Wall clock time and date at job start Tue Mar 31 2020 05:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47016 * 2 1 4 4 C 1.52998 * 109.47274 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47521 * 180.02562 * 4 3 2 6 6 C 1.46896 * 111.00075 * 66.04071 * 5 4 3 7 7 C 1.50702 * 109.47100 * 199.89058 * 6 5 4 8 8 H 1.07998 * 120.00148 * 355.65130 * 7 6 5 9 9 C 1.37872 * 119.99769 * 175.64999 * 7 6 5 10 10 N 1.31515 * 120.00099 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00066 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47087 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47080 * 119.99633 * 11 9 7 14 14 H 1.48492 * 109.47469 * 240.00320 * 11 9 7 15 15 C 1.46901 * 110.99855 * 190.00357 * 5 4 3 16 16 C 1.50697 * 109.47521 * 75.75877 * 15 5 4 17 17 C 1.38163 * 120.01612 * 254.84791 * 16 15 5 18 18 C 1.38443 * 120.03011 * 179.79001 * 17 16 15 19 19 F 1.35096 * 119.96714 * 180.25273 * 18 17 16 20 20 C 1.38471 * 120.05845 * 0.46487 * 18 17 16 21 21 C 1.38132 * 120.03184 * 359.79254 * 20 18 17 22 22 C 1.38687 * 120.01422 * 75.12495 * 16 15 5 23 23 O 1.35950 * 120.02835 * 0.02562 * 22 16 15 24 24 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47134 * 299.99943 * 1 2 3 26 26 H 1.09003 * 109.47020 * 60.00329 * 1 2 3 27 27 H 1.08997 * 109.47134 * 240.00057 * 2 1 3 28 28 H 1.09003 * 109.47020 * 119.99670 * 2 1 3 29 29 H 1.09006 * 109.47217 * 59.99843 * 3 2 1 30 30 H 1.09003 * 109.46957 * 299.99709 * 3 2 1 31 31 H 1.09002 * 109.47359 * 59.99592 * 4 3 2 32 32 H 1.09003 * 109.47331 * 300.00322 * 4 3 2 33 33 H 1.08994 * 109.47325 * 319.89932 * 6 5 4 34 34 H 1.09006 * 109.46853 * 79.89251 * 6 5 4 35 35 H 0.96999 * 120.00030 * 179.97438 * 10 9 7 36 36 H 1.09006 * 109.46507 * 195.76152 * 15 5 4 37 37 H 1.09004 * 109.46777 * 315.75439 * 15 5 4 38 38 H 1.08003 * 119.98542 * 0.02562 * 17 16 15 39 39 H 1.08000 * 119.98783 * 179.76612 * 20 18 17 40 40 H 1.07999 * 120.01569 * 179.97438 * 21 20 18 41 41 H 0.96696 * 114.00231 * 90.00185 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0597 2.8275 0.0013 6 6 3.7096 3.5092 1.2545 7 6 3.7728 5.0008 1.0497 8 1 4.1133 5.4025 0.1068 9 6 3.3959 5.8528 2.0661 10 7 2.9817 5.3637 3.2145 11 14 3.4735 7.7018 1.8120 12 1 3.9690 7.9929 0.4427 13 1 2.1170 8.2820 1.9807 14 1 4.3956 8.3004 2.8102 15 6 5.5086 2.8737 -0.2363 16 6 5.7867 2.6209 -1.6957 17 6 6.2915 1.4005 -2.1018 18 6 6.5430 1.1665 -3.4429 19 9 7.0318 -0.0290 -3.8392 20 6 6.2982 2.1581 -4.3779 21 6 5.7985 3.3809 -3.9740 22 6 5.5415 3.6151 -2.6310 23 8 5.0506 4.8184 -2.2320 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9288 0.8908 33 1 2.7003 3.2257 1.5526 34 1 4.4137 3.2194 2.0346 35 1 2.7169 5.9630 3.9297 36 1 5.8912 3.8558 0.0417 37 1 5.9999 2.1088 0.3651 38 1 6.4864 0.6275 -1.3731 39 1 6.4984 1.9755 -5.4234 40 1 5.6081 4.1542 -4.7034 41 1 5.7323 5.4680 -2.0122 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140055557.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:59 Heat of formation + Delta-G solvation = -74.228988 kcal Electronic energy + Delta-G solvation = -22373.589199 eV Core-core repulsion = 18974.668785 eV Total energy + Delta-G solvation = -3398.920414 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.79423 -39.65313 -37.04870 -36.09639 -34.27090 -32.62130 -31.38246 -29.29536 -28.54911 -26.88950 -24.88376 -22.89778 -22.54871 -21.70411 -20.66969 -19.67432 -18.05393 -17.02224 -16.66719 -16.28440 -15.58806 -15.15832 -15.03460 -14.62549 -14.46934 -14.06346 -13.82126 -13.61069 -13.47803 -12.97525 -12.70684 -12.60749 -12.12869 -11.95340 -11.68844 -11.63298 -11.29089 -11.13331 -10.92067 -10.75184 -10.64997 -10.49623 -10.31969 -10.16266 -10.00733 -9.54810 -9.18247 -8.85658 -8.37693 -8.20671 -7.20636 -5.97187 -3.96587 1.22866 1.28880 3.32854 3.40940 3.44841 3.58370 4.32684 4.46707 4.49445 4.79404 4.90721 4.97820 5.22188 5.31521 5.38097 5.44435 5.48338 5.53064 5.76886 5.85982 5.91195 5.99352 6.07441 6.09035 6.16392 6.17816 6.24247 6.28040 6.33863 6.41314 6.45922 6.67792 6.77443 6.90043 6.91063 7.26358 7.36811 7.92004 8.05963 8.16448 8.23719 8.60390 9.14428 9.66860 11.13795 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011947 B = 0.006151 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.125153 B = 4550.803837 C = 6251.926274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.115 4.115 4 C 0.056 3.944 5 N -0.520 5.520 6 C 0.189 3.811 7 C -0.496 4.496 8 H 0.073 0.927 9 C 0.051 3.949 10 N -0.903 5.903 11 Si 0.895 3.105 12 H -0.271 1.271 13 H -0.286 1.286 14 H -0.288 1.288 15 C 0.104 3.896 16 C -0.062 4.062 17 C -0.138 4.138 18 C 0.078 3.922 19 F -0.146 7.146 20 C -0.147 4.147 21 C -0.126 4.126 22 C 0.129 3.871 23 O -0.470 6.470 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.018 0.982 33 H 0.039 0.961 34 H -0.014 1.014 35 H 0.259 0.741 36 H 0.094 0.906 37 H 0.029 0.971 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.067 -7.532 -11.259 14.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.153 4.153 4 C -0.072 4.072 5 N -0.244 5.244 6 C 0.065 3.935 7 C -0.535 4.535 8 H 0.091 0.909 9 C -0.149 4.149 10 N -0.543 5.543 11 Si 0.723 3.277 12 H -0.196 1.196 13 H -0.212 1.212 14 H -0.214 1.214 15 C -0.024 4.024 16 C -0.064 4.064 17 C -0.158 4.158 18 C 0.059 3.941 19 F -0.125 7.125 20 C -0.166 4.166 21 C -0.145 4.145 22 C 0.083 3.917 23 O -0.279 6.279 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.037 0.963 33 H 0.057 0.943 34 H 0.004 0.996 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.047 0.953 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 4.233 -7.517 -11.549 14.416 hybrid contribution 0.858 0.546 0.659 1.212 sum 5.091 -6.972 -10.890 13.897 Atomic orbital electron populations 1.21749 0.96190 1.00787 1.01984 1.21495 0.95621 0.97686 1.01174 1.21610 0.95065 0.95278 1.03304 1.22064 0.95551 0.90892 0.98716 1.62074 1.09983 1.12741 1.39641 1.19850 0.96246 0.94036 0.83410 1.21324 1.42390 0.90350 0.99445 0.90904 1.24998 0.95789 0.98840 0.95261 1.69971 1.45517 1.34714 1.04143 0.86489 0.77530 0.85635 0.78007 1.19599 1.21249 1.21430 1.20826 0.90991 1.01979 0.88641 1.20365 0.95790 0.92631 0.97603 1.20971 1.02577 0.98116 0.94119 1.17610 1.01525 0.81789 0.93168 1.91463 1.85786 1.43707 1.91513 1.20876 1.03153 0.93170 0.99396 1.21292 0.99801 0.97424 0.95986 1.18321 0.95080 0.87759 0.90543 1.85016 1.34598 1.20502 1.87781 0.93404 0.92640 0.92859 0.92685 0.92558 0.91044 0.91574 0.92578 0.96344 0.94288 0.99610 0.93183 0.88749 0.95256 0.85004 0.85011 0.84788 0.75827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.12 -1.74 5.93 -26.73 -0.16 -1.89 16 3 C -0.11 -2.03 5.19 -26.73 -0.14 -2.17 16 4 C 0.06 1.03 4.78 -3.82 -0.02 1.01 16 5 N -0.52 -10.90 4.34 -237.51 -1.03 -11.93 16 6 C 0.19 4.77 4.59 -4.98 -0.02 4.75 16 7 C -0.50 -13.42 8.53 -34.44 -0.29 -13.71 16 8 H 0.07 1.94 7.21 -52.49 -0.38 1.56 16 9 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 10 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 11 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 C 0.10 1.90 4.55 -4.98 -0.02 1.88 16 16 C -0.06 -0.99 4.83 -104.48 -0.50 -1.50 16 17 C -0.14 -1.98 8.98 -39.53 -0.35 -2.33 16 18 C 0.08 1.07 7.30 -39.42 -0.29 0.78 16 19 F -0.15 -2.00 17.27 2.25 0.04 -1.96 16 20 C -0.15 -1.80 10.02 -39.53 -0.40 -2.20 16 21 C -0.13 -1.62 9.99 -39.44 -0.39 -2.02 16 22 C 0.13 1.97 6.68 -39.23 -0.26 1.71 16 23 O -0.47 -7.70 12.27 -19.58 -0.24 -7.94 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.43 6.25 -51.93 -0.32 1.10 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 0.96 6.89 -51.93 -0.36 0.60 16 32 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 33 H 0.04 1.06 5.87 -51.93 -0.31 0.76 16 34 H -0.01 -0.37 8.00 -51.93 -0.42 -0.79 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.09 1.84 7.14 -51.93 -0.37 1.47 16 37 H 0.03 0.51 7.81 -51.93 -0.41 0.11 16 38 H 0.13 1.73 8.00 -52.48 -0.42 1.31 16 39 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 41 H 0.39 4.71 9.06 45.56 0.41 5.12 16 LS Contribution 342.39 15.07 5.16 5.16 Total: -1.00 -30.31 342.39 -8.44 -38.75 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.50 Total: 3.35 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -2.58 Total: -15.93 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.29 Total: -37.69 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.24 Total: -7.94 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.31 -8.44 -38.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140055557.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.478 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds