Wall clock time and date at job start Tue Mar 31 2020 05:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00143 * 2 1 4 4 C 1.52997 * 109.46961 * 125.00323 * 3 2 1 5 5 C 1.53009 * 109.46825 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.46887 * 179.97438 * 5 4 3 7 7 C 1.39297 * 119.99844 * 179.97438 * 6 5 4 8 8 C 1.36227 * 120.30223 * 359.72136 * 7 6 5 9 9 C 1.41183 * 120.64932 * 179.77053 * 8 7 6 10 10 C 1.41191 * 119.50906 * 180.28532 * 9 8 7 11 11 H 1.07994 * 119.99907 * 333.62239 * 10 9 8 12 12 C 1.39900 * 119.99864 * 153.62116 * 10 9 8 13 13 N 1.30846 * 120.00256 * 342.78632 * 12 10 9 14 14 Si 1.86802 * 119.99948 * 162.79015 * 12 10 9 15 15 H 1.48497 * 109.47025 * 89.99994 * 14 12 10 16 16 H 1.48507 * 109.46815 * 210.00047 * 14 12 10 17 17 H 1.48496 * 109.46865 * 329.99801 * 14 12 10 18 18 C 1.39983 * 120.97965 * 0.48677 * 9 8 7 19 19 C 1.39866 * 120.01997 * 359.77555 * 18 9 8 20 20 C 1.40858 * 121.16889 * 179.97438 * 19 18 9 21 21 C 1.36190 * 119.60997 * 180.02562 * 20 19 18 22 22 C 1.39250 * 120.95256 * 0.02863 * 21 20 19 23 23 C 1.36522 * 120.99474 * 359.97040 * 22 21 20 24 24 C 1.39889 * 119.72540 * 0.02562 * 23 22 21 25 25 H 1.08001 * 120.00103 * 359.97438 * 1 2 3 26 26 H 1.08003 * 119.99970 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.99602 * 180.02562 * 2 1 3 28 28 H 1.08992 * 109.46855 * 5.00051 * 3 2 1 29 29 H 1.09002 * 109.46942 * 245.00268 * 3 2 1 30 30 H 1.08992 * 109.47558 * 60.00159 * 4 3 2 31 31 H 1.09002 * 109.47247 * 299.99757 * 4 3 2 32 32 H 1.08995 * 109.46804 * 299.99103 * 5 4 3 33 33 H 1.08992 * 109.47125 * 59.99645 * 5 4 3 34 34 H 0.96999 * 120.00260 * 359.97438 * 6 5 4 35 35 H 1.07996 * 119.67330 * 359.97438 * 8 7 6 36 36 H 0.97003 * 120.00170 * 179.97438 * 13 12 10 37 37 H 1.07998 * 119.98943 * 179.75459 * 18 9 8 38 38 H 1.07998 * 120.19143 * 0.05290 * 20 19 18 39 39 H 1.07997 * 119.52364 * 179.97438 * 21 20 19 40 40 H 1.08005 * 119.50523 * 179.97438 * 22 21 20 41 41 H 1.07994 * 120.13914 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 6 3.7997 2.6583 1.1819 6 7 4.7295 2.6853 2.3137 7 6 5.5407 3.7983 2.5222 8 6 5.4784 4.8628 1.6744 9 6 6.2937 5.9966 1.8816 10 6 6.2051 7.0889 0.9913 11 1 5.8816 6.9309 -0.0268 12 6 6.5366 8.3760 1.4282 13 7 6.5998 8.6361 2.7090 14 14 6.8887 9.7232 0.1830 15 1 5.6265 10.4306 -0.1511 16 1 7.8595 10.6881 0.7590 17 1 7.4601 9.1217 -1.0486 18 6 7.1915 6.0522 2.9541 19 6 7.2875 4.9764 3.8428 20 6 8.1829 5.0064 4.9297 21 6 8.2508 3.9409 5.7752 22 6 7.4477 2.8201 5.5809 23 6 6.5689 2.7572 4.5380 24 6 6.4704 3.8321 3.6481 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8499 -0.9354 -0.0004 28 1 1.3586 2.1315 0.0896 29 1 2.6212 1.4025 -0.9314 30 1 3.7399 0.5065 1.0920 31 1 2.4773 1.2355 2.1130 32 1 4.3574 2.7561 0.2506 33 1 3.0945 3.4845 1.2717 34 1 4.7804 1.9281 2.9178 35 1 4.7963 4.8404 0.8374 36 1 6.8300 9.5285 3.0119 37 1 7.8104 6.9260 3.0953 38 1 8.8116 5.8695 5.0919 39 1 8.9382 3.9652 6.6079 40 1 7.5210 1.9880 6.2655 41 1 5.9523 1.8813 4.4006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170301981.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:32 Heat of formation + Delta-G solvation = 39.159461 kcal Electronic energy + Delta-G solvation = -20607.918527 eV Core-core repulsion = 17644.684229 eV Total energy + Delta-G solvation = -2963.234297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.91775 -36.97288 -35.66493 -34.88162 -32.81750 -31.51578 -29.81427 -29.41808 -27.30674 -25.59318 -24.75703 -22.22351 -21.71655 -20.89326 -20.13456 -19.71159 -17.65913 -16.42854 -15.95487 -15.85288 -15.15523 -14.97539 -14.59075 -14.37291 -13.92256 -13.48819 -13.12176 -12.95556 -12.83516 -12.36811 -12.29773 -11.97642 -11.82687 -11.61414 -11.42479 -11.12548 -11.03439 -10.90502 -10.77310 -10.63849 -10.41498 -10.15876 -9.69295 -9.51722 -9.42100 -9.34970 -8.78344 -7.98091 -7.38254 -6.79163 -5.99727 -4.31561 1.95332 2.08700 2.39222 2.99590 3.06071 3.11349 3.53501 3.89546 4.00959 4.15149 4.66754 4.84765 4.88512 5.09442 5.24310 5.28920 5.57336 5.65668 5.71057 5.73323 5.77739 5.79002 5.87340 5.94420 6.17402 6.18159 6.29311 6.42868 6.43431 6.58573 6.71557 6.77906 6.85237 7.05360 7.12336 7.14990 7.40333 7.48793 7.60836 7.66055 7.94323 8.12452 8.18863 8.28937 8.47428 8.68709 8.88398 8.97766 10.15103 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011324 B = 0.004888 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.022198 B = 5727.091601 C = 8052.399878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.150 4.150 3 C -0.093 4.093 4 C -0.125 4.125 5 C 0.132 3.868 6 N -0.754 5.754 7 C 0.216 3.784 8 C -0.245 4.245 9 C 0.144 3.856 10 C -0.451 4.451 11 H 0.078 0.922 12 C 0.075 3.925 13 N -0.776 5.776 14 Si 0.906 3.094 15 H -0.270 1.270 16 H -0.275 1.275 17 H -0.260 1.260 18 C -0.244 4.244 19 C 0.025 3.975 20 C -0.146 4.146 21 C -0.111 4.111 22 C -0.209 4.209 23 C -0.069 4.069 24 C -0.167 4.167 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.389 0.611 35 H 0.098 0.902 36 H 0.281 0.719 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.689 -10.259 -2.451 11.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.168 4.168 3 C -0.130 4.130 4 C -0.162 4.162 5 C 0.007 3.993 6 N -0.386 5.386 7 C 0.115 3.885 8 C -0.271 4.271 9 C 0.140 3.860 10 C -0.479 4.479 11 H 0.096 0.904 12 C -0.144 4.144 13 N -0.400 5.400 14 Si 0.730 3.270 15 H -0.195 1.195 16 H -0.200 1.200 17 H -0.184 1.184 18 C -0.265 4.265 19 C 0.024 3.976 20 C -0.165 4.165 21 C -0.130 4.130 22 C -0.228 4.228 23 C -0.087 4.087 24 C -0.170 4.170 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.125 0.875 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.222 0.778 35 H 0.116 0.884 36 H 0.092 0.908 37 H 0.135 0.865 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.768 -10.008 -2.450 11.808 hybrid contribution 0.063 0.369 -0.188 0.418 sum -5.706 -9.640 -2.637 11.508 Atomic orbital electron populations 1.23856 0.96010 1.01775 1.01953 1.22981 0.96024 0.98562 0.99206 1.20690 0.98165 0.95429 0.98759 1.21701 0.98020 0.97785 0.98738 1.21171 0.91613 0.96584 0.89962 1.44324 1.43899 1.18709 1.31714 1.18334 0.89783 0.86839 0.93520 1.20370 1.07157 0.96323 1.03222 1.17204 0.87221 0.90235 0.91302 1.19621 1.38560 0.91425 0.98332 0.90422 1.25921 0.92693 1.00174 0.95617 1.69880 1.32543 1.22488 1.15120 0.86349 0.79124 0.80021 0.81494 1.19489 1.20002 1.18384 1.20966 1.05945 0.98936 1.00619 1.17764 0.93037 0.92882 0.93899 1.20867 1.00913 0.98293 0.96392 1.20455 0.99283 0.94381 0.98839 1.20175 1.02422 0.99133 1.01050 1.20409 0.97272 0.96377 0.94664 1.18248 1.03472 0.96810 0.98432 0.88549 0.88704 0.87498 0.91134 0.90600 0.91479 0.91506 0.92681 0.92670 0.77756 0.88397 0.90769 0.86487 0.87452 0.88373 0.88527 0.88683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.68 14.32 29.02 0.42 -1.26 16 2 C -0.15 -1.34 9.52 -36.03 -0.34 -1.68 16 3 C -0.09 -0.89 5.66 -27.89 -0.16 -1.05 16 4 C -0.12 -1.35 5.31 -26.73 -0.14 -1.49 16 5 C 0.13 1.88 4.90 -4.04 -0.02 1.86 16 6 N -0.75 -12.94 5.68 -57.36 -0.33 -13.27 16 7 C 0.22 4.72 6.78 -82.06 -0.56 4.17 16 8 C -0.25 -5.85 8.94 -39.19 -0.35 -6.20 16 9 C 0.14 3.80 5.55 -107.00 -0.59 3.21 16 10 C -0.45 -11.72 8.99 -37.84 -0.34 -12.06 16 11 H 0.08 1.92 7.90 -52.49 -0.41 1.50 16 12 C 0.08 1.87 5.10 -17.35 -0.09 1.78 16 13 N -0.78 -19.99 11.00 55.54 0.61 -19.38 16 14 Si 0.91 18.32 29.59 -169.99 -5.03 13.29 16 15 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 16 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 17 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 18 C -0.24 -6.48 8.38 -38.32 -0.32 -6.80 16 19 C 0.03 0.62 5.74 -106.87 -0.61 0.00 16 20 C -0.15 -3.24 9.78 -39.33 -0.38 -3.62 16 21 C -0.11 -2.19 9.95 -39.94 -0.40 -2.59 16 22 C -0.21 -3.99 9.96 -39.82 -0.40 -4.39 16 23 C -0.07 -1.37 9.54 -39.58 -0.38 -1.75 16 24 C -0.17 -3.83 5.90 -104.72 -0.62 -4.44 16 25 H 0.10 0.79 7.84 -52.49 -0.41 0.37 16 26 H 0.09 0.68 8.06 -52.48 -0.42 0.26 16 27 H 0.11 0.87 8.06 -52.48 -0.42 0.44 16 28 H 0.07 0.68 7.79 -51.93 -0.40 0.28 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.81 7.92 -51.93 -0.41 0.40 16 33 H 0.06 0.84 7.95 -51.93 -0.41 0.42 16 34 H 0.39 5.94 6.71 -40.82 -0.27 5.66 16 35 H 0.10 2.17 6.64 -52.49 -0.35 1.83 16 36 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 37 H 0.12 3.23 6.19 -52.49 -0.32 2.90 16 38 H 0.11 2.24 8.06 -52.49 -0.42 1.82 16 39 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 40 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 41 H 0.10 1.60 6.53 -52.49 -0.34 1.26 16 LS Contribution 340.40 15.07 5.13 5.13 Total: -1.00 -28.00 340.40 -10.76 -38.76 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -5.86 Total: 11.78 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: -5.28 Total: -36.31 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.29 Total: -32.65 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.00 -10.76 -38.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170301981.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.923 kcal (2) G-P(sol) polarization free energy of solvation -28.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds