Wall clock time and date at job start Tue Mar 31 2020 05:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46955 * 2 1 4 4 C 1.53002 * 109.46607 * 185.00320 * 3 2 1 5 5 C 1.53004 * 109.46607 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47024 * 304.99865 * 3 2 1 7 7 C 1.34775 * 120.00181 * 300.00369 * 6 3 2 8 8 O 1.21283 * 119.99917 * 359.97438 * 7 6 3 9 9 C 1.50703 * 120.00072 * 180.02562 * 7 6 3 10 10 H 1.09007 * 109.46560 * 299.99774 * 9 7 6 11 11 C 1.52998 * 109.47077 * 59.99775 * 9 7 6 12 12 C 1.50701 * 109.47151 * 180.02562 * 9 7 6 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 9 7 14 14 C 1.37871 * 119.99694 * 180.27762 * 12 9 7 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 9 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 9 17 17 H 1.48494 * 109.47230 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47301 * 119.99669 * 16 14 12 19 19 H 1.48498 * 109.47430 * 239.99516 * 16 14 12 20 20 C 1.50700 * 109.47218 * 65.00029 * 3 2 1 21 21 N 1.33316 * 126.54455 * 4.68902 * 20 3 2 22 22 N 1.29001 * 107.35002 * 179.83429 * 21 20 3 23 23 N 1.28789 * 108.72385 * 0.43084 * 22 21 20 24 24 H 0.97004 * 125.44739 * 179.72942 * 23 22 21 25 25 N 1.28882 * 109.10345 * 359.72690 * 23 22 21 26 26 H 1.09002 * 109.47586 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47196 * 299.99987 * 1 2 3 28 28 H 1.08994 * 109.47495 * 60.00027 * 1 2 3 29 29 H 1.08998 * 109.46532 * 240.00122 * 2 1 3 30 30 H 1.09002 * 109.46899 * 119.99946 * 2 1 3 31 31 H 1.08998 * 109.46740 * 299.99560 * 4 3 2 32 32 H 1.08991 * 109.47084 * 60.00048 * 4 3 2 33 33 H 1.08998 * 109.46853 * 179.97438 * 5 4 3 34 34 H 1.08990 * 109.46920 * 299.99861 * 5 4 3 35 35 H 1.09005 * 109.46997 * 59.99764 * 5 4 3 36 36 H 0.97002 * 119.99778 * 120.00042 * 6 3 2 37 37 H 1.08998 * 109.47156 * 59.99979 * 11 9 7 38 38 H 1.09004 * 109.46783 * 180.02562 * 11 9 7 39 39 H 1.09005 * 109.46870 * 300.00040 * 11 9 7 40 40 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5648 1.4443 -0.1258 5 6 4.0747 2.8869 -0.1265 6 7 1.4558 2.1670 -1.1314 7 6 1.6791 1.7426 -2.3910 8 8 2.3641 0.7613 -2.5878 9 6 1.0787 2.4882 -3.5549 10 1 -0.0077 2.4873 -3.4654 11 6 1.5893 3.9305 -3.5548 12 6 1.4767 1.8140 -4.8426 13 1 2.1023 0.9339 -4.8203 14 6 1.0474 2.3244 -6.0492 15 7 0.2859 3.3963 -6.0764 16 14 1.5472 1.4932 -7.6457 17 1 2.3997 0.3152 -7.3447 18 1 0.3316 1.0514 -8.3755 19 1 2.3078 2.4524 -8.4863 20 6 1.6413 2.1163 1.2877 21 7 1.0289 1.5460 2.3255 22 7 0.8691 2.4563 3.2255 23 7 1.3495 3.5656 2.7815 24 1 1.3528 4.4091 3.2606 25 7 1.8253 3.3758 1.5988 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9994 0.9053 0.7160 32 1 3.8531 0.9570 -1.0571 33 1 5.1611 2.8881 -0.2156 34 1 3.6401 3.4254 -0.9684 35 1 3.7863 3.3746 0.8048 36 1 0.9083 2.9521 -0.9740 37 1 2.6756 3.9314 -3.6442 38 1 1.1546 4.4699 -4.3964 39 1 1.3009 4.4179 -2.6233 40 1 -0.0158 3.7555 -6.9253 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156920483.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:28 Heat of formation + Delta-G solvation = 81.848519 kcal Electronic energy + Delta-G solvation = -23459.058356 eV Core-core repulsion = 20119.118683 eV Total energy + Delta-G solvation = -3339.939673 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.60507 -39.69914 -36.60447 -34.29724 -33.72294 -32.60938 -31.85254 -31.82379 -30.04063 -26.68840 -25.11475 -24.55484 -23.85835 -22.76614 -21.72547 -20.62129 -19.05996 -18.67185 -17.27040 -16.91732 -16.11353 -15.21017 -14.88923 -14.55939 -14.29172 -13.78271 -13.63020 -13.28290 -13.08447 -12.85551 -12.51398 -12.38106 -12.15376 -11.57980 -11.49241 -11.44492 -11.12338 -11.04719 -10.95375 -10.82425 -10.72673 -10.63153 -10.59440 -10.58362 -10.29254 -10.15292 -9.92701 -8.94308 -8.52853 -8.43863 -8.26983 -6.01397 -4.04242 1.03114 1.95300 2.19522 3.33701 3.41474 3.48912 3.61150 3.71481 3.87466 4.36598 4.49897 4.86235 5.23314 5.28059 5.32546 5.47657 5.52579 5.63687 5.70613 5.78026 6.03039 6.13058 6.15027 6.25718 6.31410 6.33009 6.47843 6.53115 6.61334 6.64196 6.69638 6.85197 6.95064 7.05821 7.49490 7.77441 8.00801 8.13037 8.16741 8.44683 9.05319 9.24421 9.61439 11.06235 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.027575 B = 0.004853 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.178975 B = 5767.948942 C = 5929.441068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C 0.281 3.719 4 C -0.133 4.133 5 C -0.152 4.152 6 N -0.732 5.732 7 C 0.530 3.470 8 O -0.537 6.537 9 C 0.031 3.969 10 H 0.051 0.949 11 C -0.132 4.132 12 C -0.497 4.497 13 H 0.076 0.924 14 C 0.057 3.943 15 N -0.897 5.897 16 Si 0.898 3.102 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.285 1.285 20 C 0.181 3.819 21 N -0.260 5.260 22 N -0.060 5.060 23 N -0.236 5.236 24 H 0.472 0.528 25 N -0.284 5.284 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.396 0.604 37 H 0.032 0.968 38 H 0.092 0.908 39 H 0.011 0.989 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.097 1.901 16.778 17.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C 0.191 3.809 4 C -0.172 4.172 5 C -0.209 4.209 6 N -0.388 5.388 7 C 0.320 3.680 8 O -0.412 6.412 9 C 0.009 3.991 10 H 0.069 0.931 11 C -0.190 4.190 12 C -0.535 4.535 13 H 0.094 0.906 14 C -0.143 4.143 15 N -0.537 5.537 16 Si 0.726 3.274 17 H -0.195 1.195 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.103 4.103 21 N -0.133 5.133 22 N -0.055 5.055 23 N -0.081 5.081 24 H 0.326 0.674 25 N -0.135 5.135 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.230 0.770 37 H 0.051 0.949 38 H 0.111 0.889 39 H 0.030 0.970 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.250 1.285 17.061 17.256 hybrid contribution 0.080 0.735 -0.759 1.060 sum 2.331 2.020 16.302 16.591 Atomic orbital electron populations 1.21742 0.95277 1.01596 1.01907 1.21880 0.96994 0.93744 1.03944 1.18515 0.93863 0.90965 0.77593 1.21981 0.92179 0.98687 1.04374 1.21833 1.00185 0.96205 1.02694 1.46357 1.54969 1.32333 1.05092 1.21863 0.79070 0.84241 0.82831 1.90471 1.38790 1.27151 1.84797 1.18875 0.96919 0.92915 0.90347 0.93149 1.21742 0.99570 0.97482 1.00222 1.21178 1.31239 1.12232 0.88884 0.90590 1.24945 0.95055 0.95054 0.99233 1.69879 1.35693 1.22242 1.25860 0.86422 0.78294 0.79619 0.83062 1.19526 1.21131 1.21151 1.25774 0.98532 0.87124 0.98841 1.75906 1.15403 1.22798 0.99205 1.78964 1.15015 0.89841 1.21663 1.47885 1.36996 1.12856 1.10371 0.67400 1.74830 1.19297 1.20077 0.99300 0.92847 0.92545 0.92513 0.88366 0.91148 0.91894 0.87735 0.93161 0.91767 0.92387 0.76991 0.94928 0.88920 0.97000 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.47 37.16 0.35 -1.87 16 2 C -0.13 -1.95 4.38 -26.73 -0.12 -2.07 16 3 C 0.28 4.27 0.42 -132.97 -0.06 4.21 16 4 C -0.13 -2.00 4.77 -26.73 -0.13 -2.13 16 5 C -0.15 -2.15 9.36 37.16 0.35 -1.80 16 6 N -0.73 -12.44 3.29 -48.68 -0.16 -12.60 16 7 C 0.53 11.26 6.35 -10.98 -0.07 11.19 16 8 O -0.54 -12.61 11.72 5.56 0.07 -12.54 16 9 C 0.03 0.74 2.64 -92.92 -0.25 0.49 16 10 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 11 C -0.13 -2.97 8.86 37.16 0.33 -2.64 16 12 C -0.50 -13.68 8.38 -34.44 -0.29 -13.97 16 13 H 0.08 2.20 6.75 -52.49 -0.35 1.85 16 14 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 15 N -0.90 -24.91 11.31 55.43 0.63 -24.28 16 16 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 C 0.18 2.48 5.88 -156.63 -0.92 1.56 16 21 N -0.26 -3.56 10.19 32.44 0.33 -3.23 16 22 N -0.06 -0.69 13.48 60.35 0.81 0.12 16 23 N -0.24 -2.14 7.91 60.34 0.48 -1.66 16 24 H 0.47 2.00 8.96 -340.51 -3.05 -1.06 16 25 N -0.28 -3.39 10.02 32.46 0.33 -3.07 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.83 6.13 -51.93 -0.32 0.51 16 28 H 0.06 0.94 7.29 -51.93 -0.38 0.57 16 29 H 0.10 1.72 6.32 -51.93 -0.33 1.40 16 30 H 0.07 0.98 8.05 -51.93 -0.42 0.56 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.10 1.83 6.17 -51.93 -0.32 1.51 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 1.02 7.60 -51.93 -0.39 0.63 16 35 H 0.06 0.76 5.70 -51.93 -0.30 0.47 16 36 H 0.40 6.34 7.88 -40.82 -0.32 6.01 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.09 2.32 6.06 -51.93 -0.31 2.00 16 39 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 40 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 318.11 15.07 4.79 4.79 Total: -1.00 -30.66 318.11 -6.78 -37.44 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -8.14 Total: 4.04 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -0.89 Total: -5.55 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 2.41 Total: -44.72 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.07 Total: -12.54 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.66 -6.78 -37.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156920483.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.287 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds