Wall clock time and date at job start Tue Mar 31 2020 05:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47216 * 2 1 4 4 O 1.42901 * 109.46978 * 179.97438 * 3 2 1 5 5 C 1.36002 * 116.99887 * 180.02562 * 4 3 2 6 6 C 1.38703 * 119.97533 * 0.02562 * 5 4 3 7 7 C 1.38155 * 120.05534 * 179.74915 * 6 5 4 8 8 C 1.38787 * 120.00443 * 0.50011 * 7 6 5 9 9 N 1.40107 * 120.02731 * 179.74364 * 8 7 6 10 10 C 1.46504 * 119.99638 * 359.73192 * 9 8 7 11 11 C 1.53006 * 109.46883 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47242 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99967 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00542 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99408 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47155 * 60.00002 * 17 15 13 19 19 H 1.48503 * 109.47086 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46879 * 300.00005 * 17 15 13 21 21 C 1.39035 * 119.94595 * 359.47952 * 8 7 6 22 22 F 1.35097 * 120.02744 * 180.28933 * 21 8 7 23 23 C 1.38285 * 119.94654 * 0.26982 * 21 8 7 24 24 H 1.09000 * 109.47364 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47617 * 300.00193 * 1 2 3 26 26 H 1.09006 * 109.47125 * 60.00030 * 1 2 3 27 27 H 1.09001 * 109.46875 * 239.99820 * 2 1 3 28 28 H 1.08997 * 109.46905 * 119.99849 * 2 1 3 29 29 H 1.09001 * 109.47346 * 60.00108 * 3 2 1 30 30 H 1.08997 * 109.47060 * 299.99754 * 3 2 1 31 31 H 1.08002 * 119.96989 * 0.02562 * 6 5 4 32 32 H 1.07997 * 120.00228 * 180.25616 * 7 6 5 33 33 H 0.96992 * 120.00395 * 179.73210 * 9 8 7 34 34 H 1.09001 * 109.46891 * 60.00033 * 10 9 8 35 35 H 1.08993 * 109.47378 * 299.99405 * 10 9 8 36 36 H 1.09001 * 109.46801 * 300.00349 * 11 10 9 37 37 H 1.09001 * 109.46998 * 59.99945 * 11 10 9 38 38 H 1.08996 * 109.46952 * 300.00302 * 12 11 10 39 39 H 1.09001 * 109.46832 * 60.00321 * 12 11 10 40 40 H 0.96999 * 119.99910 * 180.02562 * 16 15 13 41 41 H 1.07995 * 119.99944 * 179.97438 * 23 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0865 2.6541 0.0012 6 6 3.3306 3.8171 0.0018 7 6 3.9561 5.0489 0.0077 8 6 5.3419 5.1236 0.0025 9 7 5.9768 6.3726 0.0030 10 6 5.1775 7.6004 0.0031 11 6 6.1083 8.8148 0.0043 12 6 5.2737 10.0971 0.0050 13 6 6.1905 11.2931 0.0056 14 1 7.2614 11.1527 0.0051 15 6 5.6623 12.5667 0.0068 16 7 4.3583 12.7377 0.0070 17 14 6.7987 14.0493 0.0069 18 1 7.6545 14.0170 -1.2064 19 1 5.9886 15.2939 0.0076 20 1 7.6564 14.0155 1.2187 21 6 6.0998 3.9580 0.0024 22 9 7.4489 4.0288 0.0033 23 6 5.4715 2.7261 0.0017 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9562 -0.8900 31 1 2.2521 3.7596 0.0022 32 1 3.3667 5.9539 0.0123 33 1 6.9453 6.4244 0.0033 34 1 4.5484 7.6244 0.8929 35 1 4.5491 7.6250 -0.8871 36 1 6.7366 8.7901 0.8947 37 1 6.7378 8.7910 -0.8852 38 1 4.6452 10.1219 -0.8851 39 1 4.6447 10.1206 0.8949 40 1 3.9866 13.6336 0.0074 41 1 6.0594 1.8202 0.0012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168436186.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:06 Heat of formation + Delta-G solvation = -99.864210 kcal Electronic energy + Delta-G solvation = -20741.264095 eV Core-core repulsion = 17341.232054 eV Total energy + Delta-G solvation = -3400.032041 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.85279 -41.05767 -39.12645 -37.05022 -35.41173 -34.59600 -33.13106 -31.69612 -29.84918 -27.91584 -27.08870 -25.23785 -23.83700 -22.66020 -22.32570 -21.79022 -19.46347 -18.57470 -18.25861 -17.52578 -17.22592 -16.89511 -16.66965 -16.51189 -16.17587 -15.94672 -15.45108 -14.96773 -14.94135 -14.27482 -14.11301 -14.09964 -13.81031 -13.50423 -13.30816 -13.17778 -12.82007 -12.78221 -12.58913 -12.38716 -12.31532 -12.24048 -11.72144 -11.70150 -11.48774 -11.46266 -11.20877 -10.55665 -10.50479 -9.90850 -8.21102 -8.14281 -6.31674 0.12081 0.48045 1.40320 1.42693 1.50639 2.16855 2.36748 2.46008 2.64560 3.12468 3.33887 3.74455 3.97000 4.01244 4.05102 4.14093 4.22540 4.22883 4.35612 4.39470 4.54101 4.60646 4.62016 4.68934 4.85258 4.96091 4.99682 5.04032 5.11005 5.15393 5.16743 5.22878 5.32041 5.38850 5.48765 5.59011 5.71102 5.83129 6.15739 6.26634 6.47985 6.71737 6.84666 7.37357 8.90401 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027315 B = 0.002558 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.820309 B =10944.907952 C =11928.071680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.050 3.950 4 O -0.328 6.328 5 C 0.090 3.910 6 C -0.156 4.156 7 C -0.142 4.142 8 C 0.149 3.851 9 N -0.745 5.745 10 C 0.138 3.862 11 C -0.106 4.106 12 C 0.028 3.972 13 C -0.545 4.545 14 H 0.059 0.941 15 C 0.000 4.000 16 N -0.931 5.931 17 Si 0.963 3.037 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.268 1.268 21 C 0.038 3.962 22 F -0.145 7.145 23 C -0.144 4.144 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.157 0.843 32 H 0.142 0.858 33 H 0.402 0.598 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.056 0.944 38 H -0.002 1.002 39 H -0.002 1.002 40 H 0.264 0.736 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.721 -24.990 -0.009 25.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.024 4.024 4 O -0.243 6.243 5 C 0.044 3.956 6 C -0.175 4.175 7 C -0.165 4.165 8 C 0.045 3.955 9 N -0.376 5.376 10 C 0.015 3.985 11 C -0.144 4.144 12 C -0.010 4.010 13 C -0.583 4.583 14 H 0.077 0.923 15 C -0.198 4.198 16 N -0.571 5.571 17 Si 0.788 3.212 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.193 1.193 21 C 0.014 3.986 22 F -0.124 7.124 23 C -0.164 4.164 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.174 0.826 32 H 0.159 0.841 33 H 0.237 0.763 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.073 0.927 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.871 -24.889 -0.009 25.572 hybrid contribution 0.948 1.276 0.000 1.590 sum -4.923 -23.612 -0.010 24.120 Atomic orbital electron populations 1.21691 0.93030 1.03131 1.02669 1.21486 0.96963 0.93942 1.03446 1.23123 0.77080 0.99927 1.02317 1.86015 1.22726 1.26163 1.89407 1.18355 0.91099 0.84848 1.01342 1.21303 1.01284 0.90672 1.04278 1.20587 0.91236 0.99112 1.05570 1.18020 0.92871 0.84953 0.99657 1.44737 1.08653 1.01878 1.82288 1.21290 0.93995 0.82453 1.00801 1.21583 0.98160 0.93450 1.01207 1.18907 0.94814 0.91831 0.95426 1.21649 0.93703 0.92243 1.50754 0.92283 1.25953 0.96644 1.02435 0.94765 1.70073 1.12396 1.23128 1.51479 0.85525 0.78622 0.77937 0.79113 1.19296 1.20807 1.19281 1.16840 0.76530 0.92794 1.12395 1.91426 1.29144 1.97060 1.94810 1.20105 0.92996 0.96675 1.06576 0.91034 0.91956 0.91962 0.91103 0.91104 0.91172 0.91164 0.82581 0.84054 0.76278 0.92352 0.92349 0.92498 0.92495 0.98384 0.98376 0.92714 0.83213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 71.98 0.71 -0.43 16 2 C -0.12 -1.33 6.30 30.59 0.19 -1.13 16 3 C 0.05 0.70 4.74 71.98 0.34 1.04 16 4 O -0.33 -6.75 10.14 -93.57 -0.95 -7.70 16 5 C 0.09 2.05 6.69 22.49 0.15 2.20 16 6 C -0.16 -3.30 9.03 22.36 0.20 -3.10 16 7 C -0.14 -3.54 9.31 22.38 0.21 -3.33 16 8 C 0.15 4.19 6.66 38.14 0.25 4.45 16 9 N -0.74 -22.16 5.75 -339.02 -1.95 -24.11 16 10 C 0.14 4.52 4.92 86.38 0.42 4.95 16 11 C -0.11 -4.17 5.27 30.60 0.16 -4.01 16 12 C 0.03 1.42 4.97 29.85 0.15 1.57 16 13 C -0.55 -30.63 9.11 25.60 0.23 -30.40 16 14 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 15 C 0.00 0.00 5.46 84.65 0.46 0.47 16 16 N -0.93 -55.85 13.29 21.45 0.28 -55.56 16 17 Si 0.96 43.92 29.54 68.60 2.03 45.94 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 C 0.04 1.05 7.31 22.47 0.16 1.21 16 22 F -0.15 -4.14 16.64 44.97 0.75 -3.39 16 23 C -0.14 -3.49 9.96 22.39 0.22 -3.27 16 24 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.06 0.44 8.14 -2.39 -0.02 0.43 16 26 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 30 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 31 H 0.16 2.41 6.29 -2.91 -0.02 2.39 16 32 H 0.14 3.35 6.73 -2.91 -0.02 3.33 16 33 H 0.40 11.63 7.96 -92.71 -0.74 10.90 16 34 H 0.06 1.89 7.94 -2.39 -0.02 1.87 16 35 H 0.06 1.89 7.96 -2.39 -0.02 1.87 16 36 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 39 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 40 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 41 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -63.48 345.89 4.32 -59.16 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.28 Total: 15.44 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 3.88 Total: -29.78 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -1.66 Total: -79.67 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.95 Total: -7.70 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.75 Total: -3.39 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -63.48 4.32 -59.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168436186.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.700 kcal (2) G-P(sol) polarization free energy of solvation -63.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds