Wall clock time and date at job start Tue Mar 31 2020 05:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47369 * 2 1 4 4 C 1.52995 * 109.47554 * 181.06429 * 3 2 1 5 5 N 1.46498 * 109.47263 * 182.73887 * 4 3 2 6 6 C 1.36941 * 119.99724 * 269.08302 * 5 4 3 7 7 H 1.07997 * 120.00248 * 9.13649 * 6 5 4 8 8 C 1.38809 * 119.99929 * 189.12789 * 6 5 4 9 9 N 1.31622 * 120.00059 * 25.79958 * 8 6 5 10 10 Si 1.86800 * 120.00375 * 205.79209 * 8 6 5 11 11 H 1.48500 * 109.47160 * 60.00092 * 10 8 6 12 12 H 1.48492 * 109.47454 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47181 * 300.00723 * 10 8 6 14 14 C 1.46496 * 120.00373 * 89.08799 * 5 4 3 15 15 C 1.50692 * 109.47629 * 91.19169 * 14 5 4 16 16 C 1.38231 * 120.01382 * 353.11894 * 15 14 5 17 17 C 1.38218 * 120.09645 * 180.02562 * 16 15 14 18 18 C 1.38302 * 120.12634 * 0.04189 * 17 16 15 19 19 C 1.38289 * 120.02928 * 359.95813 * 18 17 16 20 20 F 1.35102 * 120.04876 * 180.02562 * 19 18 17 21 21 C 1.38616 * 120.01958 * 173.13562 * 15 14 5 22 22 O 1.35950 * 120.06309 * 0.25927 * 21 15 14 23 23 C 1.42905 * 116.99888 * 263.83455 * 22 21 15 24 24 H 1.09006 * 109.47270 * 182.80582 * 1 2 3 25 25 H 1.09004 * 109.47217 * 302.80438 * 1 2 3 26 26 H 1.08997 * 109.47570 * 62.80723 * 1 2 3 27 27 H 1.09001 * 109.47163 * 240.00129 * 2 1 3 28 28 H 1.09003 * 109.47060 * 120.00192 * 2 1 3 29 29 H 1.09007 * 109.47293 * 61.06245 * 3 2 1 30 30 H 1.09008 * 109.47021 * 301.06640 * 3 2 1 31 31 H 1.08998 * 109.47165 * 62.73315 * 4 3 2 32 32 H 1.08998 * 109.46895 * 302.73922 * 4 3 2 33 33 H 0.97005 * 120.00261 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.46934 * 331.18905 * 14 5 4 35 35 H 1.09006 * 109.47079 * 211.19496 * 14 5 4 36 36 H 1.07998 * 119.94707 * 0.02562 * 16 15 14 37 37 H 1.08003 * 119.93648 * 180.02562 * 17 16 15 38 38 H 1.07993 * 119.98720 * 179.97438 * 18 17 16 39 39 H 1.09002 * 109.47022 * 184.40268 * 23 22 21 40 40 H 1.08997 * 109.47168 * 304.40088 * 23 22 21 41 41 H 1.09000 * 109.47216 * 64.40268 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5697 1.4426 -0.0268 5 7 4.0592 2.8218 0.0392 6 6 4.2851 3.5240 -1.1146 7 1 3.9659 3.1201 -2.0639 8 6 4.9242 4.7552 -1.0638 9 7 5.7433 5.0311 -0.0712 10 14 4.6220 6.0205 -2.4044 11 1 3.1784 6.3670 -2.4417 12 1 5.4175 7.2419 -2.1207 13 1 5.0300 5.4582 -3.7169 14 6 4.3071 3.4497 1.3393 15 6 5.7394 3.2160 1.7452 16 6 6.5442 2.3820 0.9919 17 6 7.8581 2.1660 1.3630 18 6 8.3716 2.7828 2.4893 19 6 7.5711 3.6182 3.2466 20 9 8.0725 4.2213 4.3467 21 6 6.2504 3.8370 2.8742 22 8 5.4590 4.6533 3.6196 23 6 5.5416 6.0553 3.3554 24 1 -0.3634 -1.0265 0.0503 25 1 -0.3634 0.5568 0.8638 26 1 -0.3634 0.4696 -0.9140 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6923 1.9508 0.8994 30 1 1.6611 1.9618 -0.8803 31 1 3.9170 0.9775 -0.9494 32 1 3.9481 0.8815 0.8277 33 1 6.1902 5.8913 -0.0359 34 1 3.6424 3.0146 2.0856 35 1 4.1201 4.5212 1.2669 36 1 6.1458 1.8984 0.1123 37 1 8.4847 1.5142 0.7723 38 1 9.3984 2.6121 2.7773 39 1 4.9205 6.5967 4.0689 40 1 6.5766 6.3829 3.4528 41 1 5.1909 6.2555 2.3430 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143530347.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:02 Heat of formation + Delta-G solvation = -40.887451 kcal Electronic energy + Delta-G solvation = -23066.766120 eV Core-core repulsion = 19669.291503 eV Total energy + Delta-G solvation = -3397.474617 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.15435 -39.01637 -36.79795 -36.04112 -34.20755 -31.33454 -30.44927 -29.10830 -27.85343 -26.44261 -25.39776 -23.95898 -21.70121 -21.38724 -20.68488 -19.96441 -17.32176 -16.80328 -15.89988 -15.84512 -15.32352 -14.95194 -14.90303 -14.31493 -14.03351 -13.75797 -13.69296 -13.58777 -13.34653 -12.89839 -12.31093 -12.13338 -11.97041 -11.62331 -11.59500 -11.26873 -10.96985 -10.89167 -10.74877 -10.70452 -10.59377 -10.50817 -10.29406 -10.22011 -9.86044 -9.80799 -9.19725 -8.58321 -7.69121 -7.56213 -7.05058 -5.83960 -3.18092 1.99276 2.21998 3.34354 3.42285 3.44510 4.20967 4.43289 4.84871 4.97646 5.14979 5.32164 5.32982 5.50556 5.52141 5.59322 5.88344 5.89102 5.92610 5.99838 6.10288 6.12589 6.20965 6.24910 6.28812 6.29957 6.31527 6.49103 6.52367 6.60243 6.68235 6.86833 6.91522 6.94021 7.05971 7.17791 7.33696 7.59868 7.70086 7.73942 8.20947 8.31380 9.09124 9.75663 10.20254 11.16506 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012596 B = 0.007003 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.400276 B = 3997.169168 C = 5091.380147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.138 4.138 4 C 0.148 3.852 5 N -0.597 5.597 6 C -0.256 4.256 7 H 0.075 0.925 8 C 0.005 3.995 9 N -0.890 5.890 10 Si 0.893 3.107 11 H -0.287 1.287 12 H -0.293 1.293 13 H -0.286 1.286 14 C 0.211 3.789 15 C 0.022 3.978 16 C -0.076 4.076 17 C -0.109 4.109 18 C -0.179 4.179 19 C 0.063 3.937 20 F -0.152 7.152 21 C 0.044 3.956 22 O -0.334 6.334 23 C 0.039 3.961 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.253 0.747 34 H 0.035 0.965 35 H 0.089 0.911 36 H 0.132 0.868 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.078 0.922 40 H 0.034 0.966 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.769 -5.190 3.553 6.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.178 4.178 4 C 0.021 3.979 5 N -0.317 5.317 6 C -0.384 4.384 7 H 0.092 0.908 8 C -0.193 4.193 9 N -0.534 5.534 10 Si 0.723 3.277 11 H -0.214 1.214 12 H -0.219 1.219 13 H -0.212 1.212 14 C 0.085 3.915 15 C 0.018 3.982 16 C -0.094 4.094 17 C -0.127 4.127 18 C -0.198 4.198 19 C 0.043 3.957 20 F -0.131 7.131 21 C -0.001 4.001 22 O -0.250 6.250 23 C -0.055 4.055 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.107 0.893 36 H 0.150 0.850 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.097 0.903 40 H 0.053 0.947 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.780 -5.043 3.726 6.518 hybrid contribution 0.387 1.245 -0.783 1.521 sum -1.393 -3.798 2.943 5.003 Atomic orbital electron populations 1.21764 0.96707 1.00643 1.01584 1.21500 0.95119 0.98230 1.01260 1.22209 0.99202 0.94592 1.01761 1.20835 0.91641 0.86262 0.99116 1.44111 1.75437 1.09750 1.02424 1.19137 1.32788 0.99849 0.86623 0.90760 1.24656 0.97558 0.99227 0.97812 1.70044 1.27415 1.22530 1.33414 0.86506 0.77820 0.81678 0.81726 1.21368 1.21905 1.21220 1.19586 0.88149 0.99120 0.84619 1.20735 0.99673 0.90271 0.87548 1.20880 0.92274 0.97603 0.98691 1.20852 0.96116 0.99888 0.95859 1.20631 0.99354 1.01793 0.98055 1.18048 0.92394 0.98841 0.86409 1.91380 1.87815 1.82338 1.51596 1.18365 0.88345 0.98366 0.95018 1.85951 1.62888 1.16845 1.59347 1.22887 1.00434 0.80201 1.02016 0.93542 0.93030 0.93041 0.92532 0.92613 0.92842 0.92243 0.93464 0.94465 0.93598 0.94720 0.89287 0.85031 0.86726 0.86459 0.90336 0.94682 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 37.15 0.37 -1.41 16 2 C -0.12 -1.64 5.93 -26.74 -0.16 -1.80 16 3 C -0.14 -2.26 5.54 -26.74 -0.15 -2.41 16 4 C 0.15 2.74 4.88 -4.05 -0.02 2.72 16 5 N -0.60 -13.20 1.35 -174.62 -0.24 -13.44 16 6 C -0.26 -6.26 9.36 -15.06 -0.14 -6.40 16 7 H 0.07 1.83 7.95 -52.49 -0.42 1.41 16 8 C 0.01 0.14 4.87 -17.43 -0.08 0.05 16 9 N -0.89 -22.65 8.76 55.49 0.49 -22.16 16 10 Si 0.89 20.57 29.63 -169.99 -5.04 15.53 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.21 4.72 4.82 -5.20 -0.03 4.70 16 15 C 0.02 0.48 3.80 -104.49 -0.40 0.08 16 16 C -0.08 -1.61 8.66 -39.59 -0.34 -1.95 16 17 C -0.11 -2.05 10.04 -39.57 -0.40 -2.45 16 18 C -0.18 -3.37 10.02 -39.54 -0.40 -3.77 16 19 C 0.06 1.30 7.31 -39.30 -0.29 1.01 16 20 F -0.15 -3.10 17.11 2.25 0.04 -3.06 16 21 C 0.04 0.96 5.70 -39.18 -0.22 0.73 16 22 O -0.33 -7.00 9.71 -19.58 -0.19 -7.19 16 23 C 0.04 0.72 11.13 101.05 1.12 1.84 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 30 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 31 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 32 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 33 H 0.25 6.55 8.31 -40.82 -0.34 6.21 16 34 H 0.03 0.74 8.06 -51.93 -0.42 0.32 16 35 H 0.09 2.20 6.10 -51.93 -0.32 1.89 16 36 H 0.13 2.89 6.20 -52.49 -0.33 2.57 16 37 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 38 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 1.23 7.78 -51.93 -0.40 0.82 16 LS Contribution 339.78 15.07 5.12 5.12 Total: -1.00 -25.95 339.78 -7.45 -33.40 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.50 Total: 0.85 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -1.13 Total: -9.06 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.25 Total: -35.60 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.19 Total: -7.19 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.04 Total: -3.06 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.04 Total: 15.53 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -25.95 -7.45 -33.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143530347.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.485 kcal (2) G-P(sol) polarization free energy of solvation -25.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds