Wall clock time and date at job start Tue Mar 31 2020 05:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47246 * 2 1 4 4 C 1.53002 * 109.47105 * 119.99870 * 2 1 3 5 5 C 1.53007 * 109.47185 * 65.00149 * 4 2 1 6 6 H 1.09005 * 109.46629 * 305.00232 * 5 4 2 7 7 C 1.52997 * 109.47065 * 185.00318 * 5 4 2 8 8 O 1.42901 * 109.46800 * 304.99209 * 7 5 4 9 9 N 1.46497 * 109.46991 * 64.99757 * 5 4 2 10 10 C 1.39687 * 119.99601 * 205.00187 * 9 5 4 11 11 C 1.39286 * 119.94091 * 359.97438 * 10 9 5 12 12 C 1.38698 * 120.40323 * 179.97438 * 11 10 9 13 13 F 1.35100 * 119.86879 * 180.02562 * 12 11 10 14 14 C 1.37927 * 120.27165 * 0.02690 * 12 11 10 15 15 C 1.40708 * 119.86617 * 359.97438 * 14 12 11 16 16 C 1.41408 * 120.19154 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00139 * 24.35437 * 16 15 14 18 18 C 1.39931 * 119.99906 * 204.34475 * 16 15 14 19 19 N 1.30834 * 119.99774 * 17.75279 * 18 16 15 20 20 Si 1.86794 * 120.00014 * 197.75052 * 18 16 15 21 21 H 1.48497 * 109.47275 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47238 * 120.00237 * 20 18 16 23 23 H 1.48508 * 109.46774 * 240.00179 * 20 18 16 24 24 C 1.38290 * 119.93546 * 179.73016 * 10 9 5 25 25 H 1.09003 * 109.47223 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46864 * 300.00095 * 1 2 3 27 27 H 1.08994 * 109.47099 * 60.00010 * 1 2 3 28 28 H 1.09000 * 109.47188 * 239.99514 * 2 1 3 29 29 H 1.09001 * 109.47133 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46972 * 300.00048 * 3 2 1 31 31 H 1.09004 * 109.47266 * 60.00152 * 3 2 1 32 32 H 1.08995 * 109.47150 * 304.99788 * 4 2 1 33 33 H 1.08997 * 109.46991 * 184.99995 * 4 2 1 34 34 H 1.08998 * 109.47594 * 64.99929 * 7 5 4 35 35 H 1.08999 * 109.46966 * 185.00109 * 7 5 4 36 36 H 0.96701 * 113.99695 * 179.97438 * 8 7 5 37 37 H 0.96992 * 120.00144 * 25.00289 * 9 5 4 38 38 H 1.08011 * 119.79943 * 0.02655 * 11 10 9 39 39 H 1.07999 * 120.06517 * 179.97438 * 14 12 11 40 40 H 0.97002 * 119.99825 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.14087 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1955 1.1880 6 1 0.5563 -2.2707 1.0527 7 6 2.0353 -2.8888 2.4919 8 8 3.4306 -2.6904 2.7281 9 7 2.3147 -2.8421 0.0627 10 6 1.7594 -3.9795 -0.5283 11 6 0.5600 -4.4981 -0.0462 12 6 -0.0003 -5.6266 -0.6261 13 9 -1.1644 -6.1202 -0.1502 14 6 0.6262 -6.2472 -1.6866 15 6 1.8384 -5.7329 -2.1827 16 6 2.4868 -6.3640 -3.2694 17 1 1.9171 -6.9632 -3.9642 18 6 3.8668 -6.2119 -3.4447 19 7 4.6104 -5.7964 -2.4517 20 14 4.6470 -6.6021 -5.0964 21 1 3.5973 -7.0507 -6.0462 22 1 5.3110 -5.3857 -5.6300 23 1 5.6533 -7.6809 -4.9259 24 6 2.3990 -4.5855 -1.5941 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6055 -0.2617 2.1369 33 1 3.1263 -0.6443 1.2952 34 1 1.4633 -2.4668 3.3182 35 1 1.8282 -3.9561 2.4143 36 1 3.7546 -3.1034 3.5403 37 1 3.1501 -2.4804 -0.2721 38 1 0.0626 -4.0180 0.7837 39 1 0.1873 -7.1260 -2.1354 40 1 5.5671 -5.6913 -2.5731 41 1 3.3272 -4.1815 -1.9704 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162372335.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:15 Heat of formation + Delta-G solvation = -116.320779 kcal Electronic energy + Delta-G solvation = -22438.733593 eV Core-core repulsion = 19037.987942 eV Total energy + Delta-G solvation = -3400.745651 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.57268 -40.15866 -38.59755 -36.94104 -35.94125 -34.69836 -31.69752 -31.13071 -28.45094 -28.00117 -27.45770 -26.84822 -23.25688 -22.65425 -21.71010 -20.64135 -19.47953 -18.38886 -17.83341 -16.98956 -16.82966 -16.46468 -16.25866 -16.11447 -15.85008 -15.62832 -15.38641 -14.94082 -14.65471 -14.40764 -13.84683 -13.50081 -13.44272 -13.24791 -12.99612 -12.93724 -12.79782 -12.60895 -12.46270 -12.37248 -12.10315 -11.97210 -11.58808 -11.51839 -11.44013 -11.32912 -11.08448 -10.82695 -10.40406 -9.26852 -8.68266 -7.98226 -6.42358 0.91746 1.10453 1.40350 1.52881 1.55722 2.21861 2.68950 2.75093 3.48606 3.68332 3.78305 3.85343 4.01937 4.07932 4.32430 4.42935 4.48549 4.54644 4.65106 4.73673 4.79144 4.83193 4.86842 4.91279 5.00112 5.03758 5.13820 5.13998 5.19170 5.28164 5.36714 5.47658 5.54558 5.55206 5.71992 5.85167 6.10302 6.16080 6.47729 6.84640 6.90641 6.95220 6.99183 7.16500 8.31702 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013966 B = 0.005378 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.320752 B = 5204.677953 C = 5941.960529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 C -0.140 4.140 4 C -0.101 4.101 5 C 0.152 3.848 6 H 0.088 0.912 7 C 0.061 3.939 8 O -0.579 6.579 9 N -0.730 5.730 10 C 0.257 3.743 11 C -0.334 4.334 12 C 0.139 3.861 13 F -0.162 7.162 14 C -0.319 4.319 15 C 0.134 3.866 16 C -0.493 4.493 17 H 0.076 0.924 18 C 0.040 3.960 19 N -0.811 5.811 20 Si 0.982 3.018 21 H -0.259 1.259 22 H -0.263 1.263 23 H -0.265 1.265 24 C -0.264 4.264 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.027 0.973 36 H 0.389 0.611 37 H 0.394 0.606 38 H 0.122 0.878 39 H 0.097 0.903 40 H 0.289 0.711 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.412 11.397 7.388 13.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.198 4.198 4 C -0.139 4.139 5 C 0.046 3.954 6 H 0.105 0.895 7 C -0.019 4.019 8 O -0.386 6.386 9 N -0.359 5.359 10 C 0.154 3.846 11 C -0.358 4.358 12 C 0.120 3.880 13 F -0.141 7.141 14 C -0.341 4.341 15 C 0.131 3.869 16 C -0.522 4.522 17 H 0.094 0.906 18 C -0.176 4.176 19 N -0.436 5.436 20 Si 0.803 3.197 21 H -0.183 1.183 22 H -0.187 1.187 23 H -0.190 1.190 24 C -0.289 4.289 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.046 0.954 36 H 0.238 0.762 37 H 0.228 0.772 38 H 0.140 0.860 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.402 11.824 7.094 13.859 hybrid contribution 0.460 -1.004 -0.198 1.121 sum -0.942 10.820 6.896 12.865 Atomic orbital electron populations 1.21855 0.95032 1.01219 1.02185 1.21095 0.96184 0.96606 0.97846 1.21784 1.00793 0.95007 1.02192 1.21688 1.01537 0.92043 0.98635 1.21160 0.97073 0.92765 0.84392 0.89462 1.22764 0.82619 0.98683 0.97798 1.86445 1.24361 1.79291 1.48548 1.44470 1.26681 1.28710 1.36071 1.17305 0.90450 0.86359 0.90522 1.19900 1.01711 1.03670 1.10475 1.17355 0.81616 0.94345 0.94711 1.91327 1.47082 1.87682 1.88047 1.20891 1.03207 1.05702 1.04275 1.17393 0.89446 0.89561 0.90535 1.19836 0.93722 1.28578 1.10062 0.90598 1.26737 0.97408 0.92234 1.01236 1.69913 1.07546 1.33540 1.32551 0.85163 0.78321 0.78983 0.77274 1.18278 1.18715 1.19005 1.20677 1.04406 1.00557 1.03255 0.93916 0.91208 0.92835 0.93142 0.92929 0.92638 0.91551 0.89228 0.91644 0.90850 0.95444 0.76222 0.77223 0.86050 0.88467 0.90058 0.87437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.96 71.98 0.64 -2.56 16 2 C -0.10 -2.28 2.86 -10.79 -0.03 -2.31 16 3 C -0.14 -2.65 9.19 71.98 0.66 -1.98 16 4 C -0.10 -2.33 3.94 30.60 0.12 -2.21 16 5 C 0.15 4.32 1.92 44.99 0.09 4.40 16 6 H 0.09 2.53 4.67 -2.38 -0.01 2.52 16 7 C 0.06 1.60 6.78 71.98 0.49 2.09 16 8 O -0.58 -15.28 12.83 -148.98 -1.91 -17.19 16 9 N -0.73 -26.67 4.56 -319.14 -1.46 -28.13 16 10 C 0.26 11.66 6.62 38.15 0.25 11.92 16 11 C -0.33 -14.99 8.83 22.63 0.20 -14.79 16 12 C 0.14 6.79 7.28 22.31 0.16 6.95 16 13 F -0.16 -7.37 17.26 44.97 0.78 -6.60 16 14 C -0.32 -16.90 9.76 22.80 0.22 -16.68 16 15 C 0.13 7.44 5.57 -21.31 -0.12 7.32 16 16 C -0.49 -26.93 9.05 23.46 0.21 -26.72 16 17 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 18 C 0.04 2.03 5.14 85.25 0.44 2.47 16 19 N -0.81 -41.93 10.95 21.82 0.24 -41.69 16 20 Si 0.98 38.00 29.59 68.60 2.03 40.03 16 21 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 22 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 23 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 24 C -0.26 -13.84 8.53 22.86 0.20 -13.64 16 25 H 0.04 1.09 6.46 -2.39 -0.02 1.07 16 26 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.05 1.44 7.62 -2.39 -0.02 1.42 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 1.64 7.73 -2.39 -0.02 1.62 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.03 0.86 7.80 -2.39 -0.02 0.84 16 36 H 0.39 6.91 9.12 -74.06 -0.68 6.24 16 37 H 0.39 14.55 8.61 -92.71 -0.80 13.75 16 38 H 0.12 4.78 6.18 -2.90 -0.02 4.76 16 39 H 0.10 5.01 8.06 -2.91 -0.02 4.98 16 40 H 0.29 13.42 8.30 -92.71 -0.77 12.65 16 41 H 0.11 5.84 6.16 -2.91 -0.02 5.83 16 Total: -1.00 -61.27 336.57 2.79 -58.48 By element: Atomic # 1 Polarization: 41.26 SS G_CDS: -0.42 Total: 40.84 kcal Atomic # 6 Polarization: -49.28 SS G_CDS: 3.54 Total: -45.75 kcal Atomic # 7 Polarization: -68.60 SS G_CDS: -1.22 Total: -69.82 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -1.91 Total: -17.19 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 0.78 Total: -6.60 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Total: -61.27 2.79 -58.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162372335.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.843 kcal (2) G-P(sol) polarization free energy of solvation -61.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds