Wall clock time and date at job start Tue Mar 31 2020 05:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47326 * 2 1 4 4 C 1.53004 * 109.46912 * 180.02562 * 3 2 1 5 5 N 1.46905 * 109.46791 * 179.97438 * 4 3 2 6 6 C 1.46902 * 111.00044 * 66.04720 * 5 4 3 7 7 C 1.50696 * 109.47119 * 195.98528 * 6 5 4 8 8 H 1.08005 * 119.99996 * 4.45376 * 7 6 5 9 9 C 1.37876 * 120.00132 * 184.45035 * 7 6 5 10 10 N 1.31517 * 119.99794 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00060 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47303 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47139 * 120.00111 * 11 9 7 14 14 H 1.48503 * 109.47250 * 239.99869 * 11 9 7 15 15 C 1.46898 * 110.99491 * 189.99377 * 5 4 3 16 16 C 1.50702 * 109.47118 * 76.10539 * 15 5 4 17 17 C 1.38250 * 119.95486 * 254.19391 * 16 15 5 18 18 C 1.38140 * 120.07904 * 179.76626 * 17 16 15 19 19 C 1.38772 * 119.99018 * 0.52268 * 18 17 16 20 20 O 1.35899 * 120.03639 * 179.70418 * 19 18 17 21 21 C 1.38668 * 119.91884 * 359.72770 * 19 18 17 22 22 C 1.38387 * 119.91944 * 359.97438 * 21 19 18 23 23 F 1.35092 * 119.99810 * 179.97438 * 22 21 19 24 24 H 1.08993 * 109.47497 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47151 * 300.00357 * 1 2 3 26 26 H 1.09003 * 109.46950 * 59.99490 * 1 2 3 27 27 H 1.08999 * 109.46652 * 239.99813 * 2 1 3 28 28 H 1.09003 * 109.46950 * 120.00510 * 2 1 3 29 29 H 1.08999 * 109.47408 * 60.00275 * 3 2 1 30 30 H 1.08999 * 109.47058 * 300.00102 * 3 2 1 31 31 H 1.08996 * 109.47306 * 60.00260 * 4 3 2 32 32 H 1.09005 * 109.46762 * 299.99436 * 4 3 2 33 33 H 1.09003 * 109.47173 * 315.98639 * 6 5 4 34 34 H 1.09000 * 109.47202 * 75.98336 * 6 5 4 35 35 H 0.97003 * 119.99604 * 179.97438 * 10 9 7 36 36 H 1.09001 * 109.46892 * 196.09609 * 15 5 4 37 37 H 1.08995 * 109.47480 * 316.10247 * 15 5 4 38 38 H 1.07999 * 119.96223 * 359.97438 * 17 16 15 39 39 H 1.07998 * 120.00508 * 180.24563 * 18 17 16 40 40 H 0.96699 * 114.00189 * 270.01805 * 20 19 18 41 41 H 1.07995 * 120.03992 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0598 2.8274 -0.0013 6 6 3.7109 3.5097 1.2520 7 6 3.8666 4.9980 1.0739 8 1 4.1223 5.4021 0.1055 9 6 3.6827 5.8437 2.1471 10 7 3.3718 5.3515 3.3264 11 14 3.8750 7.6885 1.9262 12 1 4.2243 7.9841 0.5135 13 1 2.5986 8.3642 2.2717 14 1 4.9544 8.1840 2.8176 15 6 5.5085 2.8733 -0.2399 16 6 5.7850 2.6279 -1.7009 17 6 6.3012 1.4127 -2.1112 18 6 6.5511 1.1833 -3.4503 19 6 6.2941 2.1772 -4.3840 20 8 6.5452 1.9546 -5.7010 21 6 5.7813 3.3978 -3.9717 22 6 5.5264 3.6216 -2.6300 23 9 5.0273 4.8103 -2.2264 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9330 0.9287 -0.8908 32 1 3.9337 0.9284 0.8892 33 1 2.6779 3.2813 1.5147 34 1 4.3723 3.1678 2.0481 35 1 3.2427 5.9466 4.0816 36 1 5.8924 3.8535 0.0428 37 1 5.9996 2.1047 0.3569 38 1 6.5061 0.6407 -1.3843 39 1 6.9505 0.2322 -3.7699 40 1 7.4386 2.1999 -5.9780 41 1 5.5802 4.1725 -4.6967 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140127547.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:48 Heat of formation + Delta-G solvation = -75.804469 kcal Electronic energy + Delta-G solvation = -22329.443677 eV Core-core repulsion = 18930.454945 eV Total energy + Delta-G solvation = -3398.988732 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.34648 -39.58878 -37.59884 -36.25434 -34.21952 -32.50403 -30.76961 -30.32734 -28.57254 -26.68369 -24.64667 -22.96131 -22.65489 -21.74186 -20.70366 -19.67682 -18.60662 -16.66911 -16.39179 -16.04972 -15.70469 -15.31455 -15.01947 -14.59912 -14.56555 -14.02005 -13.87819 -13.64158 -13.50742 -13.10833 -12.76637 -12.48272 -12.07169 -12.01651 -11.73601 -11.52098 -11.23437 -10.98206 -10.90512 -10.77668 -10.73358 -10.60519 -10.45657 -10.31591 -10.00750 -9.64907 -9.16752 -8.78689 -8.40089 -8.26045 -7.25683 -5.98344 -3.98327 1.20292 1.30983 3.33923 3.41656 3.48570 3.55745 4.02331 4.47445 4.72160 4.81940 4.93780 5.06952 5.11083 5.28515 5.37056 5.40050 5.45963 5.53011 5.75478 5.76410 5.86205 6.01414 6.05429 6.13744 6.18285 6.19657 6.25693 6.30785 6.36793 6.41695 6.46917 6.57646 6.74460 6.86349 6.93321 7.27998 7.36461 7.54700 7.90027 8.12829 8.19527 8.58469 9.12698 9.66066 11.12293 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011248 B = 0.006323 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.776307 B = 4427.309660 C = 6280.603201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.116 4.116 4 C 0.057 3.943 5 N -0.530 5.530 6 C 0.190 3.810 7 C -0.502 4.502 8 H 0.069 0.931 9 C 0.054 3.946 10 N -0.901 5.901 11 Si 0.893 3.107 12 H -0.271 1.271 13 H -0.285 1.285 14 H -0.286 1.286 15 C 0.098 3.902 16 C -0.105 4.105 17 C -0.077 4.077 18 C -0.161 4.161 19 C 0.120 3.880 20 O -0.498 6.498 21 C -0.190 4.190 22 C 0.146 3.854 23 F -0.116 7.116 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.020 0.980 33 H 0.035 0.965 34 H -0.006 1.006 35 H 0.259 0.741 36 H 0.097 0.903 37 H 0.035 0.965 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.389 0.611 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.288 -9.876 -11.978 16.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.153 4.153 4 C -0.072 4.072 5 N -0.254 5.254 6 C 0.065 3.935 7 C -0.541 4.541 8 H 0.087 0.913 9 C -0.146 4.146 10 N -0.541 5.541 11 Si 0.721 3.279 12 H -0.195 1.195 13 H -0.211 1.211 14 H -0.212 1.212 15 C -0.030 4.030 16 C -0.107 4.107 17 C -0.095 4.095 18 C -0.180 4.180 19 C 0.076 3.924 20 O -0.308 6.308 21 C -0.210 4.210 22 C 0.126 3.874 23 F -0.095 7.095 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.053 0.947 34 H 0.012 0.988 35 H 0.069 0.931 36 H 0.115 0.885 37 H 0.053 0.947 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.244 0.756 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.406 -9.709 -12.150 16.165 hybrid contribution 0.816 0.958 0.679 1.430 sum 5.223 -8.751 -11.471 15.344 Atomic orbital electron populations 1.21750 0.96199 1.00825 1.01965 1.21491 0.95609 0.97618 1.01226 1.21618 0.95149 0.95377 1.03204 1.22057 0.95439 0.90793 0.98878 1.62088 1.10446 1.13008 1.39870 1.19828 0.96312 0.93777 0.83539 1.21301 1.46161 0.90837 0.95819 0.91308 1.24973 0.95618 0.98869 0.95156 1.69974 1.48915 1.34893 1.00339 0.86509 0.77576 0.85548 0.78279 1.19521 1.21109 1.21216 1.20881 0.90785 1.02614 0.88670 1.20269 0.99857 0.93180 0.97346 1.20823 0.97558 0.95893 0.95269 1.21317 1.04109 0.99840 0.92752 1.18036 0.99157 0.92077 0.83141 1.84823 1.36895 1.87234 1.21816 1.21347 1.06058 0.98658 0.94922 1.17300 0.96190 0.82422 0.91494 1.91601 1.84141 1.42712 1.91002 0.93368 0.92670 0.92857 0.92625 0.92513 0.91114 0.91643 0.92439 0.96136 0.94702 0.98837 0.93123 0.88465 0.94705 0.85114 0.85333 0.75576 0.84605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.16 0.37 -1.51 16 2 C -0.12 -1.67 5.93 -26.73 -0.16 -1.83 16 3 C -0.12 -1.99 5.18 -26.73 -0.14 -2.13 16 4 C 0.06 1.02 4.78 -3.82 -0.02 1.00 16 5 N -0.53 -11.28 4.37 -237.51 -1.04 -12.32 16 6 C 0.19 4.87 4.59 -4.98 -0.02 4.85 16 7 C -0.50 -14.08 8.30 -34.44 -0.29 -14.36 16 8 H 0.07 1.96 7.39 -52.48 -0.39 1.57 16 9 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 11 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 C 0.10 1.88 4.64 -4.98 -0.02 1.86 16 16 C -0.10 -1.73 4.82 -104.53 -0.50 -2.23 16 17 C -0.08 -1.02 9.04 -39.61 -0.36 -1.37 16 18 C -0.16 -1.93 9.99 -39.42 -0.39 -2.32 16 19 C 0.12 1.52 6.70 -39.23 -0.26 1.26 16 20 O -0.50 -5.29 13.50 -19.42 -0.26 -5.55 16 21 C -0.19 -2.73 9.97 -39.37 -0.39 -3.12 16 22 C 0.15 2.50 7.24 -39.44 -0.29 2.21 16 23 F -0.12 -2.35 16.35 2.25 0.04 -2.32 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.37 6.28 -51.93 -0.33 1.05 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.06 0.95 6.94 -51.93 -0.36 0.59 16 32 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 33 H 0.04 0.95 5.94 -51.93 -0.31 0.64 16 34 H -0.01 -0.17 8.05 -51.93 -0.42 -0.59 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 36 H 0.10 2.09 7.06 -51.93 -0.37 1.72 16 37 H 0.03 0.61 7.79 -51.93 -0.40 0.21 16 38 H 0.13 1.48 7.99 -52.49 -0.42 1.06 16 39 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.39 2.11 9.06 45.56 0.41 2.52 16 41 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -31.38 342.83 -8.47 -39.85 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.52 Total: 0.49 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -2.57 Total: -16.25 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: -0.30 Total: -38.33 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.26 Total: -5.55 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.38 -8.47 -39.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140127547.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.956 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds