Wall clock time and date at job start Tue Mar 31 2020 05:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47031 * 2 1 4 4 N 1.46899 * 109.46994 * 182.29675 * 3 2 1 5 5 C 1.46905 * 110.99823 * 299.26710 * 4 3 2 6 6 C 1.50698 * 109.47213 * 288.77828 * 5 4 3 7 7 H 1.08008 * 119.99866 * 1.53414 * 6 5 4 8 8 C 1.37873 * 120.00292 * 181.54024 * 6 5 4 9 9 N 1.31515 * 119.99997 * 180.02562 * 8 6 5 10 10 Si 1.86806 * 119.99773 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46631 * 90.00580 * 10 8 6 12 12 H 1.48497 * 109.46927 * 210.00071 * 10 8 6 13 13 H 1.48493 * 109.47251 * 330.00596 * 10 8 6 14 14 C 1.46902 * 110.99837 * 63.21850 * 4 3 2 15 15 C 1.50700 * 109.47046 * 66.05102 * 14 4 3 16 16 C 1.38228 * 120.01024 * 260.01852 * 15 14 4 17 17 C 1.38219 * 120.09248 * 180.02562 * 16 15 14 18 18 C 1.38306 * 120.12815 * 359.96426 * 17 16 15 19 19 C 1.38286 * 120.02477 * 359.97438 * 18 17 16 20 20 F 1.35104 * 120.04254 * 180.02562 * 19 18 17 21 21 C 1.38612 * 120.01735 * 79.99600 * 15 14 4 22 22 O 1.35956 * 120.06338 * 0.25345 * 21 15 14 23 23 C 1.42904 * 116.99813 * 269.72209 * 22 21 15 24 24 H 1.09000 * 109.47099 * 299.99563 * 1 2 3 25 25 H 1.09002 * 109.47471 * 59.99680 * 1 2 3 26 26 H 1.08996 * 109.47217 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46677 * 240.00104 * 2 1 3 28 28 H 1.08992 * 109.47405 * 120.00335 * 2 1 3 29 29 H 1.09004 * 109.47014 * 62.29800 * 3 2 1 30 30 H 1.09003 * 109.47191 * 302.29853 * 3 2 1 31 31 H 1.09001 * 109.47255 * 48.78213 * 5 4 3 32 32 H 1.09001 * 109.46782 * 168.78029 * 5 4 3 33 33 H 0.97000 * 119.99778 * 179.97438 * 9 8 6 34 34 H 1.08993 * 109.47370 * 306.04236 * 14 4 3 35 35 H 1.09003 * 109.46782 * 186.04762 * 14 4 3 36 36 H 1.07997 * 119.95361 * 0.02603 * 16 15 14 37 37 H 1.08002 * 119.93368 * 179.97438 * 17 16 15 38 38 H 1.07993 * 119.98719 * 180.02562 * 18 17 16 39 39 H 1.09000 * 109.47162 * 299.99815 * 23 22 21 40 40 H 1.08994 * 109.47251 * 60.00272 * 23 22 21 41 41 H 1.09008 * 109.46478 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5079 1.4429 -0.0555 5 6 4.0790 0.7566 1.1111 6 6 3.8782 1.6043 2.3407 7 1 3.3546 2.5462 2.2677 8 6 4.3628 1.1778 3.5589 9 7 4.1870 1.9174 4.6321 10 14 5.2679 -0.4515 3.6854 11 1 6.7197 -0.2295 3.4657 12 1 5.0547 -1.0326 5.0352 13 1 4.7489 -1.3873 2.6558 14 6 3.9876 0.8415 -1.3070 15 6 3.5847 1.7119 -2.4693 16 6 2.4812 1.3792 -3.2324 17 6 2.1105 2.1761 -4.2992 18 6 2.8417 3.3092 -4.6063 19 6 3.9458 3.6475 -3.8455 20 9 4.6600 4.7546 -4.1449 21 6 4.3202 2.8468 -2.7734 22 8 5.4086 3.1732 -2.0270 23 6 5.1901 4.0210 -0.8975 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.7107 1.9443 0.9099 30 1 1.6434 1.9681 -0.8687 31 1 3.5821 -0.2040 1.2469 32 1 5.1451 0.5948 0.9515 33 1 4.5277 1.6171 5.4892 34 1 3.5488 -0.1492 -1.4256 35 1 5.0738 0.7563 -1.2762 36 1 1.9079 0.4954 -2.9948 37 1 1.2481 1.9135 -4.8940 38 1 2.5498 3.9304 -5.4400 39 1 4.7687 4.9692 -1.2310 40 1 4.4972 3.5375 -0.2090 41 1 6.1382 4.2031 -0.3912 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143533389.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:29 Heat of formation + Delta-G solvation = -52.321518 kcal Electronic energy + Delta-G solvation = -23047.742742 eV Core-core repulsion = 19649.772307 eV Total energy + Delta-G solvation = -3397.970435 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.75795 -39.91388 -37.48359 -36.96384 -32.83101 -32.54232 -31.05342 -29.93276 -27.82343 -26.59968 -26.07832 -23.94326 -22.39349 -22.05596 -21.46981 -19.26882 -17.66334 -16.99947 -16.78965 -16.54372 -15.88017 -15.15901 -14.94850 -14.84024 -14.55825 -14.28652 -14.05550 -13.84225 -13.51098 -13.19432 -12.91829 -12.52036 -12.15129 -12.01000 -11.81150 -11.71457 -11.45469 -11.31027 -11.15386 -10.96535 -10.88390 -10.59342 -10.41680 -9.93907 -9.90997 -9.56120 -9.34046 -8.71768 -8.58378 -8.50832 -7.36741 -6.07827 -4.04770 1.12600 1.17399 3.26208 3.33917 3.35176 3.41416 4.06038 4.31204 4.39299 4.71508 4.77646 4.97913 5.19946 5.24084 5.26644 5.38524 5.39464 5.58471 5.68104 5.70172 5.76211 5.91677 5.98078 6.01936 6.03910 6.11826 6.19179 6.26660 6.31034 6.39409 6.44965 6.52971 6.55540 6.74879 6.77145 6.90321 6.99759 7.56800 7.75156 7.83113 7.97394 8.61506 9.00479 9.54127 11.05199 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018259 B = 0.005843 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.112255 B = 4790.777300 C = 5732.962359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.164 4.164 3 C 0.061 3.939 4 N -0.517 5.517 5 C 0.158 3.842 6 C -0.504 4.504 7 H 0.080 0.920 8 C 0.070 3.930 9 N -0.900 5.900 10 Si 0.872 3.128 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.268 1.268 14 C 0.085 3.915 15 C -0.057 4.057 16 C -0.113 4.113 17 C -0.103 4.103 18 C -0.151 4.151 19 C 0.072 3.928 20 F -0.137 7.137 21 C 0.090 3.910 22 O -0.331 6.331 23 C 0.029 3.971 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.057 0.943 31 H -0.002 1.002 32 H 0.023 0.977 33 H 0.263 0.737 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.031 0.969 40 H 0.094 0.906 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.740 -1.062 -16.296 17.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.203 4.203 3 C -0.067 4.067 4 N -0.240 5.240 5 C 0.032 3.968 6 C -0.543 4.543 7 H 0.098 0.902 8 C -0.132 4.132 9 N -0.539 5.539 10 Si 0.699 3.301 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.193 1.193 14 C -0.043 4.043 15 C -0.059 4.059 16 C -0.132 4.132 17 C -0.121 4.121 18 C -0.170 4.170 19 C 0.053 3.947 20 F -0.116 7.116 21 C 0.044 3.956 22 O -0.247 6.247 23 C -0.064 4.064 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.016 0.984 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.103 0.897 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.050 0.950 40 H 0.113 0.887 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.296 -0.568 -16.084 16.657 hybrid contribution 0.228 -1.343 0.194 1.376 sum -4.068 -1.911 -15.890 16.513 Atomic orbital electron populations 1.21651 0.96150 1.00791 1.01525 1.22180 0.95903 1.00267 1.01921 1.22137 0.87814 0.94573 1.02160 1.62236 1.06904 1.54061 1.00756 1.20277 0.94275 0.93552 0.88727 1.20960 1.36666 1.06830 0.89805 0.90231 1.24865 0.95845 0.96716 0.95748 1.69887 1.46726 1.37848 0.99424 0.86921 0.80781 0.84927 0.77466 1.20169 1.21302 1.19332 1.21060 1.01126 0.93797 0.88332 1.20173 0.93607 0.95441 0.96634 1.21073 0.96357 1.00448 0.95306 1.20921 0.99568 0.94153 0.97433 1.20992 0.95403 0.99456 1.01117 1.18158 0.93095 0.85258 0.98219 1.91473 1.77164 1.50258 1.92657 1.18502 0.90541 0.94081 0.92457 1.85944 1.28070 1.69055 1.41661 1.23300 1.04265 0.92019 0.86850 0.92538 0.93331 0.93546 0.92924 0.90913 0.89674 0.92444 0.98416 0.95943 0.92692 0.93921 0.89699 0.85297 0.85120 0.84837 0.95020 0.88710 0.89240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.91 37.16 0.37 -1.51 16 2 C -0.16 -2.55 5.29 -26.73 -0.14 -2.69 16 3 C 0.06 1.07 4.96 -3.82 -0.02 1.05 16 4 N -0.52 -9.90 2.88 -237.51 -0.68 -10.59 16 5 C 0.16 3.56 3.63 -4.97 -0.02 3.55 16 6 C -0.50 -13.52 9.15 -34.44 -0.32 -13.83 16 7 H 0.08 2.33 7.65 -52.48 -0.40 1.93 16 8 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 9 N -0.90 -26.80 13.96 55.43 0.77 -26.02 16 10 Si 0.87 20.95 27.44 -169.99 -4.66 16.29 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.27 -6.20 6.59 56.52 0.37 -5.82 16 14 C 0.08 1.40 4.56 -4.97 -0.02 1.38 16 15 C -0.06 -0.86 4.59 -104.49 -0.48 -1.34 16 16 C -0.11 -1.39 8.64 -39.59 -0.34 -1.73 16 17 C -0.10 -1.10 10.04 -39.56 -0.40 -1.49 16 18 C -0.15 -1.78 10.02 -39.54 -0.40 -2.17 16 19 C 0.07 1.07 7.31 -39.30 -0.29 0.79 16 20 F -0.14 -2.14 17.11 2.25 0.04 -2.10 16 21 C 0.09 1.46 5.70 -39.18 -0.22 1.24 16 22 O -0.33 -5.91 9.51 -19.60 -0.19 -6.10 16 23 C 0.03 0.50 11.13 101.05 1.12 1.63 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.75 5.99 -51.93 -0.31 0.44 16 28 H 0.07 1.32 6.31 -51.93 -0.33 0.99 16 29 H 0.08 1.70 7.18 -51.93 -0.37 1.33 16 30 H 0.06 0.92 6.46 -51.93 -0.34 0.58 16 31 H 0.00 -0.04 5.02 -51.93 -0.26 -0.30 16 32 H 0.02 0.52 7.17 -51.93 -0.37 0.15 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.04 0.65 5.92 -51.93 -0.31 0.35 16 35 H 0.08 1.49 7.58 -51.93 -0.39 1.09 16 36 H 0.13 1.38 7.79 -52.49 -0.41 0.97 16 37 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.09 1.83 6.28 -51.93 -0.33 1.50 16 41 H 0.09 1.43 8.14 -51.92 -0.42 1.00 16 LS Contribution 330.60 15.07 4.98 4.98 Total: -1.00 -29.24 330.60 -6.93 -36.17 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.94 Total: 0.67 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -1.25 Total: -13.30 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.09 Total: -36.61 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.19 Total: -6.10 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.66 Total: 16.29 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.24 -6.93 -36.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143533389.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.154 kcal (2) G-P(sol) polarization free energy of solvation -29.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds