Wall clock time and date at job start Tue Mar 31 2020 05:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47016 * 2 1 4 4 C 1.52998 * 109.47274 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47521 * 180.02562 * 4 3 2 6 6 C 1.46896 * 111.00075 * 66.04071 * 5 4 3 7 7 C 1.50702 * 109.47100 * 199.89058 * 6 5 4 8 8 H 1.07998 * 120.00148 * 355.65130 * 7 6 5 9 9 C 1.37872 * 119.99769 * 175.64999 * 7 6 5 10 10 N 1.31515 * 120.00099 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00066 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47087 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47080 * 119.99633 * 11 9 7 14 14 H 1.48492 * 109.47469 * 240.00320 * 11 9 7 15 15 C 1.46901 * 110.99855 * 190.00357 * 5 4 3 16 16 C 1.50697 * 109.47521 * 75.75877 * 15 5 4 17 17 C 1.38163 * 120.01612 * 254.84791 * 16 15 5 18 18 C 1.38443 * 120.03011 * 179.79001 * 17 16 15 19 19 F 1.35096 * 119.96714 * 180.25273 * 18 17 16 20 20 C 1.38471 * 120.05845 * 0.46487 * 18 17 16 21 21 C 1.38132 * 120.03184 * 359.79254 * 20 18 17 22 22 C 1.38687 * 120.01422 * 75.12495 * 16 15 5 23 23 O 1.35950 * 120.02835 * 0.02562 * 22 16 15 24 24 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47134 * 299.99943 * 1 2 3 26 26 H 1.09003 * 109.47020 * 60.00329 * 1 2 3 27 27 H 1.08997 * 109.47134 * 240.00057 * 2 1 3 28 28 H 1.09003 * 109.47020 * 119.99670 * 2 1 3 29 29 H 1.09006 * 109.47217 * 59.99843 * 3 2 1 30 30 H 1.09003 * 109.46957 * 299.99709 * 3 2 1 31 31 H 1.09002 * 109.47359 * 59.99592 * 4 3 2 32 32 H 1.09003 * 109.47331 * 300.00322 * 4 3 2 33 33 H 1.08994 * 109.47325 * 319.89932 * 6 5 4 34 34 H 1.09006 * 109.46853 * 79.89251 * 6 5 4 35 35 H 0.96999 * 120.00030 * 179.97438 * 10 9 7 36 36 H 1.09006 * 109.46507 * 195.76152 * 15 5 4 37 37 H 1.09004 * 109.46777 * 315.75439 * 15 5 4 38 38 H 1.08003 * 119.98542 * 0.02562 * 17 16 15 39 39 H 1.08000 * 119.98783 * 179.76612 * 20 18 17 40 40 H 1.07999 * 120.01569 * 179.97438 * 21 20 18 41 41 H 0.96696 * 114.00231 * 90.00185 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0597 2.8275 0.0013 6 6 3.7096 3.5092 1.2545 7 6 3.7728 5.0008 1.0497 8 1 4.1133 5.4025 0.1068 9 6 3.3959 5.8528 2.0661 10 7 2.9817 5.3637 3.2145 11 14 3.4735 7.7018 1.8120 12 1 3.9690 7.9929 0.4427 13 1 2.1170 8.2820 1.9807 14 1 4.3956 8.3004 2.8102 15 6 5.5086 2.8737 -0.2363 16 6 5.7867 2.6209 -1.6957 17 6 6.2915 1.4005 -2.1018 18 6 6.5430 1.1665 -3.4429 19 9 7.0318 -0.0290 -3.8392 20 6 6.2982 2.1581 -4.3779 21 6 5.7985 3.3809 -3.9740 22 6 5.5415 3.6151 -2.6310 23 8 5.0506 4.8184 -2.2320 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9288 0.8908 33 1 2.7003 3.2257 1.5526 34 1 4.4137 3.2194 2.0346 35 1 2.7169 5.9630 3.9297 36 1 5.8912 3.8558 0.0417 37 1 5.9999 2.1088 0.3651 38 1 6.4864 0.6275 -1.3731 39 1 6.4984 1.9755 -5.4234 40 1 5.6081 4.1542 -4.7034 41 1 5.7323 5.4680 -2.0122 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140055557.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:58 Heat of formation + Delta-G solvation = -93.144855 kcal Electronic energy + Delta-G solvation = -22374.409453 eV Core-core repulsion = 18974.668785 eV Total energy + Delta-G solvation = -3399.740668 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.84920 -40.83434 -38.60081 -37.26128 -35.63899 -34.59603 -32.67079 -30.45625 -30.07983 -28.56926 -26.34423 -24.63158 -23.65810 -23.02220 -21.92605 -21.28311 -19.21597 -18.50911 -18.12998 -17.63010 -16.88852 -16.58723 -16.29862 -16.17856 -15.93503 -15.55116 -15.24695 -14.86195 -14.61180 -14.22056 -14.02874 -13.93151 -13.85341 -13.28713 -13.23468 -12.97894 -12.75321 -12.59780 -12.49146 -12.42223 -12.13077 -12.05288 -11.70488 -11.64961 -11.33392 -11.18831 -11.14271 -10.51832 -9.97194 -9.33094 -8.93700 -8.11017 -6.18183 0.13849 0.21190 1.43764 1.45872 1.58697 2.44918 2.50353 3.18456 3.24146 3.41426 3.44593 3.75441 3.84252 4.02196 4.13032 4.15004 4.31177 4.37869 4.45617 4.52756 4.63823 4.70715 4.82090 4.92990 4.93995 4.98560 5.01314 5.08251 5.14115 5.17652 5.21026 5.29008 5.32364 5.44058 5.49879 5.57077 5.80517 5.85088 6.18322 6.44157 6.69480 6.99979 7.01396 7.50297 9.00126 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011947 B = 0.006151 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.125153 B = 4550.803837 C = 6251.926274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.109 4.109 4 C 0.058 3.942 5 N -0.527 5.527 6 C 0.205 3.795 7 C -0.503 4.503 8 H 0.076 0.924 9 C -0.004 4.004 10 N -0.942 5.942 11 Si 0.964 3.036 12 H -0.256 1.256 13 H -0.287 1.287 14 H -0.283 1.283 15 C 0.108 3.892 16 C -0.081 4.081 17 C -0.138 4.138 18 C 0.073 3.927 19 F -0.145 7.145 20 C -0.132 4.132 21 C -0.119 4.119 22 C 0.116 3.884 23 O -0.493 6.493 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.015 0.985 33 H 0.013 0.987 34 H -0.044 1.044 35 H 0.260 0.740 36 H 0.075 0.925 37 H 0.033 0.967 38 H 0.139 0.861 39 H 0.164 0.836 40 H 0.159 0.841 41 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.601 -7.796 -13.812 16.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.147 4.147 4 C -0.070 4.070 5 N -0.250 5.250 6 C 0.079 3.921 7 C -0.542 4.542 8 H 0.094 0.906 9 C -0.200 4.200 10 N -0.584 5.584 11 Si 0.790 3.210 12 H -0.180 1.180 13 H -0.213 1.213 14 H -0.209 1.209 15 C -0.019 4.019 16 C -0.082 4.082 17 C -0.158 4.158 18 C 0.054 3.946 19 F -0.124 7.124 20 C -0.151 4.151 21 C -0.138 4.138 22 C 0.070 3.930 23 O -0.305 6.305 24 H 0.090 0.910 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.034 0.966 33 H 0.031 0.969 34 H -0.026 1.026 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.051 0.949 38 H 0.156 0.844 39 H 0.181 0.819 40 H 0.177 0.823 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 4.789 -7.791 -14.125 16.827 hybrid contribution 0.738 0.567 1.402 1.682 sum 5.526 -7.225 -12.724 15.641 Atomic orbital electron populations 1.21741 0.95075 1.02208 1.01544 1.21451 0.96592 0.95088 1.02159 1.21544 0.94614 0.97424 1.01104 1.22123 0.95966 0.89551 0.99346 1.62016 1.12077 1.14172 1.36766 1.19485 0.93981 0.94032 0.84579 1.21628 1.41760 0.91332 0.99479 0.90554 1.25887 0.95429 1.03810 0.94902 1.70111 1.46701 1.36446 1.05112 0.85399 0.77362 0.79589 0.78652 1.17984 1.21347 1.20895 1.20715 0.89157 1.01111 0.90965 1.20087 0.98208 0.93948 0.95939 1.20987 1.02198 0.97608 0.94976 1.17690 1.01677 0.82183 0.93067 1.91470 1.85786 1.43739 1.91412 1.21222 1.01059 0.92087 1.00695 1.21493 0.98832 0.98294 0.95133 1.18549 0.95557 0.87255 0.91606 1.84957 1.36119 1.21346 1.88074 0.91014 0.93747 0.92706 0.90963 0.92192 0.94287 0.92598 0.90649 0.96640 0.96932 1.02604 0.93151 0.90634 0.94907 0.84354 0.81852 0.82293 0.74264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.91 71.98 0.71 -2.95 16 2 C -0.11 -3.17 5.93 30.59 0.18 -2.99 16 3 C -0.11 -3.93 5.19 30.59 0.16 -3.77 16 4 C 0.06 2.16 4.78 86.30 0.41 2.58 16 5 N -0.53 -22.69 4.34 -905.35 -3.93 -26.63 16 6 C 0.21 10.87 4.59 85.56 0.39 11.26 16 7 C -0.50 -27.99 8.53 25.60 0.22 -27.77 16 8 H 0.08 4.11 7.21 -2.91 -0.02 4.09 16 9 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 10 N -0.94 -57.02 13.29 21.45 0.28 -56.73 16 11 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 12 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 13 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 14 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 15 C 0.11 4.05 4.55 85.56 0.39 4.44 16 16 C -0.08 -2.50 4.83 -19.78 -0.10 -2.60 16 17 C -0.14 -3.74 8.98 22.30 0.20 -3.54 16 18 C 0.07 1.79 7.30 22.37 0.16 1.95 16 19 F -0.15 -3.57 17.27 44.97 0.78 -2.79 16 20 C -0.13 -2.75 10.02 22.30 0.22 -2.52 16 21 C -0.12 -2.70 9.99 22.36 0.22 -2.47 16 22 C 0.12 3.39 6.68 22.49 0.15 3.54 16 23 O -0.49 -15.84 12.27 -92.99 -1.14 -16.98 16 24 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.04 1.64 6.25 -2.38 -0.01 1.63 16 30 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.08 2.51 6.89 -2.39 -0.02 2.50 16 32 H 0.02 0.58 8.12 -2.39 -0.02 0.56 16 33 H 0.01 0.73 5.87 -2.39 -0.01 0.72 16 34 H -0.04 -2.51 8.00 -2.38 -0.02 -2.53 16 35 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 36 H 0.08 3.06 7.14 -2.38 -0.02 3.04 16 37 H 0.03 1.18 7.81 -2.38 -0.02 1.16 16 38 H 0.14 3.46 8.00 -2.91 -0.02 3.44 16 39 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 41 H 0.40 9.57 9.06 -74.06 -0.67 8.90 16 Total: -1.00 -66.34 342.39 2.16 -64.17 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.35 Total: 17.40 kcal Atomic # 6 Polarization: -28.38 SS G_CDS: 3.79 Total: -24.59 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -3.65 Total: -83.36 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -1.14 Total: -16.98 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.78 Total: -2.79 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -66.34 2.16 -64.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140055557.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.971 kcal (2) G-P(sol) polarization free energy of solvation -66.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds