Wall clock time and date at job start Tue Mar 31 2020 05:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47080 * 2 1 4 4 C 1.53001 * 109.46765 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46931 * 179.97438 * 4 3 2 6 6 C 1.36936 * 120.00346 * 269.63608 * 5 4 3 7 7 H 1.08008 * 119.99815 * 322.01906 * 6 5 4 8 8 C 1.38807 * 120.00516 * 142.01719 * 6 5 4 9 9 N 1.31624 * 119.99896 * 157.09421 * 8 6 5 10 10 Si 1.86797 * 120.00040 * 337.09876 * 8 6 5 11 11 H 1.48506 * 109.47231 * 95.69278 * 10 8 6 12 12 H 1.48495 * 109.47468 * 215.69396 * 10 8 6 13 13 H 1.48495 * 109.47101 * 335.69647 * 10 8 6 14 14 C 1.46502 * 120.00055 * 89.63447 * 5 4 3 15 15 C 1.50691 * 109.47381 * 90.00160 * 14 5 4 16 16 C 1.38254 * 119.96522 * 89.99822 * 15 14 5 17 17 C 1.38472 * 120.08871 * 179.97438 * 16 15 14 18 18 F 1.35100 * 119.99717 * 180.02562 * 17 16 15 19 19 C 1.38387 * 120.00460 * 0.02562 * 17 16 15 20 20 C 1.38668 * 119.91987 * 0.02562 * 19 17 16 21 21 O 1.35896 * 120.04068 * 179.97438 * 20 19 17 22 22 C 1.42905 * 117.00033 * 359.97438 * 21 20 19 23 23 C 1.38133 * 119.96172 * 270.02465 * 15 14 5 24 24 H 1.09005 * 109.46225 * 60.00307 * 1 2 3 25 25 H 1.09003 * 109.46596 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47244 * 300.00419 * 1 2 3 27 27 H 1.08999 * 109.47244 * 239.99581 * 2 1 3 28 28 H 1.08999 * 109.47073 * 119.99715 * 2 1 3 29 29 H 1.09000 * 109.46972 * 59.99974 * 3 2 1 30 30 H 1.08994 * 109.47299 * 299.99499 * 3 2 1 31 31 H 1.08999 * 109.47746 * 60.00347 * 4 3 2 32 32 H 1.08999 * 109.47407 * 299.99726 * 4 3 2 33 33 H 0.97005 * 119.99862 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.46976 * 329.99548 * 14 5 4 35 35 H 1.09004 * 109.47281 * 210.00556 * 14 5 4 36 36 H 1.08006 * 119.95219 * 0.02617 * 16 15 14 37 37 H 1.07994 * 120.03578 * 179.74209 * 19 17 16 38 38 H 1.08991 * 109.47025 * 300.00414 * 22 21 20 39 39 H 1.08999 * 109.46712 * 60.00305 * 22 21 20 40 40 H 1.08998 * 109.46985 * 179.97438 * 22 21 20 41 41 H 1.08007 * 119.99756 * 359.95185 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2943 3.4660 -1.1861 7 1 4.7195 2.9245 -2.0182 8 6 3.9869 4.8131 -1.3191 9 7 4.5919 5.5388 -2.2354 10 14 2.7146 5.5959 -0.1975 11 1 3.3986 6.2443 0.9502 12 1 1.9463 6.6154 -0.9560 13 1 1.7877 4.5504 0.3052 14 6 4.2944 3.5177 1.2684 15 6 5.7148 3.2822 1.7133 16 6 6.7153 4.1505 1.3178 17 6 8.0212 3.9368 1.7255 18 9 8.9973 4.7868 1.3384 19 6 8.3266 2.8526 2.5295 20 6 7.3235 1.9809 2.9254 21 8 7.6207 0.9151 3.7145 22 6 8.9877 0.7532 4.0982 23 6 6.0158 2.1986 2.5153 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9338 0.9285 -0.8891 32 1 3.9330 0.9288 0.8909 33 1 4.3773 6.4803 -2.3281 34 1 3.6087 3.1357 2.0247 35 1 4.1282 4.5866 1.1342 36 1 6.4777 4.9972 0.6907 37 1 9.3456 2.6831 2.8443 38 1 9.6041 0.6386 3.2068 39 1 9.3148 1.6307 4.6559 40 1 9.0864 -0.1329 4.7252 41 1 5.2332 1.5212 2.8238 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140483926.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:49 Heat of formation + Delta-G solvation = -49.039670 kcal Electronic energy + Delta-G solvation = -22372.055773 eV Core-core repulsion = 18974.227650 eV Total energy + Delta-G solvation = -3397.828123 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.49765 -39.83476 -37.64889 -36.10656 -34.09459 -31.79337 -30.73369 -29.96690 -28.22659 -27.26652 -25.67675 -24.09053 -22.18758 -21.52366 -20.93326 -19.97191 -17.99423 -16.68390 -16.64750 -15.80263 -15.76398 -15.56243 -15.14746 -15.03189 -14.77805 -14.29923 -14.27097 -13.72646 -13.15403 -13.04477 -12.76783 -12.40490 -12.20517 -12.08868 -11.99390 -11.89753 -11.42970 -11.15348 -10.94362 -10.84418 -10.72223 -10.67245 -10.51610 -10.31753 -10.02711 -9.85788 -9.60363 -8.58041 -8.37226 -7.88486 -6.92449 -6.05763 -3.46091 1.54168 1.72536 3.26238 3.33176 3.43979 3.48354 3.97426 4.46625 4.60263 4.97196 5.03130 5.09007 5.11307 5.20216 5.34938 5.35210 5.38307 5.49538 5.54369 5.55567 5.68960 5.89291 5.90241 6.08615 6.11997 6.21232 6.26278 6.31098 6.37397 6.40838 6.50181 6.50978 6.59442 6.66079 6.89322 7.06297 7.07373 7.12128 7.57437 7.98408 8.34718 8.90741 9.63891 10.04169 11.09137 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012899 B = 0.006578 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.109677 B = 4255.639033 C = 5935.620496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.140 4.140 4 C 0.151 3.849 5 N -0.593 5.593 6 C -0.266 4.266 7 H 0.079 0.921 8 C 0.039 3.961 9 N -0.892 5.892 10 Si 0.866 3.134 11 H -0.284 1.284 12 H -0.300 1.300 13 H -0.263 1.263 14 C 0.166 3.834 15 C -0.014 4.014 16 C -0.159 4.159 17 C 0.131 3.869 18 F -0.143 7.143 19 C -0.260 4.260 20 C 0.144 3.856 21 O -0.316 6.316 22 C 0.028 3.972 23 C -0.157 4.157 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.040 0.960 33 H 0.264 0.736 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.140 0.860 37 H 0.131 0.869 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.097 0.903 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.462 -8.602 11.223 14.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.180 4.180 4 C 0.025 3.975 5 N -0.313 5.313 6 C -0.394 4.394 7 H 0.097 0.903 8 C -0.162 4.162 9 N -0.532 5.532 10 Si 0.696 3.304 11 H -0.212 1.212 12 H -0.228 1.228 13 H -0.188 1.188 14 C 0.041 3.959 15 C -0.018 4.018 16 C -0.178 4.178 17 C 0.111 3.889 18 F -0.121 7.121 19 C -0.280 4.280 20 C 0.099 3.901 21 O -0.230 6.230 22 C -0.068 4.068 23 C -0.177 4.177 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.115 0.885 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.368 -8.564 11.143 14.252 hybrid contribution -0.085 0.873 0.375 0.954 sum 2.283 -7.691 11.518 14.037 Atomic orbital electron populations 1.21769 0.96715 1.00629 1.01626 1.21500 0.95139 0.98106 1.01287 1.22214 0.98988 0.94769 1.02000 1.20958 0.91228 0.85973 0.99342 1.44115 1.74244 1.11700 1.01269 1.18767 1.36683 0.93423 0.90559 0.90349 1.25464 0.97511 0.96800 0.96410 1.69892 1.40358 1.07028 1.35938 0.87089 0.84098 0.79061 0.80151 1.21200 1.22768 1.18755 1.20346 0.88667 0.98164 0.88743 1.20641 0.98897 0.91509 0.90722 1.21105 0.90471 1.03248 1.03006 1.17414 0.85517 0.88947 0.96977 1.91465 1.61812 1.69349 1.89502 1.20896 0.99945 0.98988 1.08218 1.18623 0.93400 0.86623 0.91461 1.86068 1.28371 1.44006 1.64532 1.23012 0.81343 1.02313 1.00090 1.20309 0.93696 1.00471 1.03227 0.92895 0.93502 0.93170 0.92338 0.92696 0.93159 0.91650 0.92944 0.94184 0.92597 0.92583 0.91606 0.84224 0.85145 0.92718 0.92820 0.88494 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.16 0.37 -1.51 16 2 C -0.12 -1.70 5.93 -26.73 -0.16 -1.86 16 3 C -0.14 -2.44 5.54 -26.73 -0.15 -2.59 16 4 C 0.15 2.86 5.67 -4.04 -0.02 2.84 16 5 N -0.59 -13.36 2.05 -174.61 -0.36 -13.72 16 6 C -0.27 -7.09 9.90 -15.06 -0.15 -7.24 16 7 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 8 C 0.04 1.09 5.29 -17.43 -0.09 1.00 16 9 N -0.89 -26.33 13.97 55.49 0.78 -25.56 16 10 Si 0.87 21.19 25.10 -169.99 -4.27 16.92 16 11 H -0.28 -6.76 6.68 56.52 0.38 -6.38 16 12 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 13 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 14 C 0.17 3.47 4.64 -5.20 -0.02 3.44 16 15 C -0.01 -0.27 5.46 -104.66 -0.57 -0.85 16 16 C -0.16 -3.24 9.68 -39.49 -0.38 -3.63 16 17 C 0.13 2.43 7.30 -39.44 -0.29 2.14 16 18 F -0.14 -2.66 17.27 2.25 0.04 -2.62 16 19 C -0.26 -4.21 9.02 -39.37 -0.35 -4.56 16 20 C 0.14 2.33 6.69 -39.23 -0.26 2.07 16 21 O -0.32 -4.49 10.50 -19.41 -0.20 -4.69 16 22 C 0.03 0.27 9.81 101.05 0.99 1.26 16 23 C -0.16 -2.72 9.64 -39.42 -0.38 -3.10 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 32 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.06 1.03 8.01 -51.93 -0.42 0.61 16 35 H 0.07 1.50 3.32 -51.93 -0.17 1.32 16 36 H 0.14 3.14 8.06 -52.48 -0.42 2.71 16 37 H 0.13 1.75 6.30 -52.49 -0.33 1.42 16 38 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 39 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.13 2.02 8.06 -52.48 -0.42 1.60 16 LS Contribution 340.92 15.07 5.14 5.14 Total: -1.00 -29.26 340.92 -6.71 -35.98 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.36 Total: 1.13 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -1.47 Total: -12.58 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.42 Total: -39.28 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.20 Total: -4.69 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.04 Total: -2.62 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.27 Total: 16.92 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.26 -6.71 -35.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140483926.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.065 kcal (2) G-P(sol) polarization free energy of solvation -29.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds