Wall clock time and date at job start Tue Mar 31 2020 05:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47359 * 2 1 4 4 C 1.53000 * 109.47465 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.47344 * 185.16958 * 4 3 2 6 6 C 1.46899 * 111.00150 * 288.44666 * 5 4 3 7 7 C 1.50699 * 109.46814 * 299.34353 * 6 5 4 8 8 H 1.08003 * 120.00346 * 3.19057 * 7 6 5 9 9 C 1.37885 * 119.99952 * 183.19169 * 7 6 5 10 10 N 1.31506 * 119.99693 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00046 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47395 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47178 * 120.00207 * 11 9 7 14 14 H 1.48498 * 109.47496 * 240.00391 * 11 9 7 15 15 C 1.46900 * 110.99785 * 164.48881 * 5 4 3 16 16 C 1.50700 * 109.46854 * 201.19321 * 15 5 4 17 17 C 1.38172 * 119.98433 * 95.14960 * 16 15 5 18 18 C 1.38690 * 119.96849 * 179.76797 * 17 16 15 19 19 O 1.35943 * 120.02829 * 180.24940 * 18 17 16 20 20 C 1.38727 * 119.93621 * 0.50618 * 18 17 16 21 21 C 1.38126 * 119.97272 * 359.74397 * 20 18 17 22 22 C 1.38432 * 119.98445 * 275.42296 * 16 15 5 23 23 F 1.35100 * 119.97310 * 0.02562 * 22 16 15 24 24 H 1.08993 * 109.47493 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47485 * 300.00531 * 1 2 3 26 26 H 1.09000 * 109.46822 * 60.00089 * 1 2 3 27 27 H 1.08999 * 109.47485 * 239.99469 * 2 1 3 28 28 H 1.09000 * 109.46822 * 119.99911 * 2 1 3 29 29 H 1.09005 * 109.46931 * 59.99620 * 3 2 1 30 30 H 1.09000 * 109.47081 * 299.99753 * 3 2 1 31 31 H 1.09004 * 109.46908 * 65.17430 * 4 3 2 32 32 H 1.08997 * 109.46992 * 305.17501 * 4 3 2 33 33 H 1.08993 * 109.47014 * 59.33919 * 6 5 4 34 34 H 1.08991 * 109.47065 * 179.34306 * 6 5 4 35 35 H 0.97002 * 119.99807 * 179.97438 * 10 9 7 36 36 H 1.08994 * 109.47430 * 321.19599 * 15 5 4 37 37 H 1.08997 * 109.46773 * 81.19565 * 15 5 4 38 38 H 1.08001 * 120.01455 * 359.97438 * 17 16 15 39 39 H 0.96694 * 114.00294 * 270.25336 * 19 18 17 40 40 H 1.07999 * 120.01294 * 179.72882 * 20 18 17 41 41 H 1.08002 * 119.98659 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0596 2.8219 0.1254 6 6 3.8265 3.5773 -1.1127 7 6 4.5637 2.9180 -2.2497 8 1 5.1048 1.9985 -2.0815 9 6 4.5475 3.4885 -3.5048 10 7 3.8883 4.6079 -3.7097 11 14 5.4618 2.6716 -4.9141 12 1 6.1183 1.4323 -4.4259 13 1 4.5023 2.3302 -5.9948 14 1 6.4913 3.6026 -5.4420 15 6 5.4809 2.8444 0.4963 16 6 5.8181 4.1778 1.1123 17 6 5.7999 4.3284 2.4857 18 6 6.1150 5.5544 3.0524 19 8 6.1024 5.7025 4.4037 20 6 6.4379 6.6306 2.2389 21 6 6.4503 6.4787 0.8660 22 6 6.1405 5.2526 0.3017 23 9 6.1521 5.1057 -1.0412 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 1.0109 -0.9319 32 1 3.9330 0.8506 0.8409 33 1 2.7592 3.5938 -1.3327 34 1 4.1878 4.5981 -0.9889 35 1 3.8772 5.0095 -4.5926 36 1 5.6813 2.0507 1.2159 37 1 6.0910 2.6906 -0.3937 38 1 5.5437 3.4909 3.1176 39 1 5.2467 5.9760 4.7614 40 1 6.6792 7.5870 2.6787 41 1 6.7012 7.3165 0.2324 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140047428.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:46 Heat of formation + Delta-G solvation = -91.281401 kcal Electronic energy + Delta-G solvation = -22632.520822 eV Core-core repulsion = 19232.860960 eV Total energy + Delta-G solvation = -3399.659862 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.62481 -40.58889 -38.93998 -37.30675 -35.58063 -34.47353 -32.65520 -30.32266 -29.73123 -28.64351 -26.30379 -25.00980 -23.61353 -22.89287 -21.78976 -21.27477 -18.99500 -18.42819 -18.18899 -17.67270 -17.02842 -16.74247 -16.24481 -16.11544 -15.73103 -15.29246 -15.17730 -14.87435 -14.47607 -14.30882 -14.19766 -13.77238 -13.53458 -13.34224 -13.07171 -12.80364 -12.76371 -12.69988 -12.42043 -12.12685 -12.01744 -11.95237 -11.81469 -11.66591 -11.48216 -11.28771 -11.25571 -10.50778 -9.92542 -9.31473 -8.97083 -8.08167 -6.22284 0.17564 0.27071 1.32582 1.34766 1.44158 2.39406 2.50430 3.19055 3.30843 3.45962 3.53661 3.81249 3.94857 4.11035 4.21923 4.27874 4.35653 4.41187 4.52545 4.56509 4.77655 4.84403 4.92459 4.98329 5.01346 5.05750 5.13239 5.17241 5.23947 5.31302 5.35949 5.40045 5.43586 5.46505 5.52439 5.57521 5.84099 5.89154 6.13105 6.29847 6.56815 6.91115 6.95113 7.45829 8.95451 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011442 B = 0.006962 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.579450 B = 4020.663994 C = 5986.462265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.102 4.102 4 C 0.059 3.941 5 N -0.535 5.535 6 C 0.198 3.802 7 C -0.533 4.533 8 H 0.049 0.951 9 C 0.020 3.980 10 N -0.921 5.921 11 Si 0.940 3.060 12 H -0.269 1.269 13 H -0.279 1.279 14 H -0.283 1.283 15 C 0.095 3.905 16 C -0.095 4.095 17 C -0.103 4.103 18 C 0.094 3.906 19 O -0.499 6.499 20 C -0.116 4.116 21 C -0.149 4.149 22 C 0.069 3.931 23 F -0.139 7.139 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.041 0.959 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.030 0.970 31 H 0.021 0.979 32 H 0.079 0.921 33 H -0.004 1.004 34 H 0.021 0.979 35 H 0.260 0.740 36 H 0.094 0.906 37 H 0.032 0.968 38 H 0.151 0.849 39 H 0.411 0.589 40 H 0.163 0.837 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.747 -1.538 14.515 14.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.140 4.140 4 C -0.068 4.068 5 N -0.257 5.257 6 C 0.072 3.928 7 C -0.572 4.572 8 H 0.067 0.933 9 C -0.179 4.179 10 N -0.562 5.562 11 Si 0.767 3.233 12 H -0.193 1.193 13 H -0.205 1.205 14 H -0.209 1.209 15 C -0.033 4.033 16 C -0.097 4.097 17 C -0.122 4.122 18 C 0.049 3.951 19 O -0.312 6.312 20 C -0.134 4.134 21 C -0.168 4.168 22 C 0.049 3.951 23 F -0.117 7.117 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.098 0.902 33 H 0.014 0.986 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.050 0.950 38 H 0.169 0.831 39 H 0.270 0.730 40 H 0.181 0.819 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.007 -1.373 14.673 14.771 hybrid contribution 0.349 -0.291 -2.398 2.441 sum 1.355 -1.664 12.274 12.461 Atomic orbital electron populations 1.21731 0.95068 1.02077 1.01568 1.21445 0.96512 0.95438 1.02003 1.21432 0.94505 0.97246 1.00794 1.22085 0.95882 0.89222 0.99651 1.62538 1.15074 1.13762 1.34372 1.19536 0.94321 0.93946 0.85015 1.21780 1.31585 1.08381 0.95496 0.93270 1.25580 0.96135 0.95282 1.00945 1.70059 1.43435 1.19855 1.22815 0.85779 0.78730 0.78740 0.80090 1.19320 1.20478 1.20935 1.20876 0.90298 0.93508 0.98589 1.19868 1.00490 0.95449 0.93901 1.21267 0.99355 0.98942 0.92656 1.18357 1.00642 0.92315 0.83741 1.84771 1.39600 1.90906 1.15972 1.21426 1.00405 1.00084 0.91506 1.21206 1.03162 0.95886 0.96551 1.18239 1.03172 0.95985 0.77661 1.91622 1.93606 1.96310 1.30163 0.91350 0.92176 0.94026 0.93052 0.90544 0.91736 0.95073 0.96056 0.90247 0.98614 0.96068 0.93136 0.88766 0.94990 0.83101 0.73008 0.81908 0.83749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.91 71.98 0.71 -2.76 16 2 C -0.12 -3.14 5.93 30.59 0.18 -2.96 16 3 C -0.10 -3.52 5.15 30.59 0.16 -3.36 16 4 C 0.06 2.24 4.79 86.30 0.41 2.65 16 5 N -0.53 -22.76 4.58 -905.40 -4.15 -26.91 16 6 C 0.20 10.49 4.44 85.56 0.38 10.87 16 7 C -0.53 -29.85 6.49 25.60 0.17 -29.68 16 8 H 0.05 2.75 6.08 -2.91 -0.02 2.73 16 9 C 0.02 1.14 5.46 84.66 0.46 1.60 16 10 N -0.92 -56.02 13.29 21.45 0.28 -55.73 16 11 Si 0.94 45.48 29.54 68.60 2.03 47.51 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 13 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 14 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 15 C 0.10 3.70 4.85 85.56 0.42 4.11 16 16 C -0.10 -3.46 5.27 -19.83 -0.10 -3.57 16 17 C -0.10 -2.95 9.62 22.36 0.22 -2.74 16 18 C 0.09 2.36 6.70 22.49 0.15 2.51 16 19 O -0.50 -9.74 13.50 -92.91 -1.25 -10.99 16 20 C -0.12 -2.90 9.98 22.36 0.22 -2.67 16 21 C -0.15 -4.69 10.02 22.30 0.22 -4.47 16 22 C 0.07 2.74 6.35 22.37 0.14 2.89 16 23 F -0.14 -6.85 13.64 44.97 0.61 -6.23 16 24 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 29 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.03 1.29 6.95 -2.39 -0.02 1.27 16 31 H 0.02 0.91 6.16 -2.38 -0.01 0.90 16 32 H 0.08 2.47 7.68 -2.39 -0.02 2.45 16 33 H 0.00 -0.24 6.77 -2.39 -0.02 -0.26 16 34 H 0.02 1.23 5.07 -2.39 -0.01 1.21 16 35 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 36 H 0.09 3.01 7.53 -2.39 -0.02 2.99 16 37 H 0.03 1.45 6.09 -2.39 -0.01 1.44 16 38 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 39 H 0.41 4.00 9.06 -74.06 -0.67 3.33 16 40 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 41 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -68.92 333.57 1.63 -67.30 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.36 Total: 12.64 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: 3.74 Total: -27.57 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -3.86 Total: -82.64 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -1.25 Total: -10.99 kcal Atomic # 9 Polarization: -6.85 SS G_CDS: 0.61 Total: -6.23 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -68.92 1.63 -67.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140047428.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.985 kcal (2) G-P(sol) polarization free energy of solvation -68.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds