Wall clock time and date at job start Tue Mar 31 2020 05:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47216 * 2 1 4 4 O 1.42901 * 109.46978 * 179.97438 * 3 2 1 5 5 C 1.36002 * 116.99887 * 180.02562 * 4 3 2 6 6 C 1.38703 * 119.97533 * 0.02562 * 5 4 3 7 7 C 1.38155 * 120.05534 * 179.74915 * 6 5 4 8 8 C 1.38787 * 120.00443 * 0.50011 * 7 6 5 9 9 N 1.40107 * 120.02731 * 179.74364 * 8 7 6 10 10 C 1.46504 * 119.99638 * 359.73192 * 9 8 7 11 11 C 1.53006 * 109.46883 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47242 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99967 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00542 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99408 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47155 * 60.00002 * 17 15 13 19 19 H 1.48503 * 109.47086 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46879 * 300.00005 * 17 15 13 21 21 C 1.39035 * 119.94595 * 359.47952 * 8 7 6 22 22 F 1.35097 * 120.02744 * 180.28933 * 21 8 7 23 23 C 1.38285 * 119.94654 * 0.26982 * 21 8 7 24 24 H 1.09000 * 109.47364 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47617 * 300.00193 * 1 2 3 26 26 H 1.09006 * 109.47125 * 60.00030 * 1 2 3 27 27 H 1.09001 * 109.46875 * 239.99820 * 2 1 3 28 28 H 1.08997 * 109.46905 * 119.99849 * 2 1 3 29 29 H 1.09001 * 109.47346 * 60.00108 * 3 2 1 30 30 H 1.08997 * 109.47060 * 299.99754 * 3 2 1 31 31 H 1.08002 * 119.96989 * 0.02562 * 6 5 4 32 32 H 1.07997 * 120.00228 * 180.25616 * 7 6 5 33 33 H 0.96992 * 120.00395 * 179.73210 * 9 8 7 34 34 H 1.09001 * 109.46891 * 60.00033 * 10 9 8 35 35 H 1.08993 * 109.47378 * 299.99405 * 10 9 8 36 36 H 1.09001 * 109.46801 * 300.00349 * 11 10 9 37 37 H 1.09001 * 109.46998 * 59.99945 * 11 10 9 38 38 H 1.08996 * 109.46952 * 300.00302 * 12 11 10 39 39 H 1.09001 * 109.46832 * 60.00321 * 12 11 10 40 40 H 0.96999 * 119.99910 * 180.02562 * 16 15 13 41 41 H 1.07995 * 119.99944 * 179.97438 * 23 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0865 2.6541 0.0012 6 6 3.3306 3.8171 0.0018 7 6 3.9561 5.0489 0.0077 8 6 5.3419 5.1236 0.0025 9 7 5.9768 6.3726 0.0030 10 6 5.1775 7.6004 0.0031 11 6 6.1083 8.8148 0.0043 12 6 5.2737 10.0971 0.0050 13 6 6.1905 11.2931 0.0056 14 1 7.2614 11.1527 0.0051 15 6 5.6623 12.5667 0.0068 16 7 4.3583 12.7377 0.0070 17 14 6.7987 14.0493 0.0069 18 1 7.6545 14.0170 -1.2064 19 1 5.9886 15.2939 0.0076 20 1 7.6564 14.0155 1.2187 21 6 6.0998 3.9580 0.0024 22 9 7.4489 4.0288 0.0033 23 6 5.4715 2.7261 0.0017 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9562 -0.8900 31 1 2.2521 3.7596 0.0022 32 1 3.3667 5.9539 0.0123 33 1 6.9453 6.4244 0.0033 34 1 4.5484 7.6244 0.8929 35 1 4.5491 7.6250 -0.8871 36 1 6.7366 8.7901 0.8947 37 1 6.7378 8.7910 -0.8852 38 1 4.6452 10.1219 -0.8851 39 1 4.6447 10.1206 0.8949 40 1 3.9866 13.6336 0.0074 41 1 6.0594 1.8202 0.0012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168436186.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:07 Heat of formation + Delta-G solvation = -83.886771 kcal Electronic energy + Delta-G solvation = -20740.571261 eV Core-core repulsion = 17341.232054 eV Total energy + Delta-G solvation = -3399.339207 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.76932 -40.14045 -38.12398 -35.78072 -34.19421 -33.36211 -31.43631 -30.71935 -28.53680 -26.83403 -25.93953 -23.79043 -22.72299 -21.57085 -21.42559 -20.32776 -18.52188 -17.26559 -16.64209 -16.51749 -16.19794 -15.91548 -15.60362 -15.09253 -14.71856 -14.55809 -14.31776 -14.20536 -13.89552 -13.40950 -12.72892 -12.71653 -12.62059 -12.32653 -12.17990 -12.15433 -11.74044 -11.62012 -11.44810 -10.99669 -10.98924 -10.82008 -10.68040 -10.61488 -9.92479 -9.50302 -9.43100 -9.17509 -8.91241 -8.39961 -7.06121 -6.05176 -4.07929 1.11691 1.49513 2.97291 3.30730 3.35143 3.37480 3.59579 3.64753 4.33650 4.42362 4.52968 4.53003 4.78046 4.83603 4.89546 5.04259 5.07091 5.24912 5.30831 5.33903 5.36008 5.56914 5.60085 5.68830 5.68888 5.69707 5.82126 5.97737 6.06325 6.13129 6.29692 6.48783 6.55266 6.67873 6.94475 7.26251 7.44200 7.58575 7.71217 7.86857 7.93386 8.35358 8.98248 9.56427 11.06128 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027315 B = 0.002558 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.820309 B =10944.907952 C =11928.071680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.059 3.941 4 O -0.319 6.319 5 C 0.087 3.913 6 C -0.162 4.162 7 C -0.138 4.138 8 C 0.168 3.832 9 N -0.741 5.741 10 C 0.122 3.878 11 C -0.121 4.121 12 C 0.025 3.975 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.049 3.951 22 F -0.139 7.139 23 C -0.138 4.138 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.131 0.869 32 H 0.137 0.863 33 H 0.401 0.599 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.262 0.738 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.536 -24.143 -0.009 24.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.016 4.016 4 O -0.233 6.233 5 C 0.041 3.959 6 C -0.182 4.182 7 C -0.161 4.161 8 C 0.062 3.938 9 N -0.371 5.371 10 C -0.001 4.001 11 C -0.159 4.159 12 C -0.012 4.012 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C 0.025 3.975 22 F -0.118 7.118 23 C -0.158 4.158 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.148 0.852 32 H 0.155 0.845 33 H 0.236 0.764 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.684 -24.003 -0.009 24.667 hybrid contribution 0.976 1.135 0.000 1.497 sum -4.708 -22.867 -0.010 23.347 Atomic orbital electron populations 1.21697 0.94309 1.02454 1.02317 1.21475 0.95976 0.95020 1.03616 1.22828 0.78754 0.98572 1.01441 1.86006 1.20896 1.26704 1.89697 1.18237 0.91109 0.84189 1.02368 1.21051 0.99957 0.91536 1.05636 1.20417 0.91649 0.98233 1.05775 1.17860 0.92218 0.85324 0.98354 1.44957 1.08779 1.02076 1.81248 1.21632 0.94815 0.82988 1.00646 1.21858 0.98487 0.94495 1.01053 1.19019 0.95010 0.89712 0.97489 1.21172 0.93033 0.90935 1.50976 0.92693 1.25025 0.95062 0.99144 0.95224 1.69947 1.10556 1.22322 1.50578 0.86630 0.80653 0.81907 0.78651 1.20221 1.21249 1.20215 1.16704 0.76707 0.92401 1.11723 1.91447 1.28702 1.97001 1.94672 1.19934 0.92371 0.96701 1.06822 0.91817 0.92308 0.92315 0.90902 0.90902 0.92097 0.92090 0.85162 0.84494 0.76382 0.92455 0.92447 0.92698 0.92695 0.96342 0.96337 0.92869 0.84370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.12 -0.79 6.30 -26.73 -0.17 -0.96 16 3 C 0.06 0.48 4.74 37.15 0.18 0.65 16 4 O -0.32 -3.57 10.14 -19.75 -0.20 -3.77 16 5 C 0.09 1.07 6.69 -39.24 -0.26 0.80 16 6 C -0.16 -1.88 9.03 -39.44 -0.36 -2.23 16 7 C -0.14 -1.80 9.31 -39.41 -0.37 -2.16 16 8 C 0.17 2.42 6.66 -83.58 -0.56 1.86 16 9 N -0.74 -11.19 5.75 -58.51 -0.34 -11.53 16 10 C 0.12 2.01 4.92 -4.04 -0.02 2.00 16 11 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 12 C 0.03 0.63 4.97 -27.89 -0.14 0.49 16 13 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 14 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 17 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C 0.05 0.68 7.31 -39.27 -0.29 0.40 16 22 F -0.14 -2.01 16.64 2.25 0.04 -1.97 16 23 C -0.14 -1.76 9.96 -39.40 -0.39 -2.15 16 24 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 30 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 31 H 0.13 1.19 6.29 -52.49 -0.33 0.86 16 32 H 0.14 1.70 6.73 -52.49 -0.35 1.35 16 33 H 0.40 5.87 7.96 -40.82 -0.32 5.54 16 34 H 0.06 0.94 7.94 -51.93 -0.41 0.52 16 35 H 0.06 0.94 7.96 -51.93 -0.41 0.52 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 345.89 15.07 5.21 5.21 Total: -1.00 -29.97 345.89 -8.53 -38.49 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.40 Total: 0.47 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -2.56 Total: -17.57 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.40 Total: -37.33 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: -0.20 Total: -3.77 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.97 -8.53 -38.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168436186.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.392 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds