Wall clock time and date at job start Tue Mar 31 2020 05:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46758 * 2 1 4 4 C 1.53004 * 109.46932 * 185.00253 * 3 2 1 5 5 C 1.53000 * 109.46932 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.46905 * 304.99627 * 3 2 1 7 7 C 1.34777 * 120.00175 * 299.99807 * 6 3 2 8 8 O 1.21281 * 119.99720 * 0.02562 * 7 6 3 9 9 C 1.50699 * 119.99865 * 180.27501 * 7 6 3 10 10 H 1.09002 * 109.46925 * 59.72622 * 9 7 6 11 11 C 1.53004 * 109.47210 * 299.72837 * 9 7 6 12 12 C 1.50696 * 109.47183 * 179.73222 * 9 7 6 13 13 H 1.07997 * 120.00290 * 35.10266 * 12 9 7 14 14 C 1.37879 * 120.00007 * 215.11026 * 12 9 7 15 15 N 1.31511 * 119.99874 * 184.90753 * 14 12 9 16 16 Si 1.86801 * 119.99818 * 4.90062 * 14 12 9 17 17 H 1.48502 * 109.46964 * 84.83020 * 16 14 12 18 18 H 1.48508 * 109.46923 * 204.82492 * 16 14 12 19 19 H 1.48495 * 109.47445 * 324.82464 * 16 14 12 20 20 C 1.50697 * 109.47617 * 64.99964 * 3 2 1 21 21 N 1.33320 * 126.54588 * 4.68984 * 20 3 2 22 22 N 1.29001 * 107.35313 * 179.83686 * 21 20 3 23 23 N 1.28777 * 108.72487 * 0.42955 * 22 21 20 24 24 H 0.97000 * 125.45170 * 179.72653 * 23 22 21 25 25 N 1.28885 * 109.10345 * 359.72809 * 23 22 21 26 26 H 1.09002 * 109.46950 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47167 * 300.00104 * 1 2 3 28 28 H 1.08997 * 109.47101 * 60.00417 * 1 2 3 29 29 H 1.09000 * 109.47167 * 239.99896 * 2 1 3 30 30 H 1.08997 * 109.47101 * 119.99583 * 2 1 3 31 31 H 1.08995 * 109.46596 * 299.99368 * 4 3 2 32 32 H 1.08988 * 109.47393 * 59.99792 * 4 3 2 33 33 H 1.09002 * 109.47283 * 59.99664 * 5 4 3 34 34 H 1.09001 * 109.46925 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47207 * 299.99555 * 5 4 3 36 36 H 0.96999 * 119.99765 * 120.00614 * 6 3 2 37 37 H 1.08993 * 109.47430 * 295.07251 * 11 9 7 38 38 H 1.09007 * 109.46994 * 55.07622 * 11 9 7 39 39 H 1.08994 * 109.47170 * 175.07017 * 11 9 7 40 40 H 0.97001 * 119.99567 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5648 1.4444 -0.1258 5 6 4.0747 2.8869 -0.1251 6 7 1.4557 2.1669 -1.1315 7 6 1.6792 1.7426 -2.3911 8 8 2.3635 0.7608 -2.5878 9 6 1.0834 2.4914 -3.5553 10 1 1.4474 3.5188 -3.5510 11 6 -0.4420 2.4904 -3.4355 12 6 1.4865 1.8208 -4.8432 13 1 1.5858 0.7462 -4.8844 14 6 1.7287 2.5792 -5.9689 15 7 1.9858 1.9897 -7.1160 16 14 1.6912 4.4439 -5.8647 17 1 3.0160 4.9411 -5.4140 18 1 1.3797 5.0083 -7.2025 19 1 0.6484 4.8647 -4.8948 20 6 1.6412 2.1164 1.2876 21 7 1.0288 1.5462 2.3255 22 7 0.8690 2.4564 3.2255 23 7 1.3493 3.5657 2.7815 24 1 1.3525 4.4092 3.2604 25 7 1.8251 3.3759 1.5988 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9993 0.9055 0.7161 32 1 3.8531 0.9571 -1.0571 33 1 3.7863 3.3739 0.8065 34 1 5.1611 2.8882 -0.2143 35 1 3.6401 3.4263 -0.9667 36 1 0.9082 2.9520 -0.9742 37 1 -0.8130 1.4697 -3.5275 38 1 -0.7306 2.8959 -2.4657 39 1 -0.8690 3.1050 -4.2279 40 1 2.1558 2.5233 -7.9081 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156920482.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:26 Heat of formation + Delta-G solvation = 84.076957 kcal Electronic energy + Delta-G solvation = -23532.042557 eV Core-core repulsion = 20192.199516 eV Total energy + Delta-G solvation = -3339.843041 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.66083 -39.78831 -36.68036 -34.35100 -33.66461 -32.67467 -31.97370 -31.87794 -30.75261 -26.77270 -25.24436 -24.61721 -23.90957 -22.80511 -21.76631 -20.56878 -19.06088 -18.75273 -17.32194 -16.98835 -16.91816 -15.18132 -14.97154 -14.60471 -14.26008 -13.83217 -13.68596 -13.36645 -13.22270 -12.83550 -12.60543 -12.43192 -12.24432 -12.14530 -11.60044 -11.51750 -11.40411 -11.15546 -11.14817 -11.01275 -10.79617 -10.75710 -10.65558 -10.64271 -10.37750 -10.16111 -9.81314 -9.16326 -8.62009 -8.51882 -8.47145 -6.06016 -4.04940 0.97602 1.89654 2.13995 3.24323 3.31019 3.33995 3.53664 3.61610 3.78621 4.31311 4.38819 4.81472 5.18249 5.21227 5.26195 5.42183 5.48191 5.58610 5.66218 5.74122 5.93573 6.03442 6.08965 6.13851 6.16037 6.26463 6.28768 6.38632 6.42515 6.47463 6.54066 6.58172 6.65569 6.83644 6.97348 7.18487 7.56242 8.07571 8.14897 8.54649 9.10243 9.15295 9.53924 11.07185 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.023786 B = 0.005439 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.863225 B = 5146.544092 C = 5362.426981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C 0.281 3.719 4 C -0.134 4.134 5 C -0.152 4.152 6 N -0.735 5.735 7 C 0.529 3.471 8 O -0.520 6.520 9 C -0.003 4.003 10 H 0.053 0.947 11 C -0.134 4.134 12 C -0.492 4.492 13 H 0.087 0.913 14 C 0.072 3.928 15 N -0.894 5.894 16 Si 0.869 3.131 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.265 1.265 20 C 0.181 3.819 21 N -0.259 5.259 22 N -0.059 5.059 23 N -0.236 5.236 24 H 0.472 0.528 25 N -0.286 5.286 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.394 0.606 37 H 0.053 0.947 38 H 0.024 0.976 39 H 0.053 0.947 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.500 4.810 19.559 20.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C 0.191 3.809 4 C -0.173 4.173 5 C -0.209 4.209 6 N -0.391 5.391 7 C 0.317 3.683 8 O -0.393 6.393 9 C -0.025 4.025 10 H 0.071 0.929 11 C -0.192 4.192 12 C -0.530 4.530 13 H 0.105 0.895 14 C -0.129 4.129 15 N -0.532 5.532 16 Si 0.696 3.304 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.190 1.190 20 C -0.103 4.103 21 N -0.132 5.132 22 N -0.054 5.054 23 N -0.081 5.081 24 H 0.326 0.674 25 N -0.137 5.137 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.228 0.772 37 H 0.072 0.928 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.207 4.102 19.753 20.211 hybrid contribution -0.048 2.128 0.027 2.129 sum -1.255 6.230 19.780 20.776 Atomic orbital electron populations 1.21748 0.95283 1.01644 1.01863 1.21881 0.96991 0.93641 1.04074 1.18530 0.93905 0.91005 0.77462 1.21994 0.92085 0.98672 1.04587 1.21832 1.00357 0.96218 1.02511 1.46421 1.55085 1.32405 1.05188 1.21663 0.79393 0.84789 0.82405 1.90522 1.37749 1.26470 1.84572 1.19346 0.93412 0.96632 0.93101 0.92882 1.21963 0.97178 1.01514 0.98555 1.20728 1.45605 0.96204 0.90465 0.89456 1.25012 0.94688 0.97902 0.95332 1.69880 1.48035 1.35567 0.99722 0.87002 0.78942 0.86943 0.77504 1.20121 1.21327 1.19017 1.25773 0.98517 0.87108 0.98852 1.75915 1.15381 1.22756 0.99169 1.78969 1.14965 0.89826 1.21642 1.47881 1.36994 1.12867 1.10359 0.67399 1.74820 1.19359 1.20139 0.99381 0.92809 0.92569 0.92496 0.88286 0.91066 0.91739 0.87573 0.92357 0.93001 0.92039 0.77187 0.92776 0.95711 0.92764 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.47 37.16 0.35 -1.78 16 2 C -0.13 -1.90 4.38 -26.73 -0.12 -2.01 16 3 C 0.28 4.13 0.42 -132.97 -0.06 4.07 16 4 C -0.13 -1.98 4.77 -26.73 -0.13 -2.11 16 5 C -0.15 -2.11 9.36 37.16 0.35 -1.76 16 6 N -0.74 -11.89 3.27 -48.68 -0.16 -12.05 16 7 C 0.53 10.86 6.35 -10.99 -0.07 10.79 16 8 O -0.52 -12.20 12.03 5.56 0.07 -12.14 16 9 C 0.00 -0.07 2.30 -92.92 -0.21 -0.28 16 10 H 0.05 1.17 5.29 -51.93 -0.27 0.90 16 11 C -0.13 -2.62 9.12 37.16 0.34 -2.28 16 12 C -0.49 -13.67 8.36 -34.44 -0.29 -13.96 16 13 H 0.09 2.75 7.61 -52.49 -0.40 2.35 16 14 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 15 N -0.89 -27.13 13.96 55.43 0.77 -26.36 16 16 Si 0.87 20.65 26.99 -169.99 -4.59 16.06 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -5.83 6.82 56.52 0.39 -5.44 16 20 C 0.18 2.38 5.88 -156.63 -0.92 1.46 16 21 N -0.26 -3.42 10.19 32.44 0.33 -3.09 16 22 N -0.06 -0.65 13.48 60.35 0.81 0.16 16 23 N -0.24 -2.01 7.91 60.34 0.48 -1.54 16 24 H 0.47 1.76 8.96 -340.53 -3.05 -1.29 16 25 N -0.29 -3.25 10.02 32.46 0.33 -2.92 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.78 6.13 -51.93 -0.32 0.47 16 28 H 0.06 0.89 7.29 -51.93 -0.38 0.51 16 29 H 0.10 1.71 6.32 -51.93 -0.33 1.38 16 30 H 0.07 0.97 8.05 -51.93 -0.42 0.55 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.11 1.85 6.17 -51.94 -0.32 1.53 16 33 H 0.06 0.74 5.69 -51.93 -0.30 0.45 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.95 7.61 -51.93 -0.39 0.55 16 36 H 0.39 5.79 7.83 -40.82 -0.32 5.47 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.02 0.39 7.44 -51.93 -0.39 0.00 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 318.17 15.07 4.79 4.79 Total: -1.00 -32.49 318.17 -6.17 -38.66 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -8.15 Total: 4.33 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -0.85 Total: -5.90 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 2.56 Total: -45.80 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.07 Total: -12.14 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.59 Total: 16.06 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.49 -6.17 -38.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156920482.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.735 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds