Wall clock time and date at job start Tue Mar 31 2020 05:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47270 * 2 1 4 4 N 1.46904 * 109.47086 * 182.26780 * 3 2 1 5 5 C 1.46893 * 110.99974 * 299.26375 * 4 3 2 6 6 C 1.50696 * 109.47664 * 288.75884 * 5 4 3 7 7 H 1.08006 * 119.99800 * 1.47789 * 6 5 4 8 8 C 1.37871 * 120.00610 * 181.46497 * 6 5 4 9 9 N 1.31513 * 120.00471 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99965 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47484 * 89.99212 * 10 8 6 12 12 H 1.48495 * 109.47242 * 209.99928 * 10 8 6 13 13 H 1.48503 * 109.46580 * 329.99456 * 10 8 6 14 14 C 1.46895 * 110.99507 * 63.21722 * 4 3 2 15 15 C 1.50702 * 109.47308 * 66.04735 * 14 4 3 16 16 C 1.38300 * 119.98437 * 259.99840 * 15 14 4 17 17 C 1.38223 * 120.12454 * 180.02562 * 16 15 14 18 18 C 1.38220 * 120.09531 * 359.97438 * 17 16 15 19 19 C 1.38614 * 119.97201 * 0.02562 * 18 17 16 20 20 O 1.35960 * 120.06554 * 180.02562 * 19 18 17 21 21 C 1.42894 * 116.99868 * 359.97438 * 20 19 18 22 22 C 1.38294 * 119.98434 * 79.99702 * 15 14 4 23 23 F 1.35097 * 120.04934 * 0.27645 * 22 15 14 24 24 H 1.08996 * 109.47088 * 300.00289 * 1 2 3 25 25 H 1.09003 * 109.47093 * 59.99831 * 1 2 3 26 26 H 1.09000 * 109.47163 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47088 * 239.99711 * 2 1 3 28 28 H 1.09003 * 109.46832 * 119.99686 * 2 1 3 29 29 H 1.09008 * 109.46757 * 62.27161 * 3 2 1 30 30 H 1.09001 * 109.47325 * 302.26979 * 3 2 1 31 31 H 1.09003 * 109.47152 * 48.76600 * 5 4 3 32 32 H 1.09003 * 109.46921 * 168.75896 * 5 4 3 33 33 H 0.96994 * 120.00615 * 180.02562 * 9 8 6 34 34 H 1.08993 * 109.47630 * 306.04713 * 14 4 3 35 35 H 1.08998 * 109.46914 * 186.04410 * 14 4 3 36 36 H 1.07996 * 119.93662 * 359.97259 * 16 15 14 37 37 H 1.08000 * 119.95220 * 180.02562 * 17 16 15 38 38 H 1.07999 * 120.01739 * 180.02562 * 18 17 16 39 39 H 1.09000 * 109.47244 * 180.02562 * 21 20 19 40 40 H 1.09004 * 109.47237 * 300.00029 * 21 20 19 41 41 H 1.08999 * 109.47420 * 59.99803 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5081 1.4428 -0.0548 5 6 4.0786 0.7568 1.1121 6 6 3.8776 1.6050 2.3414 7 1 3.3551 2.5474 2.2678 8 6 4.3604 1.1779 3.5602 9 7 4.1855 1.9184 4.6329 10 14 5.2644 -0.4518 3.6876 11 1 6.7166 -0.2308 3.4696 12 1 5.0492 -1.0331 5.0370 13 1 4.7459 -1.3872 2.6573 14 6 3.9882 0.8411 -1.3059 15 6 3.5858 1.7113 -2.4687 16 6 2.4822 1.3775 -3.2324 17 6 2.1109 2.1733 -4.2999 18 6 2.8412 3.3058 -4.6071 19 6 3.9480 3.6442 -3.8442 20 8 4.6675 4.7581 -4.1444 21 6 4.2264 5.5340 -5.2604 22 6 4.3202 2.8433 -2.7714 23 9 5.4016 3.1667 -2.0290 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.7103 1.9444 0.9097 30 1 1.6439 1.9680 -0.8689 31 1 3.5813 -0.2036 1.2480 32 1 5.1446 0.5946 0.9529 33 1 4.5255 1.6182 5.4902 34 1 3.5493 -0.1495 -1.4246 35 1 5.0744 0.7560 -1.2747 36 1 1.9100 0.4929 -2.9949 37 1 1.2483 1.9102 -4.8942 38 1 2.5497 3.9270 -5.4411 39 1 4.8865 6.3917 -5.3902 40 1 4.2476 4.9201 -6.1609 41 1 3.2090 5.8818 -5.0817 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141223196.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:18 Heat of formation + Delta-G solvation = -52.196306 kcal Electronic energy + Delta-G solvation = -22588.847290 eV Core-core repulsion = 19190.882285 eV Total energy + Delta-G solvation = -3397.965005 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.36811 -40.01975 -38.33640 -36.75960 -32.76482 -32.47633 -30.93745 -30.20710 -27.78590 -27.38340 -26.16876 -23.85979 -22.45588 -22.04648 -21.29218 -19.24758 -17.92141 -16.96197 -16.79979 -16.65621 -16.10643 -15.21119 -15.04285 -14.71606 -14.59761 -14.41427 -14.21215 -13.82203 -13.61936 -13.18559 -12.72696 -12.48651 -12.30007 -12.25673 -11.80870 -11.60752 -11.42035 -11.36730 -11.21510 -11.07642 -10.98888 -10.85304 -10.52654 -10.33563 -9.87327 -9.84540 -9.25756 -8.67120 -8.50841 -8.12999 -7.27330 -5.99682 -3.95950 1.19555 1.31547 3.09519 3.31674 3.38811 3.39750 3.60189 4.39025 4.46038 4.67706 4.77561 4.91857 4.97499 5.01302 5.20168 5.23292 5.29241 5.31627 5.34171 5.43970 5.48158 5.73982 5.76260 5.98099 6.01654 6.04868 6.13176 6.23191 6.30160 6.31412 6.44528 6.46126 6.54812 6.69870 6.83608 6.97075 7.05669 7.29249 7.65124 7.92288 8.06309 8.71135 9.10490 9.62067 11.13750 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.005075 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.714420 B = 5515.630563 C = 6382.573456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.165 4.165 3 C 0.063 3.937 4 N -0.516 5.516 5 C 0.159 3.841 6 C -0.502 4.502 7 H 0.080 0.920 8 C 0.068 3.932 9 N -0.901 5.901 10 Si 0.872 3.128 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.268 1.268 14 C 0.084 3.916 15 C -0.063 4.063 16 C -0.123 4.123 17 C -0.096 4.096 18 C -0.190 4.190 19 C 0.087 3.913 20 O -0.310 6.310 21 C 0.028 3.972 22 C 0.097 3.903 23 F -0.121 7.121 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.058 0.942 31 H -0.002 1.002 32 H 0.022 0.978 33 H 0.263 0.737 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.100 0.900 40 H 0.054 0.946 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.948 0.061 -20.935 21.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.204 4.204 3 C -0.065 4.065 4 N -0.239 5.239 5 C 0.033 3.967 6 C -0.540 4.540 7 H 0.098 0.902 8 C -0.133 4.133 9 N -0.541 5.541 10 Si 0.700 3.300 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.193 1.193 14 C -0.044 4.044 15 C -0.065 4.065 16 C -0.142 4.142 17 C -0.114 4.114 18 C -0.209 4.209 19 C 0.041 3.959 20 O -0.224 6.224 21 C -0.067 4.067 22 C 0.076 3.924 23 F -0.099 7.099 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.016 0.984 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.118 0.882 40 H 0.073 0.927 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.504 0.658 -20.579 21.076 hybrid contribution 0.243 -1.526 0.098 1.548 sum -4.261 -0.867 -20.480 20.937 Atomic orbital electron populations 1.21649 0.96150 1.00738 1.01539 1.22197 0.95910 1.00381 1.01875 1.22127 0.87721 0.94430 1.02247 1.62221 1.06953 1.54210 1.00472 1.20267 0.94213 0.93437 0.88806 1.20993 1.36549 1.06750 0.89753 0.90190 1.24869 0.95892 0.96780 0.95725 1.69888 1.46958 1.37831 0.99400 0.86910 0.80805 0.84917 0.77413 1.20170 1.21283 1.19321 1.21056 1.00856 0.93970 0.88535 1.19872 0.94903 0.94464 0.97214 1.20885 0.96601 1.00975 0.95746 1.20875 0.99258 0.94112 0.97195 1.21020 0.96924 1.00635 1.02278 1.19017 0.93185 0.88359 0.95302 1.86155 1.52261 1.34956 1.48996 1.23060 1.01106 0.95058 0.87446 1.16786 0.88679 0.95509 0.91429 1.91538 1.51223 1.92102 1.75025 0.92514 0.93342 0.93567 0.92953 0.90919 0.89675 0.92383 0.98442 0.96025 0.92746 0.93643 0.90094 0.85244 0.85447 0.85001 0.88186 0.92737 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.16 -2.71 5.29 -26.73 -0.14 -2.85 16 3 C 0.06 1.19 4.96 -3.82 -0.02 1.17 16 4 N -0.52 -10.93 4.65 -237.52 -1.11 -12.03 16 5 C 0.16 3.85 3.63 -4.98 -0.02 3.83 16 6 C -0.50 -14.41 9.15 -34.44 -0.32 -14.73 16 7 H 0.08 2.52 7.65 -52.48 -0.40 2.12 16 8 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 9 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 10 Si 0.87 21.70 27.44 -169.99 -4.66 17.03 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.27 -6.37 6.58 56.52 0.37 -6.00 16 14 C 0.08 1.47 4.62 -4.98 -0.02 1.45 16 15 C -0.06 -1.00 4.58 -104.58 -0.48 -1.47 16 16 C -0.12 -1.57 8.64 -39.56 -0.34 -1.91 16 17 C -0.10 -1.04 10.04 -39.59 -0.40 -1.44 16 18 C -0.19 -2.15 9.04 -39.45 -0.36 -2.51 16 19 C 0.09 1.27 6.69 -39.18 -0.26 1.01 16 20 O -0.31 -4.34 10.36 -19.62 -0.20 -4.54 16 21 C 0.03 0.24 9.81 101.05 0.99 1.23 16 22 C 0.10 1.65 7.25 -39.30 -0.29 1.36 16 23 F -0.12 -2.39 16.50 2.25 0.04 -2.36 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.78 5.99 -51.93 -0.31 0.47 16 28 H 0.07 1.38 6.31 -51.93 -0.33 1.05 16 29 H 0.08 1.83 7.18 -51.92 -0.37 1.46 16 30 H 0.06 1.00 6.46 -51.93 -0.34 0.67 16 31 H 0.00 -0.05 5.01 -51.93 -0.26 -0.31 16 32 H 0.02 0.54 7.17 -51.93 -0.37 0.16 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.05 0.72 5.92 -51.93 -0.31 0.42 16 35 H 0.08 1.47 7.67 -51.93 -0.40 1.07 16 36 H 0.13 1.45 7.78 -52.49 -0.41 1.04 16 37 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.13 1.10 6.30 -52.49 -0.33 0.77 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 41 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 LS Contribution 330.51 15.07 4.98 4.98 Total: -1.00 -32.57 330.51 -7.46 -40.03 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -5.90 Total: -1.39 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -1.38 Total: -14.54 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: -0.33 Total: -39.22 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.20 Total: -4.54 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.66 Total: 17.03 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.57 -7.46 -40.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141223196.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.170 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds