Wall clock time and date at job start Tue Mar 31 2020 05:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46758 * 2 1 4 4 C 1.53004 * 109.46932 * 185.00253 * 3 2 1 5 5 C 1.53000 * 109.46932 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.46905 * 304.99627 * 3 2 1 7 7 C 1.34777 * 120.00175 * 299.99807 * 6 3 2 8 8 O 1.21281 * 119.99720 * 0.02562 * 7 6 3 9 9 C 1.50699 * 119.99865 * 180.27501 * 7 6 3 10 10 H 1.09002 * 109.46925 * 59.72622 * 9 7 6 11 11 C 1.53004 * 109.47210 * 299.72837 * 9 7 6 12 12 C 1.50696 * 109.47183 * 179.73222 * 9 7 6 13 13 H 1.07997 * 120.00290 * 35.10266 * 12 9 7 14 14 C 1.37879 * 120.00007 * 215.11026 * 12 9 7 15 15 N 1.31511 * 119.99874 * 184.90753 * 14 12 9 16 16 Si 1.86801 * 119.99818 * 4.90062 * 14 12 9 17 17 H 1.48502 * 109.46964 * 84.83020 * 16 14 12 18 18 H 1.48508 * 109.46923 * 204.82492 * 16 14 12 19 19 H 1.48495 * 109.47445 * 324.82464 * 16 14 12 20 20 C 1.50697 * 109.47617 * 64.99964 * 3 2 1 21 21 N 1.33320 * 126.54588 * 4.68984 * 20 3 2 22 22 N 1.29001 * 107.35313 * 179.83686 * 21 20 3 23 23 N 1.28777 * 108.72487 * 0.42955 * 22 21 20 24 24 H 0.97000 * 125.45170 * 179.72653 * 23 22 21 25 25 N 1.28885 * 109.10345 * 359.72809 * 23 22 21 26 26 H 1.09002 * 109.46950 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47167 * 300.00104 * 1 2 3 28 28 H 1.08997 * 109.47101 * 60.00417 * 1 2 3 29 29 H 1.09000 * 109.47167 * 239.99896 * 2 1 3 30 30 H 1.08997 * 109.47101 * 119.99583 * 2 1 3 31 31 H 1.08995 * 109.46596 * 299.99368 * 4 3 2 32 32 H 1.08988 * 109.47393 * 59.99792 * 4 3 2 33 33 H 1.09002 * 109.47283 * 59.99664 * 5 4 3 34 34 H 1.09001 * 109.46925 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47207 * 299.99555 * 5 4 3 36 36 H 0.96999 * 119.99765 * 120.00614 * 6 3 2 37 37 H 1.08993 * 109.47430 * 295.07251 * 11 9 7 38 38 H 1.09007 * 109.46994 * 55.07622 * 11 9 7 39 39 H 1.08994 * 109.47170 * 175.07017 * 11 9 7 40 40 H 0.97001 * 119.99567 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5648 1.4444 -0.1258 5 6 4.0747 2.8869 -0.1251 6 7 1.4557 2.1669 -1.1315 7 6 1.6792 1.7426 -2.3911 8 8 2.3635 0.7608 -2.5878 9 6 1.0834 2.4914 -3.5553 10 1 1.4474 3.5188 -3.5510 11 6 -0.4420 2.4904 -3.4355 12 6 1.4865 1.8208 -4.8432 13 1 1.5858 0.7462 -4.8844 14 6 1.7287 2.5792 -5.9689 15 7 1.9858 1.9897 -7.1160 16 14 1.6912 4.4439 -5.8647 17 1 3.0160 4.9411 -5.4140 18 1 1.3797 5.0083 -7.2025 19 1 0.6484 4.8647 -4.8948 20 6 1.6412 2.1164 1.2876 21 7 1.0288 1.5462 2.3255 22 7 0.8690 2.4564 3.2255 23 7 1.3493 3.5657 2.7815 24 1 1.3525 4.4092 3.2604 25 7 1.8251 3.3759 1.5988 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9993 0.9055 0.7161 32 1 3.8531 0.9571 -1.0571 33 1 3.7863 3.3739 0.8065 34 1 5.1611 2.8882 -0.2143 35 1 3.6401 3.4263 -0.9667 36 1 0.9082 2.9520 -0.9742 37 1 -0.8130 1.4697 -3.5275 38 1 -0.7306 2.8959 -2.4657 39 1 -0.8690 3.1050 -4.2279 40 1 2.1558 2.5233 -7.9081 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156920482.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:26 Heat of formation + Delta-G solvation = 59.894427 kcal Electronic energy + Delta-G solvation = -23533.091190 eV Core-core repulsion = 20192.199516 eV Total energy + Delta-G solvation = -3340.891674 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.56022 -41.25200 -38.10369 -35.57269 -35.27261 -33.97505 -33.44043 -33.01349 -32.40391 -27.96059 -27.17148 -25.53924 -24.97761 -24.41772 -22.93806 -21.87612 -20.35627 -19.92355 -19.02704 -18.41708 -18.12404 -16.69541 -16.38876 -16.29837 -15.59973 -15.21889 -14.95424 -14.66874 -14.53712 -14.38143 -14.18985 -13.91552 -13.68147 -13.17644 -13.05417 -12.93564 -12.62480 -12.57004 -12.53178 -12.22651 -12.20053 -12.06612 -11.87953 -11.82037 -11.76554 -11.71091 -11.35156 -11.20107 -10.70798 -10.18206 -9.94202 -8.22778 -6.28029 0.12073 0.88293 1.37826 1.40117 1.45687 1.49834 1.98141 2.27739 2.38294 2.69525 3.13057 3.29513 3.65215 4.04446 4.11628 4.27528 4.34655 4.43887 4.47046 4.49166 4.54883 4.58018 4.76171 4.82653 4.89779 4.92785 5.02643 5.11994 5.16058 5.23053 5.27098 5.37638 5.44939 5.52796 5.61786 5.62680 5.69513 6.30215 6.69545 6.88540 7.18709 7.33285 7.58689 8.94915 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.023786 B = 0.005439 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.863225 B = 5146.544092 C = 5362.426981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C 0.283 3.717 4 C -0.134 4.134 5 C -0.146 4.146 6 N -0.715 5.715 7 C 0.533 3.467 8 O -0.558 6.558 9 C -0.008 4.008 10 H 0.067 0.933 11 C -0.127 4.127 12 C -0.498 4.498 13 H 0.028 0.972 14 C 0.008 3.992 15 N -0.951 5.951 16 Si 0.940 3.060 17 H -0.269 1.269 18 H -0.288 1.288 19 H -0.227 1.227 20 C 0.172 3.828 21 N -0.277 5.277 22 N -0.058 5.058 23 N -0.203 5.203 24 H 0.493 0.507 25 N -0.282 5.282 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.044 0.956 36 H 0.406 0.594 37 H 0.040 0.960 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.369 7.771 22.657 24.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C 0.193 3.807 4 C -0.173 4.173 5 C -0.203 4.203 6 N -0.370 5.370 7 C 0.322 3.678 8 O -0.434 6.434 9 C -0.030 4.030 10 H 0.085 0.915 11 C -0.185 4.185 12 C -0.536 4.536 13 H 0.046 0.954 14 C -0.188 4.188 15 N -0.591 5.591 16 Si 0.762 3.238 17 H -0.195 1.195 18 H -0.214 1.214 19 H -0.150 1.150 20 C -0.112 4.112 21 N -0.150 5.150 22 N -0.052 5.052 23 N -0.054 5.054 24 H 0.352 0.648 25 N -0.135 5.135 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.242 0.758 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.111 7.093 22.930 24.095 hybrid contribution 0.239 1.135 -0.830 1.426 sum -1.872 8.228 22.100 23.656 Atomic orbital electron populations 1.21692 0.94708 1.02079 1.01440 1.21812 0.97433 0.93852 1.03284 1.18410 0.93743 0.90808 0.77696 1.21942 0.92365 0.99384 1.03636 1.21788 1.00762 0.95232 1.02560 1.46036 1.54313 1.32336 1.04307 1.21189 0.78991 0.84175 0.83494 1.90533 1.39447 1.28105 1.85343 1.19319 0.95564 0.96746 0.91366 0.91473 1.21833 0.94448 1.01225 1.01044 1.20846 1.45459 0.93888 0.93431 0.95353 1.25988 0.94214 1.04104 0.94505 1.70068 1.50184 1.38021 1.00845 0.85862 0.80244 0.79269 0.78390 1.19453 1.21386 1.14953 1.25226 0.99848 0.87711 0.98382 1.75907 1.15985 1.23655 0.99405 1.78939 1.15029 0.90135 1.21146 1.47917 1.34798 1.13305 1.09367 0.64804 1.74761 1.19255 1.19185 1.00264 0.92145 0.91589 0.94019 0.91274 0.89588 0.89997 0.90814 0.90733 0.92267 0.93654 0.75823 0.94085 0.91381 0.92668 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.47 71.98 0.68 -3.25 16 2 C -0.12 -3.68 4.38 30.59 0.13 -3.54 16 3 C 0.28 7.93 0.42 2.86 0.00 7.93 16 4 C -0.13 -3.85 4.77 30.60 0.15 -3.71 16 5 C -0.15 -3.78 9.36 71.98 0.67 -3.11 16 6 N -0.72 -22.08 3.27 -426.32 -1.39 -23.47 16 7 C 0.53 22.00 6.35 87.66 0.56 22.56 16 8 O -0.56 -27.44 12.03 -3.03 -0.04 -27.48 16 9 C -0.01 -0.36 2.30 -12.29 -0.03 -0.39 16 10 H 0.07 2.79 5.29 -2.39 -0.01 2.77 16 11 C -0.13 -4.74 9.12 71.98 0.66 -4.08 16 12 C -0.50 -28.75 8.36 25.60 0.21 -28.53 16 13 H 0.03 1.92 7.61 -2.91 -0.02 1.90 16 14 C 0.01 0.48 5.47 84.66 0.46 0.95 16 15 N -0.95 -60.22 13.96 21.45 0.30 -59.92 16 16 Si 0.94 42.06 26.99 68.60 1.85 43.91 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.23 -8.70 6.82 99.48 0.68 -8.02 16 20 C 0.17 4.03 5.88 138.55 0.81 4.84 16 21 N -0.28 -6.49 10.19 -51.26 -0.52 -7.01 16 22 N -0.06 -1.07 13.48 37.02 0.50 -0.57 16 23 N -0.20 -2.63 7.91 37.00 0.29 -2.34 16 24 H 0.49 1.46 8.96 -347.67 -3.12 -1.66 16 25 N -0.28 -5.35 10.02 -51.20 -0.51 -5.86 16 26 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.07 1.70 6.13 -2.39 -0.01 1.69 16 28 H 0.04 1.26 7.29 -2.39 -0.02 1.24 16 29 H 0.07 2.48 6.32 -2.39 -0.02 2.47 16 30 H 0.09 2.25 8.05 -2.39 -0.02 2.23 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.07 2.65 6.17 -2.39 -0.01 2.63 16 33 H 0.07 1.67 5.69 -2.39 -0.01 1.65 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.04 1.31 7.61 -2.39 -0.02 1.29 16 36 H 0.41 10.67 7.83 -92.71 -0.73 9.94 16 37 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 1.93 7.44 -2.38 -0.02 1.91 16 39 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -74.75 318.17 2.01 -72.74 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -2.78 Total: 20.33 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: 4.31 Total: -10.33 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -1.34 Total: -99.17 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.04 Total: -27.48 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.85 Total: 43.91 kcal Total: -74.75 2.01 -72.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156920482.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.635 kcal (2) G-P(sol) polarization free energy of solvation -74.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds