Wall clock time and date at job start Tue Mar 31 2020 05:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47240 * 2 1 4 4 O 1.42893 * 109.47318 * 120.00706 * 2 1 3 5 5 C 1.42896 * 114.00253 * 149.99802 * 4 2 1 6 6 C 1.53002 * 109.47289 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47119 * 180.02562 * 6 5 4 8 8 N 1.46507 * 109.46918 * 180.02562 * 7 6 5 9 9 C 1.39887 * 119.99978 * 180.02562 * 8 7 6 10 10 C 1.39098 * 119.96029 * 0.02562 * 9 8 7 11 11 C 1.38617 * 120.46956 * 179.97438 * 10 9 8 12 12 C 1.37585 * 120.38212 * 359.71211 * 11 10 9 13 13 C 1.40793 * 119.90860 * 0.56454 * 12 11 10 14 14 C 1.41315 * 120.22702 * 179.71628 * 13 12 11 15 15 H 1.08000 * 119.99995 * 156.15462 * 14 13 12 16 16 C 1.39919 * 120.00285 * 335.87456 * 14 13 12 17 17 N 1.30854 * 119.99998 * 341.38750 * 16 14 13 18 18 Si 1.86798 * 120.00362 * 161.38537 * 16 14 13 19 19 H 1.48499 * 109.47159 * 90.00071 * 18 16 14 20 20 H 1.48495 * 109.47544 * 210.00684 * 18 16 14 21 21 H 1.48505 * 109.46735 * 330.00317 * 18 16 14 22 22 C 1.38589 * 119.96026 * 179.97438 * 9 8 7 23 23 F 1.35093 * 120.19395 * 359.97438 * 22 9 8 24 24 H 1.08998 * 109.47059 * 299.99794 * 1 2 3 25 25 H 1.09005 * 109.47392 * 59.99548 * 1 2 3 26 26 H 1.09000 * 109.47244 * 179.97438 * 1 2 3 27 27 H 1.09011 * 109.46850 * 240.00471 * 2 1 3 28 28 H 1.08996 * 109.47444 * 300.00432 * 3 2 1 29 29 H 1.09002 * 109.46834 * 60.00641 * 3 2 1 30 30 H 1.09002 * 109.47080 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47368 * 60.00118 * 5 4 2 32 32 H 1.09004 * 109.47533 * 299.99739 * 5 4 2 33 33 H 1.08995 * 109.47393 * 59.99779 * 6 5 4 34 34 H 1.09001 * 109.47081 * 299.99718 * 6 5 4 35 35 H 1.08995 * 109.47589 * 60.00027 * 7 6 5 36 36 H 1.08996 * 109.47147 * 299.99424 * 7 6 5 37 37 H 0.96999 * 119.99941 * 359.97438 * 8 7 6 38 38 H 1.08006 * 119.76292 * 359.95876 * 10 9 8 39 39 H 1.08002 * 119.80808 * 180.02562 * 11 10 9 40 40 H 1.08000 * 120.04473 * 180.28116 * 12 11 10 41 41 H 0.97001 * 120.00180 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 3.2660 -1.3246 0.9884 6 6 3.6755 -2.0094 2.2939 7 6 5.0244 -2.7057 2.1032 8 7 5.4162 -3.3619 3.3531 9 6 6.6219 -4.0677 3.4245 10 6 7.4484 -4.1455 2.3084 11 6 8.6456 -4.8416 2.3675 12 6 9.0343 -5.4598 3.5336 13 6 8.2073 -5.3963 4.6712 14 6 8.5971 -6.0338 5.8706 15 1 8.2033 -5.6922 6.8165 16 6 9.4888 -7.1114 5.8324 17 7 9.6806 -7.7624 4.7137 18 14 10.4054 -7.6207 7.3783 19 1 9.6058 -8.6300 8.1180 20 1 11.7183 -8.2057 7.0054 21 1 10.6207 -6.4309 8.2406 22 6 6.9919 -4.6878 4.6074 23 9 6.1917 -4.6124 5.6932 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.6767 1.9563 -0.8899 29 1 1.6768 1.9562 0.8901 30 1 3.1301 1.4424 0.0005 31 1 4.0200 -0.5875 0.7123 32 1 3.1809 -2.0708 0.1984 33 1 2.9214 -2.7465 2.5696 34 1 3.7605 -1.2636 3.0842 35 1 5.7783 -1.9683 1.8278 36 1 4.9398 -3.4515 1.3128 37 1 4.8399 -3.3064 4.1314 38 1 7.1551 -3.6603 1.3891 39 1 9.2794 -4.8948 1.4946 40 1 9.9704 -5.9969 3.5748 41 1 10.2991 -8.5093 4.6870 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168678926.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:10 Heat of formation + Delta-G solvation = -109.513857 kcal Electronic energy + Delta-G solvation = -21085.125843 eV Core-core repulsion = 17684.675363 eV Total energy + Delta-G solvation = -3400.450481 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.05607 -39.66777 -39.28721 -37.23458 -35.41687 -34.09242 -32.34036 -31.43051 -29.16827 -28.10247 -27.25268 -25.78846 -23.21909 -22.38145 -22.32304 -21.78498 -19.28478 -17.98027 -17.83765 -17.42775 -17.01380 -16.89250 -16.37311 -15.99999 -15.77512 -15.47028 -15.19873 -14.90320 -14.58402 -14.26849 -13.76557 -13.70838 -13.57530 -13.42040 -13.11373 -13.03864 -12.82057 -12.76825 -12.47764 -12.41495 -12.28077 -12.11629 -11.94343 -11.74108 -11.57138 -11.39558 -11.13112 -10.55270 -10.50556 -9.32555 -8.71048 -8.02077 -6.40442 0.88776 1.14946 1.37313 1.48945 1.55265 2.19680 2.39571 2.69373 2.94580 3.63670 3.93870 3.95756 4.06092 4.11011 4.13773 4.21970 4.31321 4.46903 4.51879 4.54607 4.64340 4.75119 4.84425 4.87049 4.91914 4.94946 5.03021 5.09121 5.11429 5.13310 5.27498 5.29338 5.33691 5.47928 5.74513 5.90307 6.10220 6.19196 6.32471 6.47028 6.72012 6.82561 6.87103 7.07655 8.26946 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.045528 B = 0.002684 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.858382 B =10430.830059 C =10804.391678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.071 3.929 3 C -0.173 4.173 4 O -0.406 6.406 5 C 0.070 3.930 6 C -0.119 4.119 7 C 0.139 3.861 8 N -0.756 5.756 9 C 0.211 3.789 10 C -0.284 4.284 11 C -0.071 4.071 12 C -0.213 4.213 13 C 0.089 3.911 14 C -0.494 4.494 15 H 0.067 0.933 16 C 0.040 3.960 17 N -0.810 5.810 18 Si 0.984 3.016 19 H -0.262 1.262 20 H -0.257 1.257 21 H -0.262 1.262 22 C -0.137 4.137 23 F -0.175 7.175 24 H 0.056 0.944 25 H 0.089 0.911 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.394 0.606 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.109 0.891 41 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.502 11.773 -10.357 18.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.014 3.986 3 C -0.231 4.231 4 O -0.326 6.326 5 C -0.007 4.007 6 C -0.157 4.157 7 C 0.016 3.984 8 N -0.388 5.388 9 C 0.109 3.891 10 C -0.307 4.307 11 C -0.090 4.090 12 C -0.234 4.234 13 C 0.085 3.915 14 C -0.523 4.523 15 H 0.085 0.915 16 C -0.177 4.177 17 N -0.435 5.435 18 Si 0.804 3.196 19 H -0.187 1.187 20 H -0.181 1.181 21 H -0.186 1.186 22 C -0.162 4.162 23 F -0.154 7.154 24 H 0.075 0.925 25 H 0.107 0.893 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.228 0.772 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.127 0.873 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.536 11.651 -10.475 18.880 hybrid contribution 0.171 -0.434 1.123 1.216 sum -10.365 11.216 -9.352 17.908 Atomic orbital electron populations 1.21884 0.92932 1.02639 1.03132 1.22316 0.95665 0.92862 0.87788 1.22291 1.01461 0.96297 1.03035 1.87884 1.37059 1.70455 1.37224 1.22350 0.85640 0.95868 0.96798 1.21522 0.95821 0.99923 0.98426 1.21102 0.95350 0.95733 0.86253 1.44455 1.20742 1.59092 1.14525 1.17559 0.87393 0.91734 0.92401 1.20108 0.98728 1.14376 0.97487 1.20832 0.95820 0.95383 0.96917 1.20989 1.01230 1.07470 0.93703 1.17791 0.88958 0.89869 0.94891 1.19658 1.24706 1.14028 0.93907 0.91499 1.26749 0.95314 0.94351 1.01286 1.69878 1.28630 1.15429 1.29577 0.85185 0.78084 0.79012 0.77321 1.18700 1.18083 1.18585 1.17600 0.94767 1.19517 0.84300 1.91157 1.73250 1.96441 1.54584 0.92489 0.89263 0.92462 0.91181 0.89888 0.92580 0.92703 0.92084 0.91990 0.91157 0.91104 0.91985 0.92194 0.77191 0.85259 0.85763 0.87306 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.56 71.98 0.69 -1.27 16 2 C 0.07 1.10 3.34 30.59 0.10 1.20 16 3 C -0.17 -2.32 9.53 71.98 0.69 -1.64 16 4 O -0.41 -8.68 9.99 -148.98 -1.49 -10.17 16 5 C 0.07 1.34 5.75 71.98 0.41 1.76 16 6 C -0.12 -2.70 5.70 30.60 0.17 -2.52 16 7 C 0.14 3.77 4.91 86.38 0.42 4.20 16 8 N -0.76 -27.64 5.74 -339.34 -1.95 -29.59 16 9 C 0.21 9.66 6.65 38.15 0.25 9.91 16 10 C -0.28 -12.09 9.32 22.57 0.21 -11.88 16 11 C -0.07 -3.20 10.01 22.21 0.22 -2.98 16 12 C -0.21 -11.30 8.70 22.74 0.20 -11.11 16 13 C 0.09 5.05 5.58 -21.26 -0.12 4.93 16 14 C -0.49 -28.28 8.78 23.43 0.21 -28.07 16 15 H 0.07 3.85 7.72 -2.91 -0.02 3.83 16 16 C 0.04 2.05 5.12 85.25 0.44 2.49 16 17 N -0.81 -42.47 10.98 21.82 0.24 -42.23 16 18 Si 0.98 39.04 29.60 68.60 2.03 41.07 16 19 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 20 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 21 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 22 C -0.14 -7.38 7.31 22.99 0.17 -7.21 16 23 F -0.17 -9.35 16.06 44.97 0.72 -8.63 16 24 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 0.93 7.79 -2.38 -0.02 0.91 16 28 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.76 7.87 -2.39 -0.02 0.74 16 31 H 0.06 1.04 7.87 -2.39 -0.02 1.02 16 32 H 0.06 1.05 8.09 -2.39 -0.02 1.03 16 33 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.60 7.94 -2.39 -0.02 1.58 16 36 H 0.06 1.58 7.94 -2.39 -0.02 1.56 16 37 H 0.39 14.20 7.95 -92.71 -0.74 13.46 16 38 H 0.13 4.56 6.70 -2.91 -0.02 4.54 16 39 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 40 H 0.11 5.93 6.16 -2.91 -0.02 5.91 16 41 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 Total: -1.00 -63.95 343.33 3.90 -60.05 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: 0.28 Total: 31.68 kcal Atomic # 6 Polarization: -46.25 SS G_CDS: 4.06 Total: -42.18 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -1.71 Total: -71.81 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -1.49 Total: -10.17 kcal Atomic # 9 Polarization: -9.35 SS G_CDS: 0.72 Total: -8.63 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -63.95 3.90 -60.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168678926.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.464 kcal (2) G-P(sol) polarization free energy of solvation -63.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds