Wall clock time and date at job start Tue Mar 31 2020 05:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 C 1.53002 * 109.46722 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.46855 * 180.02562 * 4 3 2 6 6 C 1.33388 * 125.20204 * 90.00388 * 5 4 3 7 7 C 1.38429 * 114.92129 * 179.78942 * 6 5 4 8 8 C 1.33388 * 114.92004 * 0.43502 * 7 6 5 9 9 C 1.50696 * 125.20326 * 179.86117 * 8 7 6 10 10 N 1.46898 * 109.47394 * 95.57549 * 9 8 7 11 11 C 1.46900 * 111.00012 * 288.30765 * 10 9 8 12 12 C 1.53007 * 109.46986 * 297.41954 * 11 10 9 13 13 C 1.46903 * 111.00230 * 164.35441 * 10 9 8 14 14 C 1.50702 * 109.46985 * 189.99841 * 13 10 9 15 15 H 1.07993 * 120.00220 * 359.97438 * 14 13 10 16 16 C 1.37876 * 119.99499 * 179.97438 * 14 13 10 17 17 N 1.31516 * 120.00265 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99926 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47105 * 89.99883 * 18 16 14 20 20 H 1.48497 * 109.46980 * 210.00268 * 18 16 14 21 21 H 1.48497 * 109.46668 * 329.99976 * 18 16 14 22 22 S 1.75885 * 125.20525 * 270.02581 * 5 4 3 23 23 H 1.09002 * 109.46863 * 59.99714 * 1 2 3 24 24 H 1.08994 * 109.47398 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46821 * 300.00107 * 1 2 3 26 26 H 1.09002 * 109.46821 * 239.99893 * 2 1 3 27 27 H 1.09002 * 109.46863 * 120.00286 * 2 1 3 28 28 H 1.09002 * 109.46875 * 60.00332 * 3 2 1 29 29 H 1.08997 * 109.47096 * 299.99974 * 3 2 1 30 30 H 1.09002 * 109.47071 * 60.00579 * 4 3 2 31 31 H 1.08997 * 109.47417 * 299.99904 * 4 3 2 32 32 H 1.08000 * 122.53847 * 0.02562 * 6 5 4 33 33 H 1.07998 * 122.54026 * 180.26684 * 7 6 5 34 34 H 1.09001 * 109.47109 * 335.57069 * 9 8 7 35 35 H 1.09004 * 109.46944 * 215.57742 * 9 8 7 36 36 H 1.08994 * 109.47359 * 57.41406 * 11 10 9 37 37 H 1.08995 * 109.47684 * 177.42060 * 11 10 9 38 38 H 1.08995 * 109.47235 * 181.39645 * 12 11 10 39 39 H 1.09005 * 109.47159 * 301.39005 * 12 11 10 40 40 H 1.08993 * 109.47057 * 61.39028 * 12 11 10 41 41 H 1.08999 * 109.46689 * 309.99799 * 13 10 9 42 42 H 1.09000 * 109.47249 * 69.99841 * 13 10 9 43 43 H 0.97007 * 119.99820 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0724 2.8632 0.0013 6 6 4.3283 3.5878 1.0915 7 6 4.7868 4.8705 0.8451 8 6 4.8945 5.1906 -0.4453 9 6 5.3654 6.5209 -0.9741 10 7 6.8006 6.4468 -1.2781 11 6 7.5978 6.3933 -0.0454 12 6 7.3861 7.6800 0.7551 13 6 7.2178 7.5713 -2.1264 14 6 8.6228 7.3354 -2.6179 15 1 9.1529 6.4401 -2.3287 16 6 9.2313 8.2628 -3.4368 17 7 8.5856 9.3529 -3.7894 18 14 10.9726 7.9703 -4.0466 19 1 10.9287 7.2307 -5.3336 20 1 11.6521 9.2752 -4.2485 21 1 11.7212 7.1725 -3.0425 22 16 4.4104 3.8198 -1.4354 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9337 0.9285 -0.8892 31 1 3.9330 0.9287 0.8908 32 1 4.1920 3.2016 2.0909 33 1 5.0357 5.5607 1.6375 34 1 5.1922 7.2921 -0.2234 35 1 4.8139 6.7669 -1.8815 36 1 7.2848 5.5377 0.5529 37 1 8.6530 6.2928 -0.2991 38 1 7.9966 7.6511 1.6576 39 1 7.6758 8.5376 0.1479 40 1 6.3351 7.7680 1.0301 41 1 6.5435 7.6529 -2.9789 42 1 7.1854 8.4945 -1.5478 43 1 9.0139 10.0055 -4.3653 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138757595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:22 Heat of formation + Delta-G solvation = -5.061517 kcal Electronic energy + Delta-G solvation = -19425.335304 eV Core-core repulsion = 16595.627392 eV Total energy + Delta-G solvation = -2829.707911 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.66701 -38.37622 -36.45858 -34.76309 -32.89508 -31.26687 -30.34878 -28.13236 -26.40913 -25.09274 -24.28362 -23.24552 -21.90028 -21.22125 -19.57697 -18.37929 -17.74768 -16.85670 -16.55138 -16.27193 -16.06963 -15.93156 -14.96502 -14.74097 -14.68558 -14.17980 -14.06121 -13.79854 -13.64166 -13.37296 -13.13844 -13.05863 -12.91556 -12.68160 -12.63758 -12.44876 -12.41034 -12.00671 -11.96806 -11.83979 -11.73080 -11.51076 -11.48187 -11.32880 -11.27631 -10.60013 -9.34094 -9.30305 -8.91927 -8.19351 -6.28461 0.15312 0.79068 1.24671 1.40108 1.41452 1.52285 1.89904 2.40576 3.13037 3.43292 3.78987 3.99180 4.08285 4.17568 4.18770 4.29777 4.36239 4.46746 4.48708 4.52484 4.67120 4.69404 4.81069 4.82370 4.88423 4.94091 4.98532 5.00651 5.05571 5.15999 5.20063 5.31204 5.32923 5.34795 5.44777 5.45732 5.49826 5.51818 5.66864 5.73552 6.06322 6.36837 6.62463 6.87172 7.40498 8.91218 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029713 B = 0.003242 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.108591 B = 8633.634676 C = 9024.341615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.110 4.110 4 C -0.045 4.045 5 C -0.176 4.176 6 C -0.141 4.141 7 C -0.136 4.136 8 C -0.169 4.169 9 C 0.118 3.882 10 N -0.539 5.539 11 C 0.064 3.936 12 C -0.178 4.178 13 C 0.206 3.794 14 C -0.518 4.518 15 H 0.059 0.941 16 C 0.003 3.997 17 N -0.934 5.934 18 Si 0.965 3.035 19 H -0.275 1.275 20 H -0.281 1.281 21 H -0.265 1.265 22 S 0.078 5.922 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.160 0.840 33 H 0.145 0.855 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.035 0.965 40 H 0.060 0.940 41 H -0.004 1.004 42 H -0.018 1.018 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.006 -16.116 11.586 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.148 4.148 4 C -0.084 4.084 5 C -0.294 4.294 6 C -0.171 4.171 7 C -0.167 4.167 8 C -0.286 4.286 9 C -0.011 4.011 10 N -0.263 5.263 11 C -0.064 4.064 12 C -0.237 4.237 13 C 0.080 3.920 14 C -0.556 4.556 15 H 0.077 0.923 16 C -0.195 4.195 17 N -0.574 5.574 18 Si 0.790 3.210 19 H -0.201 1.201 20 H -0.207 1.207 21 H -0.190 1.190 22 S 0.342 5.658 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.177 0.823 33 H 0.163 0.837 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.015 0.985 42 H 0.000 1.000 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.991 -16.642 9.645 23.211 hybrid contribution 0.875 1.616 1.088 2.135 sum -12.116 -15.026 10.733 22.086 Atomic orbital electron populations 1.21783 0.95604 1.01990 1.01767 1.21528 0.96125 0.95783 1.02561 1.21599 0.93438 0.97635 1.02141 1.20228 0.95952 0.88343 1.03861 1.24798 1.08152 1.01530 0.94926 1.20200 1.03260 0.93544 1.00068 1.20260 1.03161 0.97968 0.95298 1.24289 1.08105 0.99444 0.96796 1.20475 0.89789 0.91513 0.99323 1.62223 1.01781 1.45428 1.16864 1.21941 0.98061 0.96913 0.89514 1.22265 1.01716 0.99175 1.00545 1.19431 0.95043 0.87043 0.90503 1.21414 0.99548 1.05307 1.29356 0.92312 1.25851 1.02441 0.94769 0.96447 1.70080 1.39310 1.10947 1.37098 0.85440 0.79249 0.77500 0.78785 1.20067 1.20694 1.18957 1.84423 1.64295 1.06012 1.11023 0.93185 0.92038 0.92604 0.91899 0.91017 0.91570 0.92945 0.90925 0.88506 0.82259 0.83734 0.92461 0.92057 0.90556 0.92401 0.90773 0.94589 0.92147 0.98547 1.00019 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.08 16 2 C -0.12 -1.50 5.93 30.60 0.18 -1.32 16 3 C -0.11 -1.69 5.20 30.59 0.16 -1.53 16 4 C -0.04 -0.76 5.71 29.85 0.17 -0.59 16 5 C -0.18 -4.14 5.76 24.59 0.14 -4.00 16 6 C -0.14 -3.22 10.05 21.22 0.21 -3.01 16 7 C -0.14 -3.64 9.06 21.22 0.19 -3.45 16 8 C -0.17 -5.41 5.46 24.59 0.13 -5.27 16 9 C 0.12 4.43 5.33 85.56 0.46 4.89 16 10 N -0.54 -23.82 4.65 -905.37 -4.21 -28.03 16 11 C 0.06 2.48 5.73 86.31 0.49 2.98 16 12 C -0.18 -6.27 9.28 71.98 0.67 -5.60 16 13 C 0.21 11.05 4.50 85.56 0.38 11.43 16 14 C -0.52 -29.73 8.50 25.60 0.22 -29.51 16 15 H 0.06 3.35 7.11 -2.91 -0.02 3.33 16 16 C 0.00 0.16 5.46 84.65 0.46 0.62 16 17 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 18 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 19 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 22 S 0.08 2.33 23.31 -56.49 -1.32 1.01 16 23 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 33 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 34 H 0.06 2.02 5.89 -2.39 -0.01 2.01 16 35 H 0.06 2.42 7.82 -2.39 -0.02 2.40 16 36 H 0.08 2.63 6.65 -2.39 -0.02 2.62 16 37 H 0.06 2.50 6.82 -2.39 -0.02 2.48 16 38 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.04 1.50 6.24 -2.38 -0.01 1.49 16 40 H 0.06 1.90 6.30 -2.39 -0.02 1.89 16 41 H 0.00 -0.21 7.86 -2.39 -0.02 -0.23 16 42 H -0.02 -1.00 6.01 -2.39 -0.01 -1.02 16 43 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -63.86 354.52 2.33 -61.52 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.96 Total: 10.26 kcal Atomic # 6 Polarization: -40.04 SS G_CDS: 4.59 Total: -35.45 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -3.92 Total: -84.33 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -1.32 Total: 1.01 kcal Total: -63.86 2.33 -61.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138757595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.462 kcal (2) G-P(sol) polarization free energy of solvation -63.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds