Wall clock time and date at job start Tue Mar 31 2020 05:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53008 * 109.46868 * 2 1 4 4 O 1.42901 * 109.47405 * 120.00073 * 2 1 3 5 5 C 1.42897 * 113.99739 * 149.99647 * 4 2 1 6 6 C 1.52998 * 109.47211 * 179.97438 * 5 4 2 7 7 C 1.52995 * 109.47462 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.47335 * 180.02562 * 7 6 5 9 9 C 1.38804 * 120.00161 * 180.02562 * 8 7 6 10 10 C 1.38632 * 120.21599 * 0.23843 * 9 8 7 11 11 C 1.38225 * 120.21638 * 180.23540 * 10 9 8 12 12 C 1.38788 * 120.66314 * 359.78357 * 11 10 9 13 13 C 1.37735 * 120.43049 * 359.97339 * 12 11 10 14 14 F 1.35102 * 120.12343 * 179.97438 * 13 12 11 15 15 C 1.40992 * 119.76306 * 0.02562 * 13 12 11 16 16 C 1.40998 * 120.32169 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00151 * 218.00214 * 16 15 13 18 18 C 1.39915 * 120.00380 * 37.99627 * 16 15 13 19 19 N 1.30909 * 119.99638 * 23.85247 * 18 16 15 20 20 Si 1.86798 * 120.00199 * 203.58579 * 18 16 15 21 21 H 1.48500 * 109.46963 * 180.27601 * 20 18 16 22 22 H 1.48502 * 109.46783 * 300.27112 * 20 18 16 23 23 H 1.48494 * 109.47422 * 60.26953 * 20 18 16 24 24 H 1.09001 * 109.46450 * 299.99592 * 1 2 3 25 25 H 1.08992 * 109.47544 * 59.99203 * 1 2 3 26 26 H 1.09000 * 109.46943 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46756 * 240.00708 * 2 1 3 28 28 H 1.09001 * 109.46572 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47170 * 300.00618 * 3 2 1 30 30 H 1.09000 * 109.46762 * 60.00307 * 3 2 1 31 31 H 1.09006 * 109.47014 * 60.00322 * 5 4 2 32 32 H 1.09002 * 109.47355 * 300.00640 * 5 4 2 33 33 H 1.09006 * 109.46829 * 60.00258 * 6 5 4 34 34 H 1.09002 * 109.47523 * 300.00586 * 6 5 4 35 35 H 1.09006 * 109.46887 * 60.00295 * 7 6 5 36 36 H 1.09002 * 109.47231 * 300.00766 * 7 6 5 37 37 H 0.97003 * 120.00149 * 0.02562 * 8 7 6 38 38 H 1.08000 * 119.89336 * 359.97438 * 10 9 8 39 39 H 1.08002 * 119.66994 * 179.75715 * 11 10 9 40 40 H 1.08005 * 119.78704 * 180.02562 * 12 11 10 41 41 H 0.96996 * 119.99982 * 5.52098 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0065 -0.6736 1.1668 5 6 3.2661 -1.3245 0.9884 6 6 3.6763 -2.0081 2.2943 7 6 5.0246 -2.7055 2.1033 8 7 5.4170 -3.3606 3.3535 9 6 6.6130 -4.0616 3.4240 10 6 7.4418 -4.1406 2.3156 11 6 8.6304 -4.8427 2.3843 12 6 9.0131 -5.4730 3.5601 13 6 8.2127 -5.4078 4.6791 14 9 8.5910 -6.0241 5.8203 15 6 6.9964 -4.6964 4.6291 16 6 6.1677 -4.6225 5.7674 17 1 5.0941 -4.6645 5.6574 18 6 6.7360 -4.4948 7.0395 19 7 7.9351 -3.9867 7.1726 20 14 5.7809 -5.0425 8.5485 21 1 6.5952 -4.7969 9.7658 22 1 4.5133 -4.2741 8.6377 23 1 5.4748 -6.4916 8.4417 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 4.0201 -0.5873 0.7123 32 1 3.1809 -2.0706 0.1984 33 1 2.9224 -2.7452 2.5709 34 1 3.7615 -1.2617 3.0841 35 1 5.7787 -1.9687 1.8264 36 1 4.9389 -3.4520 1.3136 37 1 4.8412 -3.3044 4.1320 38 1 7.1559 -3.6554 1.3940 39 1 9.2676 -4.9019 1.5143 40 1 9.9451 -6.0175 3.5982 41 1 8.3972 -3.6253 6.4001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168681745.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:09 Heat of formation + Delta-G solvation = -93.011488 kcal Electronic energy + Delta-G solvation = -21524.975244 eV Core-core repulsion = 18125.240359 eV Total energy + Delta-G solvation = -3399.734885 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.07302 -38.70163 -38.02403 -35.36248 -33.68070 -33.22568 -31.24107 -29.27119 -27.77955 -27.46605 -25.05410 -24.47504 -21.96276 -21.49955 -20.78763 -20.11913 -17.82141 -17.04369 -16.45202 -16.07606 -15.52753 -15.11820 -14.63354 -14.53537 -13.95523 -13.92425 -13.90579 -13.81317 -13.28627 -12.96737 -12.74443 -12.63836 -12.48228 -12.12953 -11.85989 -11.54539 -11.49189 -11.42251 -11.24369 -11.03459 -10.87053 -10.69614 -10.57058 -10.34463 -10.22485 -9.71156 -9.40830 -9.02617 -8.76428 -7.35299 -7.06895 -6.48887 -4.26179 2.68107 2.79772 3.23861 3.32062 3.39289 3.45183 4.16337 4.36616 4.62728 4.69863 4.75520 4.91367 4.95527 5.15103 5.18464 5.30777 5.32485 5.36667 5.50721 5.56325 5.58574 5.61342 5.76284 5.90296 5.94262 5.95593 6.03286 6.21694 6.22453 6.33232 6.41150 6.88825 7.09759 7.23587 7.27145 7.42451 7.72433 7.86976 8.00828 8.21978 8.31756 8.71925 8.82446 8.98073 10.26343 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018707 B = 0.003659 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.426343 B = 7650.630124 C = 8834.810571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.080 3.920 3 C -0.176 4.176 4 O -0.383 6.383 5 C 0.068 3.932 6 C -0.129 4.129 7 C 0.139 3.861 8 N -0.742 5.742 9 C 0.148 3.852 10 C -0.188 4.188 11 C -0.170 4.170 12 C -0.168 4.168 13 C 0.015 3.985 14 F -0.147 7.147 15 C 0.026 3.974 16 C -0.539 4.539 17 H 0.073 0.927 18 C 0.042 3.958 19 N -0.795 5.795 20 Si 1.066 2.934 21 H -0.276 1.276 22 H -0.280 1.280 23 H -0.277 1.277 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.399 0.601 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.143 7.126 -11.918 17.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.022 3.978 3 C -0.233 4.233 4 O -0.302 6.302 5 C -0.009 4.009 6 C -0.167 4.167 7 C 0.014 3.986 8 N -0.376 5.376 9 C 0.047 3.953 10 C -0.212 4.212 11 C -0.189 4.189 12 C -0.189 4.189 13 C -0.007 4.007 14 F -0.126 7.126 15 C 0.021 3.979 16 C -0.568 4.568 17 H 0.091 0.909 18 C -0.179 4.179 19 N -0.418 5.418 20 Si 0.890 3.110 21 H -0.200 1.200 22 H -0.206 1.206 23 H -0.203 1.203 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.235 0.765 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.089 7.032 -10.215 15.987 hybrid contribution 0.065 0.153 -1.599 1.608 sum -10.024 7.185 -11.814 17.078 Atomic orbital electron populations 1.21864 0.93720 1.02713 1.02416 1.22067 0.94951 0.92460 0.88305 1.22308 1.01674 0.96858 1.02490 1.87928 1.36824 1.70008 1.35487 1.22403 0.85366 0.95334 0.97793 1.21649 0.97339 1.00366 0.97323 1.20891 0.93946 0.95392 0.88419 1.43950 1.22162 1.59120 1.12416 1.17643 0.88001 0.95151 0.94493 1.20102 0.97159 1.07303 0.96627 1.19941 0.97839 1.04581 0.96587 1.20422 0.99795 1.05204 0.93441 1.17545 0.98703 1.02009 0.82444 1.91358 1.91129 1.80971 1.49137 1.17218 0.93053 0.94751 0.92925 1.19929 0.95233 1.49657 0.91950 0.90896 1.26752 0.96002 0.92919 1.02259 1.70425 1.11687 1.23210 1.36495 0.83618 0.75282 0.77390 0.74694 1.20050 1.20552 1.20262 0.91776 0.91389 0.91987 0.92321 0.92412 0.91790 0.91738 0.93220 0.93192 0.90632 0.90557 0.93361 0.93342 0.76462 0.88612 0.88394 0.88309 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.56 37.16 0.36 -0.82 16 2 C 0.08 0.74 3.34 -26.72 -0.09 0.65 16 3 C -0.18 -1.44 9.53 37.16 0.35 -1.08 16 4 O -0.38 -4.63 9.99 -35.23 -0.35 -4.98 16 5 C 0.07 0.77 5.75 37.16 0.21 0.98 16 6 C -0.13 -1.68 5.70 -26.73 -0.15 -1.84 16 7 C 0.14 2.13 4.90 -4.05 -0.02 2.11 16 8 N -0.74 -14.68 5.63 -58.23 -0.33 -15.01 16 9 C 0.15 3.44 6.68 -83.32 -0.56 2.89 16 10 C -0.19 -4.05 9.29 -39.44 -0.37 -4.42 16 11 C -0.17 -3.67 10.03 -39.38 -0.40 -4.06 16 12 C -0.17 -3.98 9.99 -39.56 -0.40 -4.37 16 13 C 0.01 0.39 6.15 -38.72 -0.24 0.16 16 14 F -0.15 -4.13 14.56 2.25 0.03 -4.10 16 15 C 0.03 0.69 5.00 -106.57 -0.53 0.16 16 16 C -0.54 -14.32 8.05 -37.91 -0.31 -14.62 16 17 H 0.07 1.85 7.22 -52.49 -0.38 1.48 16 18 C 0.04 1.11 4.36 -17.32 -0.08 1.03 16 19 N -0.80 -22.42 12.11 55.55 0.67 -21.74 16 20 Si 1.07 22.97 29.99 -169.99 -5.10 17.88 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.48 7.79 -51.93 -0.40 0.08 16 28 H 0.06 0.49 7.87 -51.93 -0.41 0.08 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.52 7.87 -51.93 -0.41 0.11 16 32 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.73 7.93 -51.93 -0.41 0.32 16 36 H 0.05 0.72 7.95 -51.93 -0.41 0.30 16 37 H 0.40 8.01 6.93 -40.82 -0.28 7.73 16 38 H 0.10 1.79 6.71 -52.49 -0.35 1.44 16 39 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 40 H 0.10 2.13 8.06 -52.48 -0.42 1.71 16 41 H 0.29 8.45 7.07 -40.82 -0.29 8.16 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -29.39 340.46 -8.52 -37.90 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.37 Total: 8.18 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -2.20 Total: -23.25 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.34 Total: -36.75 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.35 Total: -4.98 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.03 Total: -4.10 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.10 Total: 17.88 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.39 -8.52 -37.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168681745.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.109 kcal (2) G-P(sol) polarization free energy of solvation -29.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds