.255 4.255 9 C -0.018 4.018 10 N -0.253 5.253 11 C -0.068 4.068 12 C -0.248 4.248 13 C 0.064 3.936 14 C -0.542 4.542 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.214 1.214 21 H -0.199 1.199 22 S 0.381 5.619 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.046 0.954 42 H 0.018 0.982 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.999 -14.643 7.757 21.060 hybrid contribution 0.973 1.072 1.612 2.166 sum -12.026 -13.571 9.369 20.410 Atomic orbital electron populations 1.21774 0.95906 1.01451 1.01902 1.21549 0.95871 0.96854 1.02013 1.21649 0.94357 0.96637 1.02645 1.20088 0.95264 0.90189 1.02818 1.24417 1.09840 1.00689 0.96483 1.19926 1.03468 0.94277 0.98693 1.19994 1.05133 0.97163 0.95926 1.24581 1.05040 1.00012 0.95897 1.20607 0.92054 0.89547 0.99635 1.62346 0.99562 1.47530 1.15824 1.21972 0.99656 0.95206 0.89981 1.22390 1.00204 1.01712 1.00462 1.19817 0.96452 0.86254 0.91041 1.21133 0.98499 1.05430 1.29130 0.91916 1.24972 0.98143 0.95120 0.96365 1.69958 1.37454 1.10057 1.36447 0.86514 0.84413 0.77344 0.79247 1.20649 1.21368 1.19885 1.84299 1.63482 1.05167 1.08947 0.92693 0.92885 0.92775 0.91974 0.92039 0.91729 0.91728 0.91061 0.90536 0.85277 0.85065 0.93186 0.90534 0.92741 0.90136 0.93388 0.91208 0.93779 0.95436 0.98166 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.13 -0.92 5.93 -26.73 -0.16 -1.08 16 3 C -0.11 -1.01 5.20 -26.73 -0.14 -1.15 16 4 C -0.04 -0.44 5.71 -27.88 -0.16 -0.60 16 5 C -0.20 -2.52 5.76 -36.00 -0.21 -2.73 16 6 C -0.13 -1.73 10.05 -41.21 -0.41 -2.14 16 7 C -0.15 -2.21 9.06 -41.21 -0.37 -2.58 16 8 C -0.14 -2.24 5.46 -36.01 -0.20 -2.43 16 9 C 0.11 2.05 5.33 -4.98 -0.03 2.02 16 10 N -0.53 -11.41 4.65 -237.52 -1.10 -12.51 16 11 C 0.06 1.18 5.73 -3.82 -0.02 1.16 16 12 C -0.19 -3.39 9.28 37.16 0.34 -3.04 16 13 C 0.19 4.85 4.50 -4.97 -0.02 4.83 16 14 C -0.50 -14.06 8.50 -34.44 -0.29 -14.35 16 15 H 0.06 1.75 7.11 -52.49 -0.37 1.38 16 16 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 18 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 S 0.12 1.75 23.31 -107.50 -2.51 -0.75 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.05 0.88 5.89 -51.93 -0.31 0.58 16 35 H 0.08 1.43 7.82 -51.93 -0.41 1.02 16 36 H 0.05 0.98 6.65 -51.93 -0.35 0.64 16 37 H 0.08 1.73 6.82 -51.93 -0.35 1.37 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.44 6.24 -51.93 -0.32 1.12 16 40 H 0.04 0.72 6.30 -51.93 -0.33 0.40 16 41 H 0.03 0.76 7.86 -51.93 -0.41 0.35 16 42 H 0.00 0.02 6.01 -51.93 -0.31 -0.29 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 354.52 15.07 5.34 5.34 Total: -1.00 -29.16 354.52 -11.31 -40.48 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -7.36 Total: -2.10 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -1.40 Total: -21.31 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: -0.37 Total: -38.37 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.51 Total: -0.75 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.16 -11.31 -40.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138757595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.177 kcal (2) G-P(sol) polarization free energy of solvation -29.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds