Wall clock time and date at job start Tue Mar 31 2020 05:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47246 * 2 1 4 4 C 1.53002 * 109.47105 * 119.99870 * 2 1 3 5 5 C 1.53007 * 109.47185 * 65.00149 * 4 2 1 6 6 H 1.09005 * 109.46629 * 305.00232 * 5 4 2 7 7 C 1.52997 * 109.47065 * 185.00318 * 5 4 2 8 8 O 1.42901 * 109.46800 * 304.99209 * 7 5 4 9 9 N 1.46497 * 109.46991 * 64.99757 * 5 4 2 10 10 C 1.39687 * 119.99601 * 205.00187 * 9 5 4 11 11 C 1.39286 * 119.94091 * 359.97438 * 10 9 5 12 12 C 1.38698 * 120.40323 * 179.97438 * 11 10 9 13 13 F 1.35100 * 119.86879 * 180.02562 * 12 11 10 14 14 C 1.37927 * 120.27165 * 0.02690 * 12 11 10 15 15 C 1.40708 * 119.86617 * 359.97438 * 14 12 11 16 16 C 1.41408 * 120.19154 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00139 * 24.35437 * 16 15 14 18 18 C 1.39931 * 119.99906 * 204.34475 * 16 15 14 19 19 N 1.30834 * 119.99774 * 17.75279 * 18 16 15 20 20 Si 1.86794 * 120.00014 * 197.75052 * 18 16 15 21 21 H 1.48497 * 109.47275 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47238 * 120.00237 * 20 18 16 23 23 H 1.48508 * 109.46774 * 240.00179 * 20 18 16 24 24 C 1.38290 * 119.93546 * 179.73016 * 10 9 5 25 25 H 1.09003 * 109.47223 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46864 * 300.00095 * 1 2 3 27 27 H 1.08994 * 109.47099 * 60.00010 * 1 2 3 28 28 H 1.09000 * 109.47188 * 239.99514 * 2 1 3 29 29 H 1.09001 * 109.47133 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46972 * 300.00048 * 3 2 1 31 31 H 1.09004 * 109.47266 * 60.00152 * 3 2 1 32 32 H 1.08995 * 109.47150 * 304.99788 * 4 2 1 33 33 H 1.08997 * 109.46991 * 184.99995 * 4 2 1 34 34 H 1.08998 * 109.47594 * 64.99929 * 7 5 4 35 35 H 1.08999 * 109.46966 * 185.00109 * 7 5 4 36 36 H 0.96701 * 113.99695 * 179.97438 * 8 7 5 37 37 H 0.96992 * 120.00144 * 25.00289 * 9 5 4 38 38 H 1.08011 * 119.79943 * 0.02655 * 11 10 9 39 39 H 1.07999 * 120.06517 * 179.97438 * 14 12 11 40 40 H 0.97002 * 119.99825 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.14087 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1955 1.1880 6 1 0.5563 -2.2707 1.0527 7 6 2.0353 -2.8888 2.4919 8 8 3.4306 -2.6904 2.7281 9 7 2.3147 -2.8421 0.0627 10 6 1.7594 -3.9795 -0.5283 11 6 0.5600 -4.4981 -0.0462 12 6 -0.0003 -5.6266 -0.6261 13 9 -1.1644 -6.1202 -0.1502 14 6 0.6262 -6.2472 -1.6866 15 6 1.8384 -5.7329 -2.1827 16 6 2.4868 -6.3640 -3.2694 17 1 1.9171 -6.9632 -3.9642 18 6 3.8668 -6.2119 -3.4447 19 7 4.6104 -5.7964 -2.4517 20 14 4.6470 -6.6021 -5.0964 21 1 3.5973 -7.0507 -6.0462 22 1 5.3110 -5.3857 -5.6300 23 1 5.6533 -7.6809 -4.9259 24 6 2.3990 -4.5855 -1.5941 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6055 -0.2617 2.1369 33 1 3.1263 -0.6443 1.2952 34 1 1.4633 -2.4668 3.3182 35 1 1.8282 -3.9561 2.4143 36 1 3.7546 -3.1034 3.5403 37 1 3.1501 -2.4804 -0.2721 38 1 0.0626 -4.0180 0.7837 39 1 0.1873 -7.1260 -2.1354 40 1 5.5671 -5.6913 -2.5731 41 1 3.3272 -4.1815 -1.9704 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162372335.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:16 Heat of formation + Delta-G solvation = -99.637668 kcal Electronic energy + Delta-G solvation = -22438.010159 eV Core-core repulsion = 19037.987942 eV Total energy + Delta-G solvation = -3400.022217 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -47.68267 -38.70738 -37.01322 -35.88482 -34.30961 -33.01622 -30.25000 -29.25685 -27.10559 -26.76440 -26.03698 -25.29190 -21.61500 -20.92427 -20.30162 -19.43110 -17.75986 -17.08768 -16.12947 -15.36549 -15.10527 -14.85998 -14.72564 -14.59171 -14.32176 -14.21810 -13.86354 -13.62191 -13.40973 -12.89694 -12.46121 -12.16817 -12.00480 -11.89281 -11.77125 -11.65718 -11.35712 -11.12123 -11.03530 -10.61413 -10.58189 -10.48341 -10.32431 -10.29532 -10.03146 -9.78414 -9.54977 -9.31172 -8.65652 -7.33589 -6.82082 -6.23834 -4.43712 2.75345 2.99799 3.07378 3.12975 3.22857 3.92040 4.21433 4.53215 4.62657 4.82973 5.02633 5.04497 5.42372 5.49275 5.57623 5.60449 5.66235 5.69015 5.77975 5.83797 5.89247 5.96595 6.00837 6.06646 6.21967 6.32016 6.37733 6.51218 6.53688 6.68402 6.84366 7.03304 7.21202 7.34271 7.58949 7.74033 7.82430 8.00586 8.06903 8.36892 8.66510 8.73864 8.89459 8.98545 10.15764 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013966 B = 0.005378 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.320752 B = 5204.677953 C = 5941.960529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.145 4.145 4 C -0.113 4.113 5 C 0.159 3.841 6 H 0.088 0.912 7 C 0.057 3.943 8 O -0.564 6.564 9 N -0.739 5.739 10 C 0.244 3.756 11 C -0.338 4.338 12 C 0.142 3.858 13 F -0.170 7.170 14 C -0.292 4.292 15 C 0.158 3.842 16 C -0.457 4.457 17 H 0.080 0.920 18 C 0.078 3.922 19 N -0.783 5.783 20 Si 0.907 3.093 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.275 1.275 24 C -0.240 4.240 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.039 0.961 35 H 0.052 0.948 36 H 0.371 0.629 37 H 0.394 0.606 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.280 0.720 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.644 9.788 6.442 11.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.202 4.202 4 C -0.151 4.151 5 C 0.053 3.947 6 H 0.106 0.894 7 C -0.022 4.022 8 O -0.368 6.368 9 N -0.371 5.371 10 C 0.144 3.856 11 C -0.361 4.361 12 C 0.122 3.878 13 F -0.149 7.149 14 C -0.313 4.313 15 C 0.155 3.845 16 C -0.486 4.486 17 H 0.098 0.902 18 C -0.141 4.141 19 N -0.407 5.407 20 Si 0.731 3.269 21 H -0.183 1.183 22 H -0.197 1.197 23 H -0.200 1.200 24 C -0.265 4.265 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.216 0.784 37 H 0.228 0.772 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.091 0.909 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.632 10.190 6.096 11.986 hybrid contribution 0.557 -0.568 -0.035 0.797 sum -1.075 9.622 6.061 11.422 Atomic orbital electron populations 1.21876 0.95497 1.02096 1.01043 1.21122 0.95821 0.95623 0.99146 1.21831 1.00825 0.96344 1.01224 1.21768 1.01921 0.93869 0.97537 1.20863 0.97368 0.91270 0.85244 0.89413 1.22863 0.81925 1.00172 0.97289 1.86493 1.24419 1.78979 1.46955 1.44360 1.26887 1.30138 1.35686 1.17291 0.90879 0.85816 0.91597 1.19690 1.01894 1.04311 1.10242 1.17241 0.81452 0.94033 0.95037 1.91319 1.47598 1.87712 1.88263 1.20819 1.02620 1.04913 1.02929 1.17068 0.88777 0.88820 0.89860 1.19594 0.92445 1.27210 1.09395 0.90202 1.25917 0.97623 0.92881 0.97660 1.69873 1.06844 1.33334 1.30692 0.86284 0.79409 0.78826 0.82360 1.18329 1.19695 1.19996 1.20745 1.04215 0.99943 1.01552 0.92105 0.93225 0.93029 0.90444 0.92875 0.92989 0.93114 0.91646 0.90918 0.94315 0.92955 0.78393 0.77169 0.88530 0.88212 0.90944 0.86068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.96 37.16 0.33 -1.45 16 2 C -0.10 -1.23 2.86 -90.62 -0.26 -1.49 16 3 C -0.14 -1.54 9.19 37.16 0.34 -1.20 16 4 C -0.11 -1.44 3.94 -26.73 -0.11 -1.55 16 5 C 0.16 2.42 1.92 -67.93 -0.13 2.29 16 6 H 0.09 1.37 4.67 -51.93 -0.24 1.12 16 7 C 0.06 0.82 6.78 37.16 0.25 1.07 16 8 O -0.56 -8.06 12.83 -35.23 -0.45 -8.51 16 9 N -0.74 -13.64 4.56 -52.23 -0.24 -13.88 16 10 C 0.24 5.50 6.62 -83.87 -0.56 4.95 16 11 C -0.34 -7.63 8.83 -39.02 -0.34 -7.98 16 12 C 0.14 3.43 7.28 -39.53 -0.29 3.14 16 13 F -0.17 -3.89 17.26 2.25 0.04 -3.85 16 14 C -0.29 -7.45 9.76 -38.76 -0.38 -7.83 16 15 C 0.16 4.22 5.57 -106.86 -0.60 3.62 16 16 C -0.46 -12.03 9.05 -37.74 -0.34 -12.38 16 17 H 0.08 2.03 7.91 -52.49 -0.41 1.62 16 18 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 19 N -0.78 -19.86 10.95 55.55 0.61 -19.26 16 20 Si 0.91 18.41 29.59 -169.99 -5.03 13.38 16 21 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 C -0.24 -6.09 8.53 -38.67 -0.33 -6.42 16 25 H 0.06 0.82 6.46 -51.93 -0.34 0.49 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 1.12 7.62 -51.93 -0.40 0.72 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.99 7.73 -51.93 -0.40 0.59 16 34 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.86 7.80 -51.93 -0.41 0.46 16 36 H 0.37 3.72 9.12 45.56 0.42 4.13 16 37 H 0.39 7.26 8.61 -40.82 -0.35 6.91 16 38 H 0.10 1.98 6.18 -52.48 -0.32 1.65 16 39 H 0.10 2.45 8.06 -52.49 -0.42 2.03 16 40 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 41 H 0.12 3.17 6.16 -52.49 -0.32 2.84 16 LS Contribution 336.57 15.07 5.07 5.07 Total: -1.00 -27.95 336.57 -7.79 -35.74 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -5.29 Total: 14.67 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -2.49 Total: -23.37 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.37 Total: -33.14 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.45 Total: -8.51 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.04 Total: -3.85 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.95 -7.79 -35.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162372335.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.897 kcal (2) G-P(sol) polarization free energy of solvation -27.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds