Wall clock time and date at job start Tue Mar 31 2020 05:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53009 * 109.47111 * 2 1 4 4 O 1.42899 * 109.47536 * 120.00181 * 2 1 3 5 5 C 1.42892 * 114.00126 * 89.99883 * 4 2 1 6 6 C 1.53006 * 109.47084 * 180.02562 * 5 4 2 7 7 C 1.53007 * 109.46741 * 179.97438 * 6 5 4 8 8 N 1.46504 * 109.46574 * 180.02562 * 7 6 5 9 9 C 1.39678 * 119.99521 * 179.97438 * 8 7 6 10 10 C 1.39292 * 119.94031 * 359.97438 * 9 8 7 11 11 C 1.38702 * 120.39886 * 179.97438 * 10 9 8 12 12 F 1.35102 * 119.86249 * 179.97438 * 11 10 9 13 13 C 1.37925 * 120.27631 * 0.02562 * 11 10 9 14 14 C 1.40716 * 119.86478 * 0.02562 * 13 11 10 15 15 C 1.41413 * 120.19025 * 180.02562 * 14 13 11 16 16 H 1.07996 * 120.00266 * 24.39157 * 15 14 13 17 17 C 1.39930 * 119.99637 * 204.38915 * 15 14 13 18 18 N 1.30827 * 119.99849 * 17.84888 * 17 15 14 19 19 Si 1.86798 * 119.99870 * 197.84838 * 17 15 14 20 20 H 1.48500 * 109.46892 * 90.00139 * 19 17 15 21 21 H 1.48495 * 109.46876 * 209.99840 * 19 17 15 22 22 H 1.48498 * 109.47060 * 330.00129 * 19 17 15 23 23 C 1.38298 * 119.93623 * 179.97438 * 9 8 7 24 24 H 1.09002 * 109.47027 * 299.99812 * 1 2 3 25 25 H 1.09001 * 109.47730 * 59.99505 * 1 2 3 26 26 H 1.09000 * 109.47253 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47027 * 240.00188 * 2 1 3 28 28 H 1.09003 * 109.47155 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46805 * 300.00481 * 3 2 1 30 30 H 1.08994 * 109.46723 * 60.00279 * 3 2 1 31 31 H 1.09000 * 109.47471 * 60.00310 * 5 4 2 32 32 H 1.08998 * 109.47510 * 300.00211 * 5 4 2 33 33 H 1.08994 * 109.46869 * 60.00283 * 6 5 4 34 34 H 1.08995 * 109.47198 * 299.99928 * 6 5 4 35 35 H 1.08994 * 109.47205 * 60.00492 * 7 6 5 36 36 H 1.09003 * 109.47153 * 299.99576 * 7 6 5 37 37 H 0.96997 * 120.00306 * 0.02562 * 8 7 6 38 38 H 1.07997 * 119.80014 * 359.97216 * 10 9 8 39 39 H 1.07996 * 120.06775 * 179.97438 * 13 11 10 40 40 H 0.97004 * 119.99827 * 179.97438 * 18 17 15 41 41 H 1.08001 * 120.13563 * 359.73298 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2001 -2.0781 0.9885 6 6 2.7080 -2.6926 2.2945 7 6 2.9149 -4.1966 2.1038 8 7 3.4006 -4.7850 3.3545 9 6 3.6633 -6.1550 3.4258 10 6 3.4625 -6.9606 2.3074 11 6 3.7208 -8.3220 2.3675 12 9 3.5217 -9.0933 1.2762 13 6 4.1790 -8.8919 3.5369 14 6 4.3849 -8.0889 4.6740 15 6 4.8550 -8.6659 5.8764 16 1 5.4193 -9.5863 5.8492 17 6 4.5891 -8.0442 7.1015 18 7 3.6377 -7.1504 7.1885 19 14 5.5925 -8.4905 8.6125 20 1 6.7775 -7.5999 8.7005 21 1 4.7567 -8.3238 9.8286 22 1 6.0409 -9.9024 8.5097 23 6 4.1223 -6.7091 4.6069 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 2.9320 -2.2467 0.1986 32 1 1.2539 -2.5434 0.7124 33 1 1.9759 -2.5242 3.0841 34 1 3.6542 -2.2275 2.5710 35 1 3.6468 -4.3654 1.3141 36 1 1.9684 -4.6614 1.8276 37 1 3.5391 -4.2234 4.1331 38 1 3.1035 -6.5225 1.3879 39 1 4.3787 -9.9524 3.5800 40 1 3.4531 -6.7197 8.0378 41 1 4.2822 -6.0840 5.4729 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168681526.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:13 Heat of formation + Delta-G solvation = -95.846008 kcal Electronic energy + Delta-G solvation = -21002.875987 eV Core-core repulsion = 17603.018188 eV Total energy + Delta-G solvation = -3399.857798 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -47.68626 -38.70313 -37.83965 -35.59374 -33.73719 -32.97697 -31.21790 -29.28162 -27.76824 -27.45213 -25.49727 -24.42736 -21.95550 -21.50181 -20.68860 -20.27236 -17.61226 -17.03061 -16.11569 -15.99605 -15.33940 -15.04912 -15.00130 -14.62040 -14.47004 -14.32580 -13.95254 -13.84042 -13.33125 -13.00396 -12.86938 -12.68217 -12.49047 -11.93714 -11.89373 -11.69691 -11.46794 -11.36747 -11.25869 -11.13534 -10.88092 -10.82293 -10.51580 -10.44388 -10.07130 -9.72597 -9.64654 -9.33463 -8.69993 -7.36048 -6.84300 -6.30633 -4.45535 2.74764 2.97427 3.06344 3.09978 3.22339 3.37028 3.90751 4.27322 4.57813 4.61435 4.74477 4.90268 4.93864 5.12771 5.15760 5.29812 5.33851 5.49086 5.54015 5.55450 5.59882 5.64431 5.75909 5.77654 5.89730 5.93457 6.19223 6.20836 6.36687 6.65436 6.80279 7.01193 7.08255 7.18163 7.29898 7.54929 7.71975 7.95850 8.04030 8.32888 8.58887 8.69673 8.86904 8.94686 10.14062 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018949 B = 0.003148 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.302280 B = 8893.102034 C =10124.731674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.080 3.920 3 C -0.150 4.150 4 O -0.384 6.384 5 C 0.067 3.933 6 C -0.128 4.128 7 C 0.138 3.862 8 N -0.756 5.756 9 C 0.240 3.760 10 C -0.334 4.334 11 C 0.142 3.858 12 F -0.169 7.169 13 C -0.289 4.289 14 C 0.157 3.843 15 C -0.457 4.457 16 H 0.081 0.919 17 C 0.078 3.922 18 N -0.785 5.785 19 Si 0.909 3.091 20 H -0.267 1.267 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.240 4.240 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.394 0.606 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.280 0.720 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.320 13.251 -8.801 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.022 3.978 3 C -0.207 4.207 4 O -0.303 6.303 5 C -0.010 4.010 6 C -0.166 4.166 7 C 0.013 3.987 8 N -0.390 5.390 9 C 0.140 3.860 10 C -0.357 4.357 11 C 0.122 3.878 12 F -0.148 7.148 13 C -0.310 4.310 14 C 0.153 3.847 15 C -0.486 4.486 16 H 0.099 0.901 17 C -0.141 4.141 18 N -0.409 5.409 19 Si 0.734 3.266 20 H -0.192 1.192 21 H -0.203 1.203 22 H -0.185 1.185 23 C -0.264 4.264 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.228 0.772 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.091 0.909 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.491 13.480 -8.696 16.417 hybrid contribution 0.195 -0.222 0.533 0.609 sum -3.297 13.258 -8.163 15.915 Atomic orbital electron populations 1.22306 0.96072 1.02472 1.02485 1.22068 0.93625 0.93786 0.88309 1.21864 1.01821 0.94597 1.02413 1.87915 1.86570 1.20293 1.35545 1.22409 0.99519 0.81265 0.97809 1.21659 1.02634 0.94974 0.97362 1.20916 0.98601 0.90863 0.88358 1.44327 1.76215 1.05974 1.12470 1.17276 0.93271 0.82056 0.93417 1.19700 1.24677 0.92355 0.99000 1.17236 1.00058 0.88136 0.82359 1.91322 1.93411 1.75833 1.54222 1.20833 1.17181 0.99034 0.93959 1.17072 0.86112 0.90427 0.91040 1.19574 1.30564 1.08329 0.90141 0.90133 1.25925 0.93638 0.93650 1.00904 1.69859 1.22753 1.20858 1.27441 0.86294 0.80315 0.80246 0.79783 1.19226 1.20319 1.18544 1.20755 1.14172 0.95536 0.95917 0.91767 0.91767 0.92383 0.92281 0.91994 0.91378 0.91795 0.93123 0.93148 0.90632 0.90687 0.93070 0.93066 0.77238 0.88379 0.88070 0.90869 0.85992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 9.53 37.15 0.35 -1.06 16 2 C 0.08 0.72 3.34 -26.73 -0.09 0.63 16 3 C -0.15 -1.14 9.56 37.16 0.36 -0.79 16 4 O -0.38 -4.51 9.99 -35.23 -0.35 -4.87 16 5 C 0.07 0.74 5.75 37.16 0.21 0.95 16 6 C -0.13 -1.59 5.70 -26.72 -0.15 -1.74 16 7 C 0.14 2.07 4.91 -4.04 -0.02 2.05 16 8 N -0.76 -14.06 5.73 -58.69 -0.34 -14.39 16 9 C 0.24 5.51 6.64 -83.87 -0.56 4.95 16 10 C -0.33 -7.74 9.30 -39.02 -0.36 -8.10 16 11 C 0.14 3.46 7.28 -39.52 -0.29 3.18 16 12 F -0.17 -3.90 17.26 2.25 0.04 -3.86 16 13 C -0.29 -7.40 9.77 -38.76 -0.38 -7.78 16 14 C 0.16 4.20 5.57 -106.86 -0.60 3.60 16 15 C -0.46 -11.99 9.05 -37.74 -0.34 -12.33 16 16 H 0.08 2.04 7.91 -52.49 -0.41 1.62 16 17 C 0.08 1.91 5.14 -17.35 -0.09 1.82 16 18 N -0.78 -19.76 10.96 55.55 0.61 -19.15 16 19 Si 0.91 18.31 29.60 -169.99 -5.03 13.28 16 20 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 23 C -0.24 -6.10 8.53 -38.66 -0.33 -6.43 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.48 7.87 -51.93 -0.41 0.07 16 27 H 0.06 0.48 7.79 -51.93 -0.40 0.08 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.05 0.52 7.87 -51.93 -0.41 0.11 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.77 7.94 -51.93 -0.41 0.35 16 36 H 0.05 0.79 7.94 -51.93 -0.41 0.37 16 37 H 0.39 6.87 8.48 -40.82 -0.35 6.52 16 38 H 0.10 2.07 6.70 -52.49 -0.35 1.72 16 39 H 0.10 2.48 8.06 -52.49 -0.42 2.06 16 40 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 41 H 0.12 3.16 6.17 -52.49 -0.32 2.84 16 LS Contribution 345.00 15.07 5.20 5.20 Total: -1.00 -27.90 345.00 -8.57 -36.48 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.42 Total: 8.36 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -2.28 Total: -21.04 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: 0.27 Total: -33.54 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.35 Total: -4.87 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.04 Total: -3.86 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.90 -8.57 -36.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168681526.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.371 kcal (2) G-P(sol) polarization free energy of solvation -27.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds