Wall clock time and date at job start Tue Mar 31 2020 05:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46928 * 2 1 4 4 C 1.53000 * 109.47591 * 120.00133 * 2 1 3 5 5 C 1.53001 * 109.47278 * 66.52425 * 4 2 1 6 6 H 1.09001 * 109.46964 * 303.21204 * 5 4 2 7 7 C 1.52993 * 109.47091 * 183.21224 * 5 4 2 8 8 O 1.42908 * 109.47150 * 305.00037 * 7 5 4 9 9 N 1.46499 * 109.46503 * 63.21017 * 5 4 2 10 10 C 1.39885 * 119.99781 * 204.99727 * 9 5 4 11 11 C 1.39096 * 119.96331 * 0.28211 * 10 9 5 12 12 C 1.38615 * 120.46782 * 180.23503 * 11 10 9 13 13 C 1.37572 * 120.38742 * 359.48335 * 12 11 10 14 14 C 1.40785 * 119.90914 * 0.25895 * 13 12 11 15 15 C 1.41322 * 120.23382 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00425 * 154.64414 * 15 14 13 17 17 C 1.39933 * 119.99361 * 334.64693 * 15 14 13 18 18 N 1.30849 * 119.99956 * 343.52854 * 17 15 14 19 19 Si 1.86797 * 119.99560 * 163.53529 * 17 15 14 20 20 H 1.48496 * 109.47747 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47247 * 119.99797 * 19 17 15 22 22 H 1.48499 * 109.46892 * 239.99510 * 19 17 15 23 23 C 1.38598 * 119.96060 * 180.02562 * 10 9 5 24 24 F 1.35098 * 120.18882 * 0.02562 * 23 10 9 25 25 H 1.09000 * 109.47036 * 299.99445 * 1 2 3 26 26 H 1.08994 * 109.47588 * 60.00119 * 1 2 3 27 27 H 1.09007 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47299 * 240.00078 * 2 1 3 29 29 H 1.08997 * 109.47569 * 184.34134 * 3 2 1 30 30 H 1.09005 * 109.47106 * 304.34061 * 3 2 1 31 31 H 1.09008 * 109.46877 * 64.34057 * 3 2 1 32 32 H 1.09010 * 109.46478 * 306.53034 * 4 2 1 33 33 H 1.08997 * 109.47574 * 186.53030 * 4 2 1 34 34 H 1.08994 * 109.47549 * 65.00405 * 7 5 4 35 35 H 1.09000 * 109.46931 * 185.00760 * 7 5 4 36 36 H 0.96699 * 113.99736 * 180.02562 * 8 7 5 37 37 H 0.96999 * 120.00084 * 25.00086 * 9 5 4 38 38 H 1.08007 * 119.76314 * 359.97360 * 11 10 9 39 39 H 1.08005 * 119.80568 * 179.76273 * 12 11 10 40 40 H 1.08004 * 120.04597 * 180.23098 * 13 12 11 41 41 H 0.97001 * 119.99838 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6684 -2.2033 1.1700 6 1 0.5892 -2.3014 1.0523 7 6 2.1076 -2.9086 2.4546 8 8 3.5020 -2.6816 2.6698 9 7 2.3424 -2.8150 0.0220 10 6 1.8023 -3.9567 -0.5793 11 6 0.6222 -4.5071 -0.0903 12 6 0.0804 -5.6411 -0.6751 13 6 0.6979 -6.2305 -1.7539 14 6 1.8902 -5.6837 -2.2653 15 6 2.5301 -6.2833 -3.3736 16 1 3.1673 -5.6920 -4.0142 17 6 2.3378 -7.6434 -3.6408 18 7 1.8463 -8.4286 -2.7166 19 14 2.7830 -8.3379 -5.3167 20 1 3.3151 -7.2511 -6.1776 21 1 3.8150 -9.3936 -5.1569 22 1 1.5721 -8.9210 -5.9484 23 6 2.4409 -4.5350 -1.6650 24 9 3.5847 -3.9996 -2.1447 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1271 1.4436 -0.0778 30 1 1.6144 1.9783 -0.8486 31 1 1.7414 1.9334 0.9264 32 1 1.5844 -0.2793 2.1354 33 1 3.1238 -0.6212 1.3095 34 1 1.5408 -2.5140 3.2978 35 1 1.9238 -3.9791 2.3624 36 1 3.8501 -3.1010 3.4686 37 1 3.1631 -2.4283 -0.3211 38 1 0.1268 -4.0502 0.7537 39 1 -0.8344 -6.0618 -0.2843 40 1 0.2690 -7.1118 -2.2076 41 1 1.7134 -9.3714 -2.9018 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162368405.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:13 Heat of formation + Delta-G solvation = -115.674430 kcal Electronic energy + Delta-G solvation = -22529.204025 eV Core-core repulsion = 19128.486401 eV Total energy + Delta-G solvation = -3400.717623 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.03156 -40.05431 -38.58202 -36.95240 -36.10859 -34.64640 -31.55946 -31.40662 -28.36708 -27.99670 -27.38098 -26.80912 -23.30461 -22.50384 -21.70990 -20.60221 -19.36476 -18.36691 -17.85151 -17.55583 -16.90259 -16.45512 -16.04133 -15.88706 -15.63662 -15.55377 -14.99316 -14.88427 -14.48821 -14.44594 -13.70868 -13.56982 -13.43784 -13.22915 -13.02270 -12.99764 -12.91242 -12.69333 -12.49505 -12.37435 -12.11088 -11.74893 -11.54746 -11.54242 -11.45362 -11.27490 -11.12401 -10.81981 -10.47352 -9.28928 -8.68377 -7.93330 -6.40255 0.89567 1.18433 1.36642 1.50720 1.52660 2.20122 2.68501 2.71543 3.49172 3.65405 3.77569 4.00852 4.05922 4.12279 4.32879 4.43573 4.47741 4.57951 4.59715 4.78577 4.81332 4.84051 4.89866 4.90463 5.02251 5.05542 5.12792 5.14935 5.19557 5.29678 5.35728 5.47003 5.53605 5.55887 5.77876 5.94784 6.11912 6.22255 6.52234 6.75661 6.85146 6.89575 6.95605 7.11753 8.29449 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023032 B = 0.004493 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.393409 B = 6230.155292 C = 6498.339669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 C -0.141 4.141 4 C -0.103 4.103 5 C 0.154 3.846 6 H 0.094 0.906 7 C 0.060 3.940 8 O -0.583 6.583 9 N -0.735 5.735 10 C 0.219 3.781 11 C -0.283 4.283 12 C -0.071 4.071 13 C -0.213 4.213 14 C 0.090 3.910 15 C -0.496 4.496 16 H 0.064 0.936 17 C 0.040 3.960 18 N -0.815 5.815 19 Si 0.984 3.016 20 H -0.265 1.265 21 H -0.263 1.263 22 H -0.256 1.256 23 C -0.137 4.137 24 F -0.177 7.177 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.032 0.968 36 H 0.390 0.610 37 H 0.390 0.610 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.108 0.892 41 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.138 11.378 9.255 14.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.198 4.198 4 C -0.141 4.141 5 C 0.049 3.951 6 H 0.112 0.888 7 C -0.020 4.020 8 O -0.390 6.390 9 N -0.365 5.365 10 C 0.117 3.883 11 C -0.306 4.306 12 C -0.089 4.089 13 C -0.234 4.234 14 C 0.086 3.914 15 C -0.526 4.526 16 H 0.082 0.918 17 C -0.176 4.176 18 N -0.440 5.440 19 Si 0.804 3.196 20 H -0.189 1.189 21 H -0.187 1.187 22 H -0.180 1.180 23 C -0.161 4.161 24 F -0.157 7.157 25 H 0.090 0.910 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.238 0.762 37 H 0.223 0.777 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.125 0.875 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.354 11.552 8.911 14.970 hybrid contribution 0.995 -0.835 -0.572 1.419 sum -2.360 10.717 8.340 13.783 Atomic orbital electron populations 1.21845 0.94698 1.01431 1.02213 1.21096 0.96471 0.96526 0.97743 1.21792 1.00626 0.95087 1.02327 1.21715 1.01567 0.92178 0.98658 1.21185 0.97217 0.92935 0.83769 0.88827 1.22791 0.82520 0.98789 0.97865 1.86450 1.24447 1.78008 1.50101 1.44467 1.28822 1.28608 1.34639 1.17553 0.92827 0.87637 0.90320 1.20076 0.99443 1.02913 1.08140 1.20814 0.98572 0.94660 0.94901 1.20961 0.96970 1.03690 1.01770 1.17784 0.91844 0.89726 0.92027 1.19674 1.26870 0.95409 1.10599 0.91795 1.26706 0.92494 0.96517 1.01869 1.69879 1.33134 1.06670 1.34323 0.85144 0.79285 0.78355 0.76818 1.18892 1.18713 1.18001 1.17645 0.89773 1.04852 1.03839 1.91156 1.49484 1.86262 1.88762 0.90982 0.92999 0.93596 0.93647 0.93210 0.92617 0.91347 0.88826 0.91917 0.90470 0.94992 0.76166 0.77720 0.85354 0.85934 0.87451 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.98 71.98 0.65 -2.43 16 2 C -0.10 -2.32 2.86 -10.79 -0.03 -2.35 16 3 C -0.14 -2.69 9.19 71.98 0.66 -2.03 16 4 C -0.10 -2.34 3.97 30.59 0.12 -2.22 16 5 C 0.15 4.23 1.93 44.99 0.09 4.31 16 6 H 0.09 2.51 4.80 -2.39 -0.01 2.50 16 7 C 0.06 1.48 6.80 71.98 0.49 1.97 16 8 O -0.58 -14.90 12.79 -148.98 -1.91 -16.81 16 9 N -0.74 -27.12 4.48 -318.89 -1.43 -28.54 16 10 C 0.22 9.95 6.64 38.15 0.25 10.21 16 11 C -0.28 -11.86 8.88 22.57 0.20 -11.66 16 12 C -0.07 -3.18 10.01 22.20 0.22 -2.96 16 13 C -0.21 -11.34 8.68 22.74 0.20 -11.14 16 14 C 0.09 5.15 5.57 -21.27 -0.12 5.03 16 15 C -0.50 -28.76 8.78 23.44 0.21 -28.56 16 16 H 0.06 3.75 7.74 -2.91 -0.02 3.73 16 17 C 0.04 2.09 5.16 85.25 0.44 2.53 16 18 N -0.81 -43.18 10.93 21.83 0.24 -42.94 16 19 Si 0.98 39.69 29.59 68.60 2.03 41.72 16 20 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 22 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 23 C -0.14 -7.38 7.31 22.99 0.17 -7.22 16 24 F -0.18 -9.69 16.08 44.97 0.72 -8.96 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.04 1.10 6.55 -2.38 -0.02 1.09 16 28 H 0.04 1.34 7.49 -2.39 -0.02 1.32 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.06 1.58 7.67 -2.39 -0.02 1.56 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.03 0.93 7.82 -2.39 -0.02 0.91 16 36 H 0.39 6.54 9.12 -74.06 -0.68 5.87 16 37 H 0.39 15.05 8.04 -92.71 -0.75 14.31 16 38 H 0.13 4.44 6.18 -2.91 -0.02 4.42 16 39 H 0.12 4.67 8.06 -2.91 -0.02 4.64 16 40 H 0.11 5.91 6.16 -2.91 -0.02 5.89 16 41 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 Total: -1.00 -65.73 334.87 2.83 -62.89 By element: Atomic # 1 Polarization: 39.52 SS G_CDS: -0.37 Total: 39.15 kcal Atomic # 6 Polarization: -50.05 SS G_CDS: 3.54 Total: -46.51 kcal Atomic # 7 Polarization: -70.29 SS G_CDS: -1.19 Total: -71.48 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -1.91 Total: -16.81 kcal Atomic # 9 Polarization: -9.69 SS G_CDS: 0.72 Total: -8.96 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -65.73 2.83 -62.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162368405.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.780 kcal (2) G-P(sol) polarization free energy of solvation -65.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds