Wall clock time and date at job start Tue Mar 31 2020 05:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53008 * 109.46868 * 2 1 4 4 O 1.42901 * 109.47405 * 120.00073 * 2 1 3 5 5 C 1.42897 * 113.99739 * 149.99647 * 4 2 1 6 6 C 1.52998 * 109.47211 * 179.97438 * 5 4 2 7 7 C 1.52995 * 109.47462 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.47335 * 180.02562 * 7 6 5 9 9 C 1.38804 * 120.00161 * 180.02562 * 8 7 6 10 10 C 1.38632 * 120.21599 * 0.23843 * 9 8 7 11 11 C 1.38225 * 120.21638 * 180.23540 * 10 9 8 12 12 C 1.38788 * 120.66314 * 359.78357 * 11 10 9 13 13 C 1.37735 * 120.43049 * 359.97339 * 12 11 10 14 14 F 1.35102 * 120.12343 * 179.97438 * 13 12 11 15 15 C 1.40992 * 119.76306 * 0.02562 * 13 12 11 16 16 C 1.40998 * 120.32169 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00151 * 218.00214 * 16 15 13 18 18 C 1.39915 * 120.00380 * 37.99627 * 16 15 13 19 19 N 1.30909 * 119.99638 * 23.85247 * 18 16 15 20 20 Si 1.86798 * 120.00199 * 203.58579 * 18 16 15 21 21 H 1.48500 * 109.46963 * 180.27601 * 20 18 16 22 22 H 1.48502 * 109.46783 * 300.27112 * 20 18 16 23 23 H 1.48494 * 109.47422 * 60.26953 * 20 18 16 24 24 H 1.09001 * 109.46450 * 299.99592 * 1 2 3 25 25 H 1.08992 * 109.47544 * 59.99203 * 1 2 3 26 26 H 1.09000 * 109.46943 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46756 * 240.00708 * 2 1 3 28 28 H 1.09001 * 109.46572 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47170 * 300.00618 * 3 2 1 30 30 H 1.09000 * 109.46762 * 60.00307 * 3 2 1 31 31 H 1.09006 * 109.47014 * 60.00322 * 5 4 2 32 32 H 1.09002 * 109.47355 * 300.00640 * 5 4 2 33 33 H 1.09006 * 109.46829 * 60.00258 * 6 5 4 34 34 H 1.09002 * 109.47523 * 300.00586 * 6 5 4 35 35 H 1.09006 * 109.46887 * 60.00295 * 7 6 5 36 36 H 1.09002 * 109.47231 * 300.00766 * 7 6 5 37 37 H 0.97003 * 120.00149 * 0.02562 * 8 7 6 38 38 H 1.08000 * 119.89336 * 359.97438 * 10 9 8 39 39 H 1.08002 * 119.66994 * 179.75715 * 11 10 9 40 40 H 1.08005 * 119.78704 * 180.02562 * 12 11 10 41 41 H 0.96996 * 119.99982 * 5.52098 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0065 -0.6736 1.1668 5 6 3.2661 -1.3245 0.9884 6 6 3.6763 -2.0081 2.2943 7 6 5.0246 -2.7055 2.1033 8 7 5.4170 -3.3606 3.3535 9 6 6.6130 -4.0616 3.4240 10 6 7.4418 -4.1406 2.3156 11 6 8.6304 -4.8427 2.3843 12 6 9.0131 -5.4730 3.5601 13 6 8.2127 -5.4078 4.6791 14 9 8.5910 -6.0241 5.8203 15 6 6.9964 -4.6964 4.6291 16 6 6.1677 -4.6225 5.7674 17 1 5.0941 -4.6645 5.6574 18 6 6.7360 -4.4948 7.0395 19 7 7.9351 -3.9867 7.1726 20 14 5.7809 -5.0425 8.5485 21 1 6.5952 -4.7969 9.7658 22 1 4.5133 -4.2741 8.6377 23 1 5.4748 -6.4916 8.4417 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 4.0201 -0.5873 0.7123 32 1 3.1809 -2.0706 0.1984 33 1 2.9224 -2.7452 2.5709 34 1 3.7615 -1.2617 3.0841 35 1 5.7787 -1.9687 1.8264 36 1 4.9389 -3.4520 1.3136 37 1 4.8412 -3.3044 4.1320 38 1 7.1559 -3.6554 1.3940 39 1 9.2676 -4.9019 1.5143 40 1 9.9451 -6.0175 3.5982 41 1 8.3972 -3.6253 6.4001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168681745.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:08 Heat of formation + Delta-G solvation = -109.324565 kcal Electronic energy + Delta-G solvation = -21525.682632 eV Core-core repulsion = 18125.240359 eV Total energy + Delta-G solvation = -3400.442273 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.14723 -39.91711 -39.37672 -36.77061 -35.59233 -34.20857 -32.44968 -31.08880 -29.36845 -28.11834 -26.84098 -25.84953 -23.34310 -22.47949 -22.23568 -21.73682 -19.73590 -18.20904 -17.93153 -17.27184 -16.96200 -16.43247 -16.07058 -15.99741 -15.65940 -15.60907 -15.54059 -15.19308 -14.59052 -14.30822 -14.05849 -13.68232 -13.53641 -13.33308 -13.14546 -12.99881 -12.75072 -12.65352 -12.43958 -12.30818 -12.30213 -12.05890 -11.98657 -11.88707 -11.57581 -11.27752 -10.74933 -10.62874 -10.51131 -9.29837 -9.06912 -8.22886 -6.25446 0.80986 0.95574 1.48915 1.60924 1.76577 2.38930 2.45842 2.78924 3.02877 3.42897 3.93292 3.95247 4.05213 4.12844 4.13675 4.21228 4.30220 4.33380 4.48538 4.53865 4.56328 4.62365 4.69758 4.74266 4.85736 4.91021 4.94311 5.04544 5.11168 5.15983 5.28822 5.33028 5.42616 5.48909 5.55983 5.86282 5.89113 6.04189 6.32142 6.33497 6.53158 6.94292 7.01222 7.12003 8.22390 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018707 B = 0.003659 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.426343 B = 7650.630124 C = 8834.810571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.071 3.929 3 C -0.174 4.174 4 O -0.407 6.407 5 C 0.072 3.928 6 C -0.120 4.120 7 C 0.138 3.862 8 N -0.743 5.743 9 C 0.151 3.849 10 C -0.194 4.194 11 C -0.145 4.145 12 C -0.189 4.189 13 C -0.015 4.015 14 F -0.166 7.166 15 C -0.012 4.012 16 C -0.565 4.565 17 H 0.073 0.927 18 C 0.002 3.998 19 N -0.829 5.829 20 Si 1.111 2.889 21 H -0.278 1.278 22 H -0.254 1.254 23 H -0.272 1.272 24 H 0.055 0.945 25 H 0.089 0.911 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.395 0.605 38 H 0.133 0.867 39 H 0.140 0.860 40 H 0.115 0.885 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.132 7.786 -14.506 19.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.014 3.986 3 C -0.231 4.231 4 O -0.327 6.327 5 C -0.005 4.005 6 C -0.158 4.158 7 C 0.014 3.986 8 N -0.375 5.375 9 C 0.048 3.952 10 C -0.218 4.218 11 C -0.165 4.165 12 C -0.210 4.210 13 C -0.037 4.037 14 F -0.145 7.145 15 C -0.018 4.018 16 C -0.595 4.595 17 H 0.091 0.909 18 C -0.212 4.212 19 N -0.453 5.453 20 Si 0.929 3.071 21 H -0.203 1.203 22 H -0.178 1.178 23 H -0.198 1.198 24 H 0.074 0.926 25 H 0.108 0.892 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.230 0.770 38 H 0.150 0.850 39 H 0.157 0.843 40 H 0.133 0.867 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.111 7.716 -12.847 18.656 hybrid contribution 0.369 -0.019 -1.067 1.129 sum -10.742 7.697 -13.914 19.189 Atomic orbital electron populations 1.21885 0.92923 1.02668 1.03113 1.22319 0.95675 0.92814 0.87798 1.22297 1.01427 0.96381 1.03019 1.87896 1.37061 1.70471 1.37271 1.22342 0.85589 0.95841 0.96712 1.21518 0.96043 0.99868 0.98331 1.21098 0.95161 0.95713 0.86612 1.44193 1.20906 1.58405 1.13954 1.17918 0.89053 0.94284 0.93947 1.20528 0.96727 1.07149 0.97361 1.20496 0.97714 1.01454 0.96793 1.20703 1.00435 1.06442 0.93401 1.18090 0.99855 1.02935 0.82799 1.91293 1.91362 1.81427 1.50389 1.17571 0.93707 0.96092 0.94426 1.20060 0.95328 1.51402 0.92678 0.90888 1.28050 0.96069 0.91866 1.05171 1.70559 1.13185 1.26297 1.35249 0.83075 0.75065 0.77504 0.71414 1.20297 1.17820 1.19751 0.92588 0.89201 0.92400 0.91051 0.92762 0.89811 0.92685 0.92234 0.91747 0.91193 0.91654 0.92470 0.91917 0.77012 0.84963 0.84255 0.86743 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.56 71.98 0.69 -1.36 16 2 C 0.07 1.15 3.34 30.60 0.10 1.26 16 3 C -0.17 -2.48 9.53 71.98 0.69 -1.80 16 4 O -0.41 -9.15 9.99 -148.98 -1.49 -10.64 16 5 C 0.07 1.45 5.75 71.98 0.41 1.86 16 6 C -0.12 -2.93 5.70 30.59 0.17 -2.76 16 7 C 0.14 3.88 4.90 86.38 0.42 4.30 16 8 N -0.74 -28.61 5.63 -338.13 -1.90 -30.51 16 9 C 0.15 6.89 6.68 38.94 0.26 7.15 16 10 C -0.19 -7.76 9.29 22.36 0.21 -7.56 16 11 C -0.15 -5.81 10.03 22.40 0.22 -5.59 16 12 C -0.19 -8.79 9.99 22.28 0.22 -8.57 16 13 C -0.02 -0.83 6.15 22.83 0.14 -0.69 16 14 F -0.17 -9.70 14.56 44.97 0.65 -9.04 16 15 C -0.01 -0.66 5.00 -21.12 -0.11 -0.77 16 16 C -0.56 -30.93 8.05 23.35 0.19 -30.74 16 17 H 0.07 3.82 7.22 -2.91 -0.02 3.80 16 18 C 0.00 0.13 4.36 85.24 0.37 0.50 16 19 N -0.83 -48.72 12.11 21.83 0.26 -48.45 16 20 Si 1.11 47.27 29.99 68.60 2.06 49.33 16 21 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 24 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 0.97 7.79 -2.39 -0.02 0.95 16 28 H 0.05 0.80 7.87 -2.39 -0.02 0.78 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 1.08 7.87 -2.38 -0.02 1.06 16 32 H 0.06 1.11 8.09 -2.39 -0.02 1.09 16 33 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.06 1.54 7.93 -2.38 -0.02 1.52 16 36 H 0.06 1.63 7.95 -2.39 -0.02 1.61 16 37 H 0.40 15.88 6.93 -92.71 -0.64 15.23 16 38 H 0.13 4.31 6.71 -2.91 -0.02 4.29 16 39 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 40 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 41 H 0.27 16.58 7.07 -92.71 -0.66 15.92 16 Total: -1.00 -65.59 340.46 4.07 -61.53 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: 0.49 Total: 32.56 kcal Atomic # 6 Polarization: -48.76 SS G_CDS: 4.00 Total: -44.76 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -1.64 Total: -78.97 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -1.49 Total: -10.64 kcal Atomic # 9 Polarization: -9.70 SS G_CDS: 0.65 Total: -9.04 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.06 Total: 49.33 kcal Total: -65.59 4.07 -61.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168681745.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.798 kcal (2) G-P(sol) polarization free energy of solvation -65.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds