Wall clock time and date at job start Tue Mar 31 2020 05:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47359 * 2 1 4 4 C 1.53000 * 109.47465 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.47344 * 185.16958 * 4 3 2 6 6 C 1.46899 * 111.00150 * 288.44666 * 5 4 3 7 7 C 1.50699 * 109.46814 * 299.34353 * 6 5 4 8 8 H 1.08003 * 120.00346 * 3.19057 * 7 6 5 9 9 C 1.37885 * 119.99952 * 183.19169 * 7 6 5 10 10 N 1.31506 * 119.99693 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00046 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47395 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47178 * 120.00207 * 11 9 7 14 14 H 1.48498 * 109.47496 * 240.00391 * 11 9 7 15 15 C 1.46900 * 110.99785 * 164.48881 * 5 4 3 16 16 C 1.50700 * 109.46854 * 201.19321 * 15 5 4 17 17 C 1.38172 * 119.98433 * 95.14960 * 16 15 5 18 18 C 1.38690 * 119.96849 * 179.76797 * 17 16 15 19 19 O 1.35943 * 120.02829 * 180.24940 * 18 17 16 20 20 C 1.38727 * 119.93621 * 0.50618 * 18 17 16 21 21 C 1.38126 * 119.97272 * 359.74397 * 20 18 17 22 22 C 1.38432 * 119.98445 * 275.42296 * 16 15 5 23 23 F 1.35100 * 119.97310 * 0.02562 * 22 16 15 24 24 H 1.08993 * 109.47493 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47485 * 300.00531 * 1 2 3 26 26 H 1.09000 * 109.46822 * 60.00089 * 1 2 3 27 27 H 1.08999 * 109.47485 * 239.99469 * 2 1 3 28 28 H 1.09000 * 109.46822 * 119.99911 * 2 1 3 29 29 H 1.09005 * 109.46931 * 59.99620 * 3 2 1 30 30 H 1.09000 * 109.47081 * 299.99753 * 3 2 1 31 31 H 1.09004 * 109.46908 * 65.17430 * 4 3 2 32 32 H 1.08997 * 109.46992 * 305.17501 * 4 3 2 33 33 H 1.08993 * 109.47014 * 59.33919 * 6 5 4 34 34 H 1.08991 * 109.47065 * 179.34306 * 6 5 4 35 35 H 0.97002 * 119.99807 * 179.97438 * 10 9 7 36 36 H 1.08994 * 109.47430 * 321.19599 * 15 5 4 37 37 H 1.08997 * 109.46773 * 81.19565 * 15 5 4 38 38 H 1.08001 * 120.01455 * 359.97438 * 17 16 15 39 39 H 0.96694 * 114.00294 * 270.25336 * 19 18 17 40 40 H 1.07999 * 120.01294 * 179.72882 * 20 18 17 41 41 H 1.08002 * 119.98659 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0596 2.8219 0.1254 6 6 3.8265 3.5773 -1.1127 7 6 4.5637 2.9180 -2.2497 8 1 5.1048 1.9985 -2.0815 9 6 4.5475 3.4885 -3.5048 10 7 3.8883 4.6079 -3.7097 11 14 5.4618 2.6716 -4.9141 12 1 6.1183 1.4323 -4.4259 13 1 4.5023 2.3302 -5.9948 14 1 6.4913 3.6026 -5.4420 15 6 5.4809 2.8444 0.4963 16 6 5.8181 4.1778 1.1123 17 6 5.7999 4.3284 2.4857 18 6 6.1150 5.5544 3.0524 19 8 6.1024 5.7025 4.4037 20 6 6.4379 6.6306 2.2389 21 6 6.4503 6.4787 0.8660 22 6 6.1405 5.2526 0.3017 23 9 6.1521 5.1057 -1.0412 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 1.0109 -0.9319 32 1 3.9330 0.8506 0.8409 33 1 2.7592 3.5938 -1.3327 34 1 4.1878 4.5981 -0.9889 35 1 3.8772 5.0095 -4.5926 36 1 5.6813 2.0507 1.2159 37 1 6.0910 2.6906 -0.3937 38 1 5.5437 3.4909 3.1176 39 1 5.2467 5.9760 4.7614 40 1 6.6792 7.5870 2.6787 41 1 6.7012 7.3165 0.2324 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140047428.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:46 Heat of formation + Delta-G solvation = -71.227705 kcal Electronic energy + Delta-G solvation = -22631.651228 eV Core-core repulsion = 19232.860960 eV Total energy + Delta-G solvation = -3398.790269 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.05742 -39.38861 -37.40483 -36.13430 -34.22827 -32.47173 -31.29723 -29.08994 -28.22129 -26.89758 -24.71164 -23.29670 -22.36284 -21.62764 -20.51207 -19.56561 -17.80990 -16.91606 -16.41913 -16.25458 -15.39050 -15.22560 -14.87593 -14.60161 -14.12771 -13.93181 -13.61957 -13.50482 -13.15491 -12.99999 -12.61832 -12.22767 -12.18284 -12.03300 -11.50229 -11.36429 -11.12955 -10.93193 -10.81666 -10.73864 -10.54550 -10.47940 -10.19837 -9.99783 -9.93823 -9.82320 -9.49916 -8.68657 -8.33660 -8.00991 -7.17246 -5.95733 -4.02069 1.42091 1.49541 3.29400 3.37813 3.40069 3.72050 4.37662 4.45948 4.80408 4.94321 5.06038 5.21443 5.35565 5.36594 5.41788 5.53280 5.59330 5.66707 5.82460 5.89865 6.10358 6.12631 6.13753 6.20062 6.24063 6.35866 6.44666 6.46900 6.51743 6.54635 6.56679 6.81056 6.91508 6.96073 7.13080 7.32201 7.60559 7.76278 7.96781 8.07749 8.28640 8.34963 9.05194 9.63001 11.10196 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011442 B = 0.006962 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.579450 B = 4020.663994 C = 5986.462265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.109 4.109 4 C 0.060 3.940 5 N -0.538 5.538 6 C 0.178 3.822 7 C -0.538 4.538 8 H 0.054 0.946 9 C 0.071 3.929 10 N -0.887 5.887 11 Si 0.881 3.119 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.092 3.908 16 C -0.079 4.079 17 C -0.104 4.104 18 C 0.076 3.924 19 O -0.500 6.500 20 C -0.125 4.125 21 C -0.150 4.150 22 C 0.115 3.885 23 F -0.102 7.102 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.027 0.973 34 H 0.043 0.957 35 H 0.259 0.741 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.131 0.869 39 H 0.385 0.615 40 H 0.129 0.871 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.417 -0.868 11.921 11.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.147 4.147 4 C -0.068 4.068 5 N -0.261 5.261 6 C 0.053 3.947 7 C -0.577 4.577 8 H 0.072 0.928 9 C -0.132 4.132 10 N -0.525 5.525 11 Si 0.709 3.291 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.210 1.210 15 C -0.036 4.036 16 C -0.081 4.081 17 C -0.123 4.123 18 C 0.032 3.968 19 O -0.310 6.310 20 C -0.144 4.144 21 C -0.169 4.169 22 C 0.095 3.905 23 F -0.080 7.080 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.149 0.851 39 H 0.240 0.760 40 H 0.147 0.853 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.690 -0.692 12.051 12.090 hybrid contribution 0.437 -0.545 -1.789 1.921 sum 1.127 -1.237 10.261 10.397 Atomic orbital electron populations 1.21748 0.96423 1.00748 1.01741 1.21481 0.95327 0.97832 1.01321 1.21502 0.95605 0.95220 1.02364 1.21980 0.94854 0.90260 0.99716 1.62583 1.13615 1.12885 1.37048 1.19976 0.96852 0.94374 0.83501 1.21600 1.32355 1.08875 0.94879 0.92812 1.24846 0.95182 0.94682 0.98444 1.69943 1.41837 1.18445 1.22308 0.86720 0.79869 0.79564 0.82935 1.19986 1.21119 1.21033 1.20882 0.92231 0.91378 0.99127 1.19897 0.99143 0.96337 0.92707 1.21102 0.99757 0.97519 0.93886 1.18345 1.02796 0.92974 0.82706 1.84825 1.37586 1.90894 1.17680 1.21091 1.01988 0.98633 0.92649 1.21019 1.03771 0.96839 0.95243 1.17746 1.00012 0.93918 0.78859 1.91727 1.92846 1.95969 1.27482 0.93453 0.93049 0.92732 0.92282 0.92764 0.92354 0.91393 0.93402 0.93491 0.95475 0.93940 0.93101 0.91808 0.91631 0.85096 0.75981 0.85282 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.15 0.37 -1.51 16 2 C -0.12 -1.73 5.93 -26.73 -0.16 -1.89 16 3 C -0.11 -1.88 5.15 -26.73 -0.14 -2.02 16 4 C 0.06 1.13 4.79 -3.82 -0.02 1.11 16 5 N -0.54 -11.24 4.58 -237.53 -1.09 -12.33 16 6 C 0.18 4.48 4.44 -4.98 -0.02 4.46 16 7 C -0.54 -14.42 6.49 -34.44 -0.22 -14.64 16 8 H 0.05 1.45 6.08 -52.48 -0.32 1.13 16 9 C 0.07 1.98 5.46 -17.82 -0.10 1.88 16 10 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 11 Si 0.88 21.54 29.54 -169.99 -5.02 16.52 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 C 0.09 1.77 4.85 -4.98 -0.02 1.75 16 16 C -0.08 -1.44 5.27 -104.57 -0.55 -1.99 16 17 C -0.10 -1.60 9.62 -39.44 -0.38 -1.98 16 18 C 0.08 1.08 6.70 -39.23 -0.26 0.82 16 19 O -0.50 -6.01 13.50 -19.56 -0.26 -6.27 16 20 C -0.12 -1.74 9.98 -39.44 -0.39 -2.13 16 21 C -0.15 -2.40 10.02 -39.54 -0.40 -2.79 16 22 C 0.11 2.21 6.35 -39.42 -0.25 1.96 16 23 F -0.10 -2.38 13.64 2.25 0.03 -2.35 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 1.35 6.95 -51.93 -0.36 0.99 16 31 H 0.05 1.01 6.16 -51.93 -0.32 0.69 16 32 H 0.05 0.78 7.68 -51.93 -0.40 0.38 16 33 H 0.03 0.74 6.77 -51.93 -0.35 0.39 16 34 H 0.04 1.15 5.07 -51.93 -0.26 0.89 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.06 1.06 7.53 -51.93 -0.39 0.67 16 37 H 0.07 1.43 6.09 -51.93 -0.32 1.12 16 38 H 0.13 1.81 8.06 -52.49 -0.42 1.38 16 39 H 0.39 2.81 9.06 45.56 0.41 3.22 16 40 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 41 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 333.57 15.07 5.03 5.03 Total: -1.00 -30.34 333.57 -8.37 -38.72 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.25 Total: 2.79 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -2.55 Total: -16.97 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: -0.35 Total: -37.46 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.26 Total: -6.27 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.03 Total: -2.35 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.34 -8.37 -38.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140047428.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.509 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds