Wall clock time and date at job start Tue Mar 31 2020 05:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47191 * 2 1 4 4 C 1.53000 * 109.47042 * 240.00671 * 2 1 3 5 5 C 1.52993 * 109.47615 * 120.00503 * 2 1 3 6 6 H 1.09003 * 109.47304 * 305.37869 * 5 2 1 7 7 C 1.53002 * 109.47403 * 185.38192 * 5 2 1 8 8 O 1.42906 * 109.46876 * 301.94297 * 7 5 2 9 9 N 1.46504 * 109.47415 * 65.38105 * 5 2 1 10 10 C 1.39881 * 120.00066 * 205.00567 * 9 5 2 11 11 C 1.39100 * 119.96371 * 359.97438 * 10 9 5 12 12 C 1.38619 * 120.47011 * 180.02562 * 11 10 9 13 13 C 1.37582 * 120.38312 * 359.97438 * 12 11 10 14 14 C 1.40788 * 119.90812 * 359.97438 * 13 12 11 15 15 C 1.41328 * 120.22642 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99555 * 154.66202 * 15 14 13 17 17 C 1.39918 * 119.99890 * 334.66796 * 15 14 13 18 18 N 1.30845 * 120.00241 * 343.33187 * 17 15 14 19 19 Si 1.86805 * 119.99747 * 163.33815 * 17 15 14 20 20 H 1.48496 * 109.47063 * 89.99637 * 19 17 15 21 21 H 1.48500 * 109.47068 * 209.99407 * 19 17 15 22 22 H 1.48499 * 109.47231 * 329.99546 * 19 17 15 23 23 C 1.38596 * 119.96237 * 180.25809 * 10 9 5 24 24 F 1.35096 * 120.18714 * 0.02562 * 23 10 9 25 25 H 1.09005 * 109.46986 * 299.99405 * 1 2 3 26 26 H 1.08997 * 109.47562 * 59.99417 * 1 2 3 27 27 H 1.08997 * 109.46627 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47489 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47343 * 300.00716 * 3 2 1 30 30 H 1.09005 * 109.46670 * 60.00401 * 3 2 1 31 31 H 1.09000 * 109.47038 * 287.98476 * 4 2 1 32 32 H 1.09000 * 109.47627 * 47.98615 * 4 2 1 33 33 H 1.09004 * 109.47174 * 167.98651 * 4 2 1 34 34 H 1.08998 * 109.47380 * 61.94300 * 7 5 2 35 35 H 1.09002 * 109.47441 * 181.94359 * 7 5 2 36 36 H 0.96700 * 113.99407 * 180.02562 * 8 7 5 37 37 H 0.97002 * 119.99737 * 24.99718 * 9 5 2 38 38 H 1.08001 * 119.76353 * 0.02562 * 11 10 9 39 39 H 1.07993 * 119.80630 * 179.97438 * 12 11 10 40 40 H 1.08000 * 120.04426 * 180.02562 * 13 12 11 41 41 H 0.97005 * 120.00486 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2491 6 1 1.6003 -0.2662 2.1366 7 6 3.5641 -0.6052 1.3185 8 8 4.1386 -1.1613 0.1341 9 7 1.6605 -2.1349 1.1860 10 6 1.5292 -2.8771 2.3644 11 6 1.7598 -2.2723 3.5957 12 6 1.6332 -2.9980 4.7700 13 6 1.2771 -4.3264 4.7321 14 6 1.0389 -4.9543 3.4947 15 6 0.6722 -6.3184 3.4480 16 1 0.1082 -6.6974 2.6086 17 6 1.0398 -7.1777 4.4893 18 7 1.9788 -6.8237 5.3290 19 14 0.1902 -8.8303 4.6804 20 1 0.9278 -9.8588 3.9037 21 1 0.1700 -9.2135 6.1150 22 1 -1.2025 -8.7323 4.1746 23 6 1.1752 -4.2157 2.3036 24 9 0.9568 -4.8069 1.1087 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.8619 -1.7918 -1.1490 32 1 1.5126 -0.3457 -2.1263 33 1 3.1088 -0.5396 -1.3628 34 1 3.8452 0.4448 1.4003 35 1 3.9306 -1.1483 2.1897 36 1 5.1045 -1.1220 0.1097 37 1 1.5000 -2.5561 0.3271 38 1 2.0394 -1.2300 3.6371 39 1 1.8152 -2.5178 5.7200 40 1 1.1797 -4.8865 5.6504 41 1 2.2339 -7.4196 6.0507 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168557902.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:17 Heat of formation + Delta-G solvation = -101.760104 kcal Electronic energy + Delta-G solvation = -22895.712187 eV Core-core repulsion = 19495.597934 eV Total energy + Delta-G solvation = -3400.114253 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.04239 -40.51653 -38.85161 -36.63934 -36.03169 -34.36544 -31.42964 -30.37292 -28.99893 -28.09613 -27.27069 -27.13285 -23.94176 -22.67659 -22.20273 -19.62906 -19.30966 -18.27054 -17.86124 -17.65376 -16.92395 -16.58997 -16.09491 -15.95141 -15.46493 -15.23977 -15.05868 -14.59984 -14.33986 -14.12097 -13.73847 -13.70058 -13.44702 -13.38330 -12.95434 -12.92111 -12.87023 -12.74661 -12.47398 -12.42346 -12.11415 -11.77052 -11.66650 -11.52709 -11.43152 -11.25987 -11.08540 -10.59525 -10.44501 -9.29355 -8.68533 -7.93128 -6.40536 0.89709 1.18090 1.36370 1.48490 1.54113 2.19824 2.68294 2.71525 3.49385 3.65175 3.73482 3.94208 4.08850 4.13729 4.41830 4.44686 4.50960 4.58084 4.70612 4.81504 4.84277 4.87213 4.88822 4.99387 5.04489 5.10785 5.13660 5.15294 5.29183 5.30402 5.34518 5.46772 5.58623 5.68145 5.77814 5.94535 6.11317 6.21663 6.52000 6.75314 6.84950 6.91045 6.99612 7.11645 8.29194 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029675 B = 0.004490 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.327075 B = 6234.890053 C = 6480.177713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 C -0.134 4.134 4 C -0.135 4.135 5 C 0.163 3.837 6 H 0.086 0.914 7 C 0.061 3.939 8 O -0.568 6.568 9 N -0.736 5.736 10 C 0.218 3.782 11 C -0.283 4.283 12 C -0.071 4.071 13 C -0.213 4.213 14 C 0.090 3.910 15 C -0.497 4.497 16 H 0.064 0.936 17 C 0.040 3.960 18 N -0.815 5.815 19 Si 0.984 3.016 20 H -0.263 1.263 21 H -0.257 1.257 22 H -0.262 1.262 23 C -0.137 4.137 24 F -0.177 7.177 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.032 0.968 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.026 0.974 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.029 0.971 36 H 0.383 0.617 37 H 0.391 0.609 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.108 0.892 41 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.466 13.901 -5.884 15.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.066 4.066 3 C -0.192 4.192 4 C -0.192 4.192 5 C 0.058 3.942 6 H 0.104 0.896 7 C -0.018 4.018 8 O -0.375 6.375 9 N -0.367 5.367 10 C 0.115 3.885 11 C -0.307 4.307 12 C -0.090 4.090 13 C -0.234 4.234 14 C 0.087 3.913 15 C -0.526 4.526 16 H 0.082 0.918 17 C -0.176 4.176 18 N -0.440 5.440 19 Si 0.804 3.196 20 H -0.188 1.188 21 H -0.181 1.181 22 H -0.186 1.186 23 C -0.162 4.162 24 F -0.157 7.157 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.047 0.953 36 H 0.232 0.768 37 H 0.227 0.773 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.126 0.874 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.027 13.893 -5.814 15.196 hybrid contribution 0.163 -1.395 -0.159 1.414 sum 2.190 12.498 -5.972 14.024 Atomic orbital electron populations 1.21869 0.94828 1.00890 1.02156 1.20689 0.95257 0.96532 0.94087 1.21875 1.01608 0.93061 1.02645 1.21958 1.03118 0.98272 0.95877 1.21127 0.92763 0.81235 0.99067 0.89580 1.22752 0.94109 0.97798 0.87144 1.86623 1.25771 1.85017 1.40131 1.44615 1.77710 1.09842 1.04579 1.17586 0.94257 0.88186 0.88488 1.20081 1.20703 1.00072 0.89798 1.20818 0.97010 0.93552 0.97570 1.20957 1.11248 0.94596 0.96603 1.17777 0.89404 0.93518 0.90632 1.19645 1.32632 0.94171 1.06186 0.91752 1.26704 0.93433 1.04111 0.93309 1.69872 1.22005 1.38754 1.13340 0.85196 0.79337 0.76103 0.79012 1.18791 1.18054 1.18638 1.17647 1.25695 0.92453 0.80391 1.91153 1.94637 1.85045 1.44872 0.92482 0.91304 0.94835 0.91485 0.91455 0.91873 0.95514 0.92907 0.89465 0.90270 0.95301 0.76850 0.77331 0.85413 0.85919 0.87433 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.33 71.98 0.60 -2.73 16 2 C -0.07 -1.48 0.61 -52.18 -0.03 -1.52 16 3 C -0.13 -2.23 7.94 71.98 0.57 -1.66 16 4 C -0.14 -3.29 7.42 71.98 0.53 -2.76 16 5 C 0.16 4.55 1.47 44.99 0.07 4.61 16 6 H 0.09 2.39 6.48 -2.39 -0.02 2.37 16 7 C 0.06 1.49 6.20 71.98 0.45 1.93 16 8 O -0.57 -13.69 9.87 -148.98 -1.47 -15.16 16 9 N -0.74 -27.52 4.53 -318.88 -1.44 -28.96 16 10 C 0.22 10.01 6.64 38.15 0.25 10.26 16 11 C -0.28 -12.05 8.85 22.57 0.20 -11.85 16 12 C -0.07 -3.21 10.01 22.21 0.22 -2.99 16 13 C -0.21 -11.41 8.68 22.74 0.20 -11.21 16 14 C 0.09 5.21 5.57 -21.27 -0.12 5.09 16 15 C -0.50 -28.90 8.77 23.44 0.21 -28.69 16 16 H 0.06 3.77 7.75 -2.91 -0.02 3.75 16 17 C 0.04 2.12 5.16 85.25 0.44 2.56 16 18 N -0.81 -43.28 10.94 21.82 0.24 -43.04 16 19 Si 0.98 39.72 29.59 68.60 2.03 41.75 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 21 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 22 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 23 C -0.14 -7.49 7.31 22.99 0.17 -7.32 16 24 F -0.18 -9.78 16.09 44.97 0.72 -9.06 16 25 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.03 0.96 7.76 -2.39 -0.02 0.94 16 28 H 0.07 1.02 6.39 -2.39 -0.02 1.01 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.03 0.78 5.89 -2.39 -0.01 0.77 16 32 H 0.05 1.13 8.09 -2.39 -0.02 1.11 16 33 H 0.09 2.05 5.69 -2.39 -0.01 2.04 16 34 H 0.08 1.41 6.46 -2.39 -0.02 1.39 16 35 H 0.03 0.83 7.73 -2.39 -0.02 0.82 16 36 H 0.38 6.06 9.12 -74.06 -0.68 5.38 16 37 H 0.39 15.31 5.89 -92.71 -0.55 14.77 16 38 H 0.13 4.50 6.11 -2.91 -0.02 4.48 16 39 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 40 H 0.11 5.94 6.17 -2.91 -0.02 5.92 16 41 H 0.29 13.79 8.30 -92.70 -0.77 13.02 16 Total: -1.00 -65.70 323.75 3.67 -62.03 By element: Atomic # 1 Polarization: 38.86 SS G_CDS: -0.16 Total: 38.71 kcal Atomic # 6 Polarization: -50.02 SS G_CDS: 3.75 Total: -46.26 kcal Atomic # 7 Polarization: -70.79 SS G_CDS: -1.21 Total: -72.00 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -1.47 Total: -15.16 kcal Atomic # 9 Polarization: -9.78 SS G_CDS: 0.72 Total: -9.06 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -65.70 3.67 -62.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168557902.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.728 kcal (2) G-P(sol) polarization free energy of solvation -65.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds