Wall clock time and date at job start Tue Mar 31 2020 05:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47240 * 2 1 4 4 O 1.42893 * 109.47318 * 120.00706 * 2 1 3 5 5 C 1.42896 * 114.00253 * 149.99802 * 4 2 1 6 6 C 1.53002 * 109.47289 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47119 * 180.02562 * 6 5 4 8 8 N 1.46507 * 109.46918 * 180.02562 * 7 6 5 9 9 C 1.39887 * 119.99978 * 180.02562 * 8 7 6 10 10 C 1.39098 * 119.96029 * 0.02562 * 9 8 7 11 11 C 1.38617 * 120.46956 * 179.97438 * 10 9 8 12 12 C 1.37585 * 120.38212 * 359.71211 * 11 10 9 13 13 C 1.40793 * 119.90860 * 0.56454 * 12 11 10 14 14 C 1.41315 * 120.22702 * 179.71628 * 13 12 11 15 15 H 1.08000 * 119.99995 * 156.15462 * 14 13 12 16 16 C 1.39919 * 120.00285 * 335.87456 * 14 13 12 17 17 N 1.30854 * 119.99998 * 341.38750 * 16 14 13 18 18 Si 1.86798 * 120.00362 * 161.38537 * 16 14 13 19 19 H 1.48499 * 109.47159 * 90.00071 * 18 16 14 20 20 H 1.48495 * 109.47544 * 210.00684 * 18 16 14 21 21 H 1.48505 * 109.46735 * 330.00317 * 18 16 14 22 22 C 1.38589 * 119.96026 * 179.97438 * 9 8 7 23 23 F 1.35093 * 120.19395 * 359.97438 * 22 9 8 24 24 H 1.08998 * 109.47059 * 299.99794 * 1 2 3 25 25 H 1.09005 * 109.47392 * 59.99548 * 1 2 3 26 26 H 1.09000 * 109.47244 * 179.97438 * 1 2 3 27 27 H 1.09011 * 109.46850 * 240.00471 * 2 1 3 28 28 H 1.08996 * 109.47444 * 300.00432 * 3 2 1 29 29 H 1.09002 * 109.46834 * 60.00641 * 3 2 1 30 30 H 1.09002 * 109.47080 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47368 * 60.00118 * 5 4 2 32 32 H 1.09004 * 109.47533 * 299.99739 * 5 4 2 33 33 H 1.08995 * 109.47393 * 59.99779 * 6 5 4 34 34 H 1.09001 * 109.47081 * 299.99718 * 6 5 4 35 35 H 1.08995 * 109.47589 * 60.00027 * 7 6 5 36 36 H 1.08996 * 109.47147 * 299.99424 * 7 6 5 37 37 H 0.96999 * 119.99941 * 359.97438 * 8 7 6 38 38 H 1.08006 * 119.76292 * 359.95876 * 10 9 8 39 39 H 1.08002 * 119.80808 * 180.02562 * 11 10 9 40 40 H 1.08000 * 120.04473 * 180.28116 * 12 11 10 41 41 H 0.97001 * 120.00180 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 3.2660 -1.3246 0.9884 6 6 3.6755 -2.0094 2.2939 7 6 5.0244 -2.7057 2.1032 8 7 5.4162 -3.3619 3.3531 9 6 6.6219 -4.0677 3.4245 10 6 7.4484 -4.1455 2.3084 11 6 8.6456 -4.8416 2.3675 12 6 9.0343 -5.4598 3.5336 13 6 8.2073 -5.3963 4.6712 14 6 8.5971 -6.0338 5.8706 15 1 8.2033 -5.6922 6.8165 16 6 9.4888 -7.1114 5.8324 17 7 9.6806 -7.7624 4.7137 18 14 10.4054 -7.6207 7.3783 19 1 9.6058 -8.6300 8.1180 20 1 11.7183 -8.2057 7.0054 21 1 10.6207 -6.4309 8.2406 22 6 6.9919 -4.6878 4.6074 23 9 6.1917 -4.6124 5.6932 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.6767 1.9563 -0.8899 29 1 1.6768 1.9562 0.8901 30 1 3.1301 1.4424 0.0005 31 1 4.0200 -0.5875 0.7123 32 1 3.1809 -2.0708 0.1984 33 1 2.9214 -2.7465 2.5696 34 1 3.7605 -1.2636 3.0842 35 1 5.7783 -1.9683 1.8278 36 1 4.9398 -3.4515 1.3128 37 1 4.8399 -3.3064 4.1314 38 1 7.1551 -3.6603 1.3891 39 1 9.2794 -4.8948 1.4946 40 1 9.9704 -5.9969 3.5748 41 1 10.2991 -8.5093 4.6870 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168678926.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:11 Heat of formation + Delta-G solvation = -93.682367 kcal Electronic energy + Delta-G solvation = -21084.439339 eV Core-core repulsion = 17684.675363 eV Total energy + Delta-G solvation = -3399.763976 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.05648 -38.71683 -37.68855 -35.70837 -33.84471 -32.96798 -31.16048 -29.51731 -27.68455 -27.41797 -25.34418 -24.51131 -21.96038 -21.50456 -20.56413 -20.26905 -17.44986 -17.04571 -16.12635 -15.99114 -15.71139 -15.28665 -14.96083 -14.73537 -14.44500 -13.94730 -13.71574 -13.32595 -13.16302 -12.98815 -12.74505 -12.70777 -12.49829 -11.90763 -11.82613 -11.76928 -11.48109 -11.41204 -11.24578 -11.04852 -10.96049 -10.87922 -10.69418 -10.44991 -9.84933 -9.74658 -9.52734 -9.31418 -8.82453 -7.37967 -6.82707 -6.26235 -4.38695 2.73794 3.02548 3.06866 3.11971 3.24006 3.34416 3.91760 4.23042 4.59457 4.59668 4.72611 4.88326 4.91519 5.10335 5.12882 5.28178 5.32061 5.47234 5.52025 5.53816 5.57716 5.62162 5.73305 5.87880 5.91568 5.98501 6.16686 6.17417 6.24360 6.67914 6.89371 6.97333 7.06520 7.17731 7.29209 7.62090 7.75554 8.03149 8.12462 8.32667 8.49366 8.64754 8.79869 8.97414 10.12956 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.045528 B = 0.002684 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.858382 B =10430.830059 C =10804.391678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.080 3.920 3 C -0.176 4.176 4 O -0.384 6.384 5 C 0.068 3.932 6 C -0.129 4.129 7 C 0.142 3.858 8 N -0.760 5.760 9 C 0.205 3.795 10 C -0.288 4.288 11 C -0.077 4.077 12 C -0.185 4.185 13 C 0.118 3.882 14 C -0.452 4.452 15 H 0.081 0.919 16 C 0.078 3.922 17 N -0.784 5.784 18 Si 0.911 3.089 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.259 1.259 22 C -0.099 4.099 23 F -0.168 7.168 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.393 0.607 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.122 0.878 41 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.254 10.995 -8.770 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.022 3.978 3 C -0.233 4.233 4 O -0.303 6.303 5 C -0.010 4.010 6 C -0.167 4.167 7 C 0.016 3.984 8 N -0.394 5.394 9 C 0.106 3.894 10 C -0.311 4.311 11 C -0.097 4.097 12 C -0.206 4.206 13 C 0.114 3.886 14 C -0.481 4.481 15 H 0.100 0.900 16 C -0.141 4.141 17 N -0.409 5.409 18 Si 0.734 3.266 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.123 4.123 23 F -0.147 7.147 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.227 0.773 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.139 0.861 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.249 10.845 -8.855 17.351 hybrid contribution 0.216 -0.283 0.758 0.838 sum -10.033 10.562 -8.097 16.667 Atomic orbital electron populations 1.21864 0.93704 1.02724 1.02416 1.22070 0.94956 0.92460 0.88303 1.22306 1.01681 0.96841 1.02492 1.87916 1.36829 1.70022 1.35560 1.22400 0.85393 0.95401 0.97758 1.21663 0.97371 1.00284 0.97395 1.20893 0.93862 0.95512 0.88117 1.44255 1.22269 1.60064 1.12843 1.17414 0.86080 0.92615 0.93318 1.19721 0.99535 1.15219 0.96632 1.20468 0.95249 0.96985 0.96954 1.21019 1.01290 1.05547 0.92697 1.17404 0.88006 0.89135 0.94070 1.19500 1.22190 1.12131 0.94273 0.90044 1.25925 0.95295 0.95144 0.97770 1.69860 1.28243 1.15045 1.27725 0.86272 0.78956 0.79571 0.81754 1.19382 1.19979 1.18310 1.17263 0.94338 1.17526 0.83161 1.91198 1.73199 1.96265 1.54052 0.91800 0.91364 0.91979 0.92259 0.91753 0.91778 0.92397 0.93128 0.93076 0.90662 0.90697 0.92969 0.92958 0.77329 0.88769 0.88963 0.86055 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.56 37.16 0.36 -0.76 16 2 C 0.08 0.70 3.34 -26.73 -0.09 0.61 16 3 C -0.18 -1.36 9.53 37.16 0.35 -1.00 16 4 O -0.38 -4.43 9.99 -35.23 -0.35 -4.78 16 5 C 0.07 0.73 5.75 37.16 0.21 0.94 16 6 C -0.13 -1.59 5.70 -26.73 -0.15 -1.74 16 7 C 0.14 2.09 4.91 -4.04 -0.02 2.07 16 8 N -0.76 -14.37 5.74 -58.61 -0.34 -14.71 16 9 C 0.21 4.76 6.65 -83.73 -0.56 4.20 16 10 C -0.29 -6.43 9.32 -39.12 -0.36 -6.80 16 11 C -0.08 -1.80 10.01 -39.68 -0.40 -2.20 16 12 C -0.19 -4.82 8.70 -38.85 -0.34 -5.16 16 13 C 0.12 3.24 5.58 -106.78 -0.60 2.64 16 14 C -0.45 -12.39 8.78 -37.78 -0.33 -12.72 16 15 H 0.08 2.21 7.72 -52.49 -0.41 1.81 16 16 C 0.08 1.97 5.12 -17.34 -0.09 1.88 16 17 N -0.78 -20.20 10.98 55.55 0.61 -19.59 16 18 Si 0.91 18.81 29.60 -169.99 -5.03 13.78 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 C -0.10 -2.58 7.31 -38.47 -0.28 -2.86 16 23 F -0.17 -4.32 16.06 2.25 0.04 -4.29 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.47 7.79 -51.92 -0.40 0.07 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 31 H 0.05 0.50 7.87 -51.93 -0.41 0.09 16 32 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.76 7.94 -51.93 -0.41 0.35 16 36 H 0.05 0.77 7.94 -51.93 -0.41 0.36 16 37 H 0.39 7.17 7.95 -40.82 -0.32 6.85 16 38 H 0.09 1.85 6.70 -52.48 -0.35 1.50 16 39 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.12 3.21 6.16 -52.49 -0.32 2.89 16 41 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 LS Contribution 343.33 15.07 5.17 5.17 Total: -1.00 -28.92 343.33 -8.58 -37.50 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -6.39 Total: 7.80 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -2.29 Total: -20.88 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.27 Total: -34.29 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.35 Total: -4.78 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.04 Total: -4.29 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.92 -8.58 -37.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168678926.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.185 kcal (2) G-P(sol) polarization free energy of solvation -28.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds