Wall clock time and date at job start Tue Mar 31 2020 05:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47369 * 2 1 4 4 C 1.52995 * 109.47554 * 181.06429 * 3 2 1 5 5 N 1.46498 * 109.47263 * 182.73887 * 4 3 2 6 6 C 1.36941 * 119.99724 * 269.08302 * 5 4 3 7 7 H 1.07997 * 120.00248 * 9.13649 * 6 5 4 8 8 C 1.38809 * 119.99929 * 189.12789 * 6 5 4 9 9 N 1.31622 * 120.00059 * 25.79958 * 8 6 5 10 10 Si 1.86800 * 120.00375 * 205.79209 * 8 6 5 11 11 H 1.48500 * 109.47160 * 60.00092 * 10 8 6 12 12 H 1.48492 * 109.47454 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47181 * 300.00723 * 10 8 6 14 14 C 1.46496 * 120.00373 * 89.08799 * 5 4 3 15 15 C 1.50692 * 109.47629 * 91.19169 * 14 5 4 16 16 C 1.38231 * 120.01382 * 353.11894 * 15 14 5 17 17 C 1.38218 * 120.09645 * 180.02562 * 16 15 14 18 18 C 1.38302 * 120.12634 * 0.04189 * 17 16 15 19 19 C 1.38289 * 120.02928 * 359.95813 * 18 17 16 20 20 F 1.35102 * 120.04876 * 180.02562 * 19 18 17 21 21 C 1.38616 * 120.01958 * 173.13562 * 15 14 5 22 22 O 1.35950 * 120.06309 * 0.25927 * 21 15 14 23 23 C 1.42905 * 116.99888 * 263.83455 * 22 21 15 24 24 H 1.09006 * 109.47270 * 182.80582 * 1 2 3 25 25 H 1.09004 * 109.47217 * 302.80438 * 1 2 3 26 26 H 1.08997 * 109.47570 * 62.80723 * 1 2 3 27 27 H 1.09001 * 109.47163 * 240.00129 * 2 1 3 28 28 H 1.09003 * 109.47060 * 120.00192 * 2 1 3 29 29 H 1.09007 * 109.47293 * 61.06245 * 3 2 1 30 30 H 1.09008 * 109.47021 * 301.06640 * 3 2 1 31 31 H 1.08998 * 109.47165 * 62.73315 * 4 3 2 32 32 H 1.08998 * 109.46895 * 302.73922 * 4 3 2 33 33 H 0.97005 * 120.00261 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.46934 * 331.18905 * 14 5 4 35 35 H 1.09006 * 109.47079 * 211.19496 * 14 5 4 36 36 H 1.07998 * 119.94707 * 0.02562 * 16 15 14 37 37 H 1.08003 * 119.93648 * 180.02562 * 17 16 15 38 38 H 1.07993 * 119.98720 * 179.97438 * 18 17 16 39 39 H 1.09002 * 109.47022 * 184.40268 * 23 22 21 40 40 H 1.08997 * 109.47168 * 304.40088 * 23 22 21 41 41 H 1.09000 * 109.47216 * 64.40268 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5697 1.4426 -0.0268 5 7 4.0592 2.8218 0.0392 6 6 4.2851 3.5240 -1.1146 7 1 3.9659 3.1201 -2.0639 8 6 4.9242 4.7552 -1.0638 9 7 5.7433 5.0311 -0.0712 10 14 4.6220 6.0205 -2.4044 11 1 3.1784 6.3670 -2.4417 12 1 5.4175 7.2419 -2.1207 13 1 5.0300 5.4582 -3.7169 14 6 4.3071 3.4497 1.3393 15 6 5.7394 3.2160 1.7452 16 6 6.5442 2.3820 0.9919 17 6 7.8581 2.1660 1.3630 18 6 8.3716 2.7828 2.4893 19 6 7.5711 3.6182 3.2466 20 9 8.0725 4.2213 4.3467 21 6 6.2504 3.8370 2.8742 22 8 5.4590 4.6533 3.6196 23 6 5.5416 6.0553 3.3554 24 1 -0.3634 -1.0265 0.0503 25 1 -0.3634 0.5568 0.8638 26 1 -0.3634 0.4696 -0.9140 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6923 1.9508 0.8994 30 1 1.6611 1.9618 -0.8803 31 1 3.9170 0.9775 -0.9494 32 1 3.9481 0.8815 0.8277 33 1 6.1902 5.8913 -0.0359 34 1 3.6424 3.0146 2.0856 35 1 4.1201 4.5212 1.2669 36 1 6.1458 1.8984 0.1123 37 1 8.4847 1.5142 0.7723 38 1 9.3984 2.6121 2.7773 39 1 4.9205 6.5967 4.0689 40 1 6.5766 6.3829 3.4528 41 1 5.1909 6.2555 2.3430 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143530347.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:02 Heat of formation + Delta-G solvation = -51.051147 kcal Electronic energy + Delta-G solvation = -23067.206850 eV Core-core repulsion = 19669.291503 eV Total energy + Delta-G solvation = -3397.915348 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.74100 -40.61939 -38.40544 -37.58612 -35.58730 -33.10718 -31.98829 -30.67595 -29.29800 -28.03905 -27.06769 -25.50001 -23.19419 -22.96113 -22.06242 -21.52282 -19.00325 -18.45880 -17.50976 -17.46869 -16.96453 -16.70792 -16.19156 -15.88198 -15.59610 -15.45233 -15.28581 -14.98114 -14.86316 -14.27189 -13.76543 -13.59135 -13.49378 -13.12589 -13.05715 -12.98194 -12.67903 -12.44586 -12.30991 -12.21461 -12.11802 -11.93042 -11.82655 -11.76906 -11.50503 -11.24641 -10.79386 -10.43904 -9.27803 -9.19911 -8.84475 -7.73501 -5.07659 0.40254 0.64500 1.47953 1.53866 1.56821 2.55883 2.66328 3.26630 3.32938 3.38308 3.69713 4.06490 4.20333 4.28374 4.37748 4.45225 4.46177 4.57872 4.59361 4.60921 4.68028 4.77145 4.90199 4.94149 4.98612 5.05490 5.10809 5.13108 5.21287 5.27527 5.36336 5.46612 5.48914 5.54691 5.67574 5.69928 5.76722 5.97644 6.11283 6.33361 6.71701 7.20012 7.93625 8.35481 9.22315 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012596 B = 0.007003 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.400276 B = 3997.169168 C = 5091.380147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.127 4.127 4 C 0.148 3.852 5 N -0.605 5.605 6 C -0.256 4.256 7 H 0.071 0.929 8 C -0.032 4.032 9 N -0.895 5.895 10 Si 0.939 3.061 11 H -0.291 1.291 12 H -0.302 1.302 13 H -0.285 1.285 14 C 0.221 3.779 15 C 0.006 3.994 16 C -0.088 4.088 17 C -0.103 4.103 18 C -0.170 4.170 19 C 0.047 3.953 20 F -0.152 7.152 21 C 0.030 3.970 22 O -0.345 6.345 23 C 0.043 3.957 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.243 0.757 34 H 0.038 0.962 35 H 0.060 0.940 36 H 0.120 0.880 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.112 0.888 40 H 0.034 0.966 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.396 -6.402 3.721 7.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.167 4.167 4 C 0.023 3.977 5 N -0.326 5.326 6 C -0.385 4.385 7 H 0.089 0.911 8 C -0.228 4.228 9 N -0.541 5.541 10 Si 0.770 3.230 11 H -0.219 1.219 12 H -0.229 1.229 13 H -0.212 1.212 14 C 0.095 3.905 15 C 0.002 3.998 16 C -0.106 4.106 17 C -0.121 4.121 18 C -0.188 4.188 19 C 0.028 3.972 20 F -0.131 7.131 21 C -0.015 4.015 22 O -0.262 6.262 23 C -0.052 4.052 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.138 0.862 37 H 0.166 0.834 38 H 0.168 0.832 39 H 0.130 0.870 40 H 0.053 0.947 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.421 -6.279 3.893 7.523 hybrid contribution 0.271 1.592 -0.815 1.809 sum -1.150 -4.686 3.078 5.723 Atomic orbital electron populations 1.21743 0.95405 1.01908 1.01451 1.21450 0.96234 0.95800 1.02046 1.22053 0.97510 0.96711 1.00456 1.20964 0.92821 0.84504 0.99460 1.44207 1.75663 1.11003 1.01693 1.19249 1.31869 1.00142 0.87260 0.91149 1.25093 0.98141 1.00329 0.99285 1.70194 1.27879 1.21827 1.34159 0.85777 0.76965 0.79936 0.80313 1.21873 1.22925 1.21171 1.19339 0.88973 0.97395 0.84821 1.20674 0.99439 0.91349 0.88331 1.20890 0.93422 0.97966 0.98368 1.21178 0.95413 0.99629 0.95893 1.20989 1.00533 1.00170 0.97157 1.18262 0.92421 0.99624 0.86907 1.91375 1.87692 1.82436 1.51592 1.18536 0.89015 0.98712 0.95220 1.85916 1.63155 1.17838 1.59328 1.22960 1.01023 0.79336 1.01844 0.91569 0.93192 0.93224 0.91806 0.91747 0.93849 0.93818 0.93374 0.93624 0.94728 0.94398 0.92218 0.86195 0.83417 0.83230 0.87001 0.94728 0.94148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.91 71.98 0.71 -2.50 16 2 C -0.12 -2.92 5.93 30.59 0.18 -2.73 16 3 C -0.13 -4.12 5.54 30.59 0.17 -3.95 16 4 C 0.15 5.41 4.88 86.38 0.42 5.83 16 5 N -0.60 -26.97 1.35 -706.38 -0.95 -27.92 16 6 C -0.26 -12.64 9.36 84.03 0.79 -11.85 16 7 H 0.07 3.47 7.95 -2.91 -0.02 3.45 16 8 C -0.03 -1.62 4.87 84.86 0.41 -1.21 16 9 N -0.90 -46.25 8.76 21.65 0.19 -46.06 16 10 Si 0.94 42.83 29.63 68.60 2.03 44.86 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 13 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 14 C 0.22 10.04 4.82 85.63 0.41 10.45 16 15 C 0.01 0.26 3.80 -19.78 -0.08 0.18 16 16 C -0.09 -3.65 8.66 22.26 0.19 -3.46 16 17 C -0.10 -3.65 10.04 22.28 0.22 -3.43 16 18 C -0.17 -5.96 10.02 22.30 0.22 -5.73 16 19 C 0.05 1.91 7.31 22.45 0.16 2.07 16 20 F -0.15 -5.97 17.11 44.97 0.77 -5.20 16 21 C 0.03 1.30 5.70 22.53 0.13 1.43 16 22 O -0.35 -14.51 9.71 -92.98 -0.90 -15.42 16 23 C 0.04 1.56 11.13 113.37 1.26 2.82 16 24 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.05 1.74 8.03 -2.39 -0.02 1.72 16 32 H 0.05 1.59 8.08 -2.39 -0.02 1.57 16 33 H 0.24 12.79 8.31 -92.70 -0.77 12.02 16 34 H 0.04 1.65 8.06 -2.39 -0.02 1.63 16 35 H 0.06 3.05 6.10 -2.38 -0.01 3.04 16 36 H 0.12 5.23 6.20 -2.91 -0.02 5.21 16 37 H 0.15 4.20 8.06 -2.91 -0.02 4.17 16 38 H 0.15 4.25 8.06 -2.91 -0.02 4.22 16 39 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 40 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.04 1.65 7.78 -2.39 -0.02 1.63 16 Total: -1.00 -55.10 339.78 7.35 -47.75 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 1.00 Total: 14.06 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 5.22 Total: -12.06 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -0.76 Total: -73.98 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.90 Total: -15.42 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.77 Total: -5.20 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -55.10 7.35 -47.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143530347.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.305 kcal (2) G-P(sol) polarization free energy of solvation -55.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds